RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 SALL2Q9Y467 1007 aaPredicted RBP9.68□□□□□ -0.86
USP3-210ENST00000559192 ZBTB47Q9UFB7 747 aaPredicted RBP9.67□□□□□ -0.86
USP3-210ENST00000559192 MYT1LQ9UL68 1186 aa9.66□□□□□ -0.86
USP3-210ENST00000559192 CCNB3Q8WWL7 1395 aa9.66□□□□□ -0.86
USP3-210ENST00000559192 DHX57Q6P158 1386 aaKnown RBP9.63□□□□□ -0.87
USP3-210ENST00000559192 TOP2AP11388 1531 aaKnown RBP9.63□□□□□ -0.87
USP3-210ENST00000559192 B4GALNT3Q6L9W6 998 aa9.62□□□□□ -0.87
USP3-210ENST00000559192 RRP7BPQ9NSQ0 103 aa9.62□□□□□ -0.87
USP3-210ENST00000559192 SLC4A1APQ9BWU0 796 aaKnown RBP9.62□□□□□ -0.87
USP3-210ENST00000559192 RAB3GAP2Q9H2M9 1393 aa9.61□□□□□ -0.87
USP3-210ENST00000559192 BAZ1BQ9UIG0 1483 aaKnown RBP9.6□□□□□ -0.87
USP3-210ENST00000559192 EIF4G2P78344 907 aaKnown RBP eCLIP9.6□□□□□ -0.87
USP3-210ENST00000559192 ZNF777Q9ULD5 760 aaPredicted RBP9.6□□□□□ -0.87
USP3-210ENST00000559192 PPP4R2Q9NY27 417 aa9.6□□□□□ -0.87
USP3-210ENST00000559192 MTUS2Q5JR59 1369 aa9.59□□□□□ -0.87
USP3-210ENST00000559192 RAPGEF2Q9Y4G8 1499 aa9.59□□□□□ -0.87
USP3-210ENST00000559192 DEKP35659 375 aaKnown RBP9.59□□□□□ -0.87
USP3-210ENST00000559192 RTN4Q9NQC3 1192 aaKnown RBP9.59□□□□□ -0.87
USP3-210ENST00000559192 NOP58Q9Y2X3 529 aaKnown RBP9.59□□□□□ -0.87
USP3-210ENST00000559192 TMC1Q8TDI8 760 aa9.58□□□□□ -0.88
USP3-210ENST00000559192 SETD5Q9C0A6 1442 aa9.58□□□□□ -0.88
USP3-210ENST00000559192 CCER2I3L3R5 266 aa9.58□□□□□ -0.88
USP3-210ENST00000559192 KIF27Q86VH2 1401 aa9.57□□□□□ -0.88
USP3-210ENST00000559192 LAS1LQ9Y4W2 734 aaKnown RBP9.55□□□□□ -0.88
USP3-210ENST00000559192 CANXP27824 592 aaKnown RBP9.55□□□□□ -0.88
USP3-210ENST00000559192 ANP32BQ92688 251 aaKnown RBP9.54□□□□□ -0.88
USP3-210ENST00000559192 ARXQ96QS3 562 aa9.52□□□□□ -0.89
USP3-210ENST00000559192 KDM2AQ9Y2K7 1162 aa9.52□□□□□ -0.89
USP3-210ENST00000559192 HSPA5P11021 654 aaKnown RBP9.51□□□□□ -0.89
USP3-210ENST00000559192 SMARCA2P51531 1590 aa9.5□□□□□ -0.89
USP3-210ENST00000559192 SMARCA4P51532 1647 aa9.5□□□□□ -0.89
USP3-210ENST00000559192 FBLN2P98095 1184 aa9.49□□□□□ -0.89
USP3-210ENST00000559192 NEFMP07197 916 aa9.49□□□□□ -0.89
USP3-210ENST00000559192 PPP1R15AO75807 674 aaPredicted RBP9.48□□□□□ -0.89
USP3-210ENST00000559192 KIF21BO75037 1637 aa9.47□□□□□ -0.89
USP3-210ENST00000559192 ARHGAP35Q9NRY4 1499 aa9.47□□□□□ -0.89
USP3-210ENST00000559192 FOXD1Q16676 465 aa9.46□□□□□ -0.9
USP3-210ENST00000559192 TIMELESSQ9UNS1 1208 aa9.46□□□□□ -0.9
USP3-210ENST00000559192 CUX2O14529 1486 aa9.46□□□□□ -0.9
USP3-210ENST00000559192 TNNT2P45379 298 aaPredicted RBP9.45□□□□□ -0.9
USP3-210ENST00000559192 FHAD1B1AJZ9 1412 aa9.43□□□□□ -0.9
USP3-210ENST00000559192 CARMIL1Q5VZK9 1371 aa9.43□□□□□ -0.9
USP3-210ENST00000559192 DDRGK1Q96HY6 314 aa9.43□□□□□ -0.9
USP3-210ENST00000559192 WDR43Q15061 677 aaKnown RBP eCLIP9.4□□□□□ -0.9
USP3-210ENST00000559192 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.4□□□□□ -0.91e-8■■■□□ 15.2
USP3-210ENST00000559192 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.4□□□□□ -0.9
USP3-210ENST00000559192 FANCIQ9NVI1 1328 aa9.39□□□□□ -0.91
USP3-210ENST00000559192 PPM1GO15355 546 aaPredicted RBP9.39□□□□□ -0.91
USP3-210ENST00000559192 CDK11BP21127 795 aaKnown RBP9.39□□□□□ -0.91
