RNA–Protein interactions for RNA: ENST00000559061.5

SNX1-204, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 550 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-204ENST00000559061 RAPGEF2Q9Y4G8 1499 aa19.32■□□□□ 0.68
SNX1-204ENST00000559061 ERCC6L2Q5T890 1561 aa19.32■□□□□ 0.68
SNX1-204ENST00000559061 EEA1Q15075 1411 aa19.29■□□□□ 0.68
SNX1-204ENST00000559061 KIAA0586Q9BVV6 1533 aa19.25■□□□□ 0.67
SNX1-204ENST00000559061 ARAP1Q96P48 1450 aa19.25■□□□□ 0.67
SNX1-204ENST00000559061 CSRNP3Q8WYN3 585 aa19.23■□□□□ 0.67
SNX1-204ENST00000559061 CTTNBP2Q8WZ74 1663 aa19.22■□□□□ 0.67
SNX1-204ENST00000559061 KIF21BO75037 1637 aa19.21■□□□□ 0.67
SNX1-204ENST00000559061 FAM9AQ8IZU1 332 aaPredicted RBP19.2■□□□□ 0.66
SNX1-204ENST00000559061 IQGAP2Q13576 1575 aa19.19■□□□□ 0.66
SNX1-204ENST00000559061 PRG4Q92954 1404 aaPredicted RBP19.15■□□□□ 0.66
SNX1-204ENST00000559061 JPH4Q96JJ6 628 aa19.14■□□□□ 0.65
SNX1-204ENST00000559061 UGGT2Q9NYU1 1516 aa19.12■□□□□ 0.65
SNX1-204ENST00000559061 DISP1Q96F81 1524 aa19.1■□□□□ 0.65
SNX1-204ENST00000559061 KIAA0556O60303 1618 aa19.05■□□□□ 0.64
SNX1-204ENST00000559061 CYB5RLQ6IPT4 315 aa19.03■□□□□ 0.64
SNX1-204ENST00000559061 GOLGA3Q08378 1498 aa19.03■□□□□ 0.64
SNX1-204ENST00000559061 SAMD9Q5K651 1589 aa19■□□□□ 0.63
SNX1-204ENST00000559061 ADCY10Q96PN6 1610 aa18.96■□□□□ 0.63
SNX1-204ENST00000559061 CARMIL2Q6F5E8 1435 aa18.94■□□□□ 0.62
SNX1-204ENST00000559061 EHMT2Q96KQ7 1210 aa18.94■□□□□ 0.62
SNX1-204ENST00000559061 TNIKQ9UKE5 1360 aa18.93■□□□□ 0.62
SNX1-204ENST00000559061 PTPRGP23470 1445 aa18.89■□□□□ 0.61
SNX1-204ENST00000559061 ABCA8O94911 1581 aa18.85■□□□□ 0.61
SNX1-204ENST00000559061 EFCAB5A4FU69 1503 aa18.85■□□□□ 0.61
SNX1-204ENST00000559061 ARHGAP35Q9NRY4 1499 aa18.84■□□□□ 0.61
SNX1-204ENST00000559061 UBTFP17480 764 aaKnown RBP18.83■□□□□ 0.6
SNX1-204ENST00000559061 ABCC2Q92887 1545 aa18.83■□□□□ 0.6
SNX1-204ENST00000559061 UHRF1BP1LA0JNW5 1464 aa18.83■□□□□ 0.6
SNX1-204ENST00000559061 PLB1Q6P1J6 1458 aa18.83■□□□□ 0.6
SNX1-204ENST00000559061 FHOD3Q2V2M9 1422 aa18.83■□□□□ 0.6
SNX1-204ENST00000559061 UACAQ9BZF9 1416 aa18.81■□□□□ 0.6
SNX1-204ENST00000559061 TTBK1Q5TCY1 1321 aaPredicted RBP18.8■□□□□ 0.6
SNX1-204ENST00000559061 P3H3Q8IVL6 736 aa18.8■□□□□ 0.6
SNX1-204ENST00000559061 RANGAP1P46060 587 aaPredicted RBP18.79■□□□□ 0.6
SNX1-204ENST00000559061 MAPKBP1O60336 1514 aa18.75■□□□□ 0.59
SNX1-204ENST00000559061 KDM5BQ9UGL1 1544 aa18.75■□□□□ 0.59
SNX1-204ENST00000559061 ZCCHC11Q5TAX3 1644 aaKnown RBP18.75■□□□□ 0.59
SNX1-204ENST00000559061 LOC105371045A0A1W2PR82 267 aa18.74■□□□□ 0.59
SNX1-204ENST00000559061 RAPGEF6Q8TEU7 1601 aa18.74■□□□□ 0.59
SNX1-204ENST00000559061 KIF13AQ9H1H9 1805 aa18.71■□□□□ 0.59
SNX1-204ENST00000559061 NUP153P49790 1475 aaKnown RBP18.69■□□□□ 0.58
SNX1-204ENST00000559061 CLIP1P30622 1438 aa18.67■□□□□ 0.58
SNX1-204ENST00000559061 LRRIQ1Q96JM4 1722 aa18.67■□□□□ 0.58
SNX1-204ENST00000559061 CEP162Q5TB80 1403 aa18.66■□□□□ 0.58
SNX1-204ENST00000559061 DIP2BQ9P265 1576 aa18.66■□□□□ 0.58
SNX1-204ENST00000559061 ATP10BO94823 1461 aa18.65■□□□□ 0.58
SNX1-204ENST00000559061 PCF11O94913 1555 aaKnown RBP18.64■□□□□ 0.57
SNX1-204ENST00000559061 ASXL2Q76L83 1435 aa18.63■□□□□ 0.57
SNX1-204ENST00000559061 ABCC10Q5T3U5 1492 aa18.62■□□□□ 0.57
SNX1-204ENST00000559061 FMN1Q68DA7 1419 aa18.59■□□□□ 0.57
SNX1-204ENST00000559061 CDK13Q14004 1512 aaKnown RBP18.58■□□□□ 0.56
SNX1-204ENST00000559061 HECW1Q76N89 1606 aa18.57■□□□□ 0.56
SNX1-204ENST00000559061 ARID3CA6NKF2 412 aa18.57■□□□□ 0.56
SNX1-204ENST00000559061 WDR7Q9Y4E6 1490 aa18.57■□□□□ 0.56
SNX1-204ENST00000559061 NPM1P06748 294 aaKnown RBP eCLIP18.56■□□□□ 0.56
SNX1-204ENST00000559061 EPRSP07814 1512 aaKnown RBP18.55■□□□□ 0.56
SNX1-204ENST00000559061 GLI2P10070 1586 aa18.55■□□□□ 0.56
SNX1-204ENST00000559061 CASKIN1Q8WXD9 1431 aa18.54■□□□□ 0.56
SNX1-204ENST00000559061 PPRC1Q5VV67 1664 aaKnown RBP18.54■□□□□ 0.56
SNX1-204ENST00000559061 TRHP20396 242 aaPredicted RBP18.52■□□□□ 0.56
SNX1-204ENST00000559061 MAP3K4Q9Y6R4 1608 aa18.51■□□□□ 0.55
SNX1-204ENST00000559061 FYCO1Q9BQS8 1478 aa18.51■□□□□ 0.55
SNX1-204ENST00000559061 MAGI3Q5TCQ9 1506 aa18.48■□□□□ 0.55
SNX1-204ENST00000559061 FAM69CQ0P6D2 419 aa18.47■□□□□ 0.55
SNX1-204ENST00000559061 TSPOAP1O95153 1857 aa18.46■□□□□ 0.55
SNX1-204ENST00000559061 ABCA9Q8IUA7 1624 aa18.44■□□□□ 0.54
SNX1-204ENST00000559061 CFAP43Q8NDM7 1665 aa18.43■□□□□ 0.54
SNX1-204ENST00000559061 KIF14Q15058 1648 aa18.41■□□□□ 0.54
SNX1-204ENST00000559061 VPS8Q8N3P4 1428 aa18.41■□□□□ 0.54
SNX1-204ENST00000559061 CCDC18Q5T9S5 1454 aa18.41■□□□□ 0.54
SNX1-204ENST00000559061 TTC37Q6PGP7 1564 aa18.41■□□□□ 0.54
SNX1-204ENST00000559061 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.39■□□□□ 0.54
SNX1-204ENST00000559061 KCNH8Q96L42 1107 aa18.37■□□□□ 0.53
SNX1-204ENST00000559061 TROQ12816 1431 aaPredicted RBP18.36■□□□□ 0.53
SNX1-204ENST00000559061 ATP1B4Q9UN42 357 aaPredicted RBP18.36■□□□□ 0.53
SNX1-204ENST00000559061 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.35■□□□□ 0.53
SNX1-204ENST00000559061 HNRNPUL2Q1KMD3 747 aaKnown RBP18.35■□□□□ 0.53
SNX1-204ENST00000559061 TIAM1Q13009 1591 aa18.33■□□□□ 0.52
SNX1-204ENST00000559061 CD109Q6YHK3 1445 aa18.32■□□□□ 0.52
SNX1-204ENST00000559061 PLEKHD1A6NEE1 506 aa18.32■□□□□ 0.52
SNX1-204ENST00000559061 COL17A1Q9UMD9 1497 aaPredicted RBP18.3■□□□□ 0.52
SNX1-204ENST00000559061 MYO5CQ9NQX4 1742 aa18.26■□□□□ 0.51
SNX1-204ENST00000559061 CDC42BPAQ5VT25 1732 aa18.26■□□□□ 0.51
SNX1-204ENST00000559061 TEX14Q8IWB6 1497 aa18.26■□□□□ 0.51
SNX1-204