USP3-210ENST00000559192 CARD11Q9BXL7 1154 aa9.39□□□□□ -0.91
USP3-210ENST00000559192 SYNJ1O43426 1573 aa9.38□□□□□ -0.91
USP3-210ENST00000559192 ERICH6BQ5W0A0 696 aa9.38□□□□□ -0.91
USP3-210ENST00000559192 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.37□□□□□ -0.91
USP3-210ENST00000559192 IPO9Q96P70 1041 aaKnown RBP9.37□□□□□ -0.91
USP3-210ENST00000559192 FHOD3Q2V2M9 1422 aa9.37□□□□□ -0.91
USP3-210ENST00000559192 UPF2Q9HAU5 1272 aaKnown RBP9.37□□□□□ -0.91
USP3-210ENST00000559192 RGS3P49796 1198 aa9.36□□□□□ -0.91
USP3-210ENST00000559192 CC2D1BQ5T0F9 858 aaKnown RBP9.36□□□□□ -0.91
USP3-210ENST00000559192 RGL3Q3MIN7 710 aa9.35□□□□□ -0.91
USP3-210ENST00000559192 ARAP1Q96P48 1450 aa9.35□□□□□ -0.91
USP3-210ENST00000559192 EIF4G1Q04637 1599 aaKnown RBP9.34□□□□□ -0.91
USP3-210ENST00000559192 MPHOSPH9Q99550 1183 aa9.34□□□□□ -0.91
USP3-210ENST00000559192 NUDCQ9Y266 331 aa9.34□□□□□ -0.91
USP3-210ENST00000559192 L3MBTL2Q969R5 705 aa9.33□□□□□ -0.92
USP3-210ENST00000559192 RRBP1Q9P2E9 1410 aaKnown RBP9.33□□□□□ -0.92
USP3-210ENST00000559192 MSH5O43196 834 aa9.33□□□□□ -0.92
USP3-210ENST00000559192 PHLDB1Q86UU1 1377 aa9.33□□□□□ -0.92
USP3-210ENST00000559192 WDR97A6NE52 1622 aa9.32□□□□□ -0.92
USP3-210ENST00000559192 HSP90AA1P07900 732 aaKnown RBP9.32□□□□□ -0.92
USP3-210ENST00000559192 CCDC18Q5T9S5 1454 aa9.32□□□□□ -0.92
USP3-210ENST00000559192 ATAD2BQ9ULI0 1458 aa9.31□□□□□ -0.92
USP3-210ENST00000559192 AMER1Q5JTC6 1135 aaPredicted RBP9.31□□□□□ -0.92
USP3-210ENST00000559192 FMN1Q68DA7 1419 aa9.31□□□□□ -0.92
USP3-210ENST00000559192 NAP1L5Q96NT1 182 aaPredicted RBP9.31□□□□□ -0.92
USP3-210ENST00000559192 TSPY4P0CV99 314 aa9.3□□□□□ -0.92
USP3-210ENST00000559192 TSPY10P0CW01 314 aa9.3□□□□□ -0.92
USP3-210ENST00000559192 PRKRIP1Q9H875 184 aaPredicted RBP9.3□□□□□ -0.92
USP3-210ENST00000559192 CFDP1Q9UEE9 299 aaPredicted RBP9.3□□□□□ -0.92
USP3-210ENST00000559192 RCAN3Q9UKA8 241 aa9.3□□□□□ -0.92
USP3-210ENST00000559192 BECN1Q14457 450 aa9.29□□□□□ -0.92
USP3-210ENST00000559192 ZBED9Q6R2W3 1325 aa9.29□□□□□ -0.92
USP3-210ENST00000559192 TRIM44Q96DX7 344 aaPredicted RBP9.29□□□□□ -0.92
USP3-210ENST00000559192 DCAF11Q8TEB1 546 aa9.28□□□□□ -0.92
USP3-210ENST00000559192 LRRC9Q6ZRR7 1453 aa9.27□□□□□ -0.92
USP3-210ENST00000559192 TCERG1O14776 1098 aaKnown RBP9.27□□□□□ -0.92
USP3-210ENST00000559192 CHGAP10645 457 aaKnown RBP9.26□□□□□ -0.93
USP3-210ENST00000559192 WASHC2AQ641Q2 1341 aa9.26□□□□□ -0.93
USP3-210ENST00000559192 SLC4A3P48751 1232 aa9.26□□□□□ -0.93
USP3-210ENST00000559192 EXOC6Q8TAG9 804 aa9.26□□□□□ -0.93
USP3-210ENST00000559192 PAK3O75914 559 aaPredicted RBP9.26□□□□□ -0.93
USP3-210ENST00000559192 SPRYD3Q8NCJ5 442 aa9.25□□□□□ -0.93
USP3-210ENST00000559192 KNSTRNQ9Y448 316 aa9.25□□□□□ -0.93
USP3-210ENST00000559192 PKD2Q13563 968 aa9.25□□□□□ -0.93
USP3-210ENST00000559192 NEUROD2Q15784 382 aa9.25□□□□□ -0.93
USP3-210ENST00000559192 PLIN1O60240 522 aa9.24□□□□□ -0.93
USP3-210ENST00000559192 FRAT1Q92837 279 aaPredicted RBP9.24□□□□□ -0.93
USP3-210ENST00000559192 ERICH3Q5RHP9 1530 aa9.24□□□□□ -0.93
USP3-210ENST00000559192 CNTLNQ9NXG0 1405 aa9.24□□□□□ -0.93
USP3-210ENST00000559192 PDE4AP27815 886 aa9.24□□□□□ -0.93
USP3-210ENST00000559192 CCDC184Q52MB2 194 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms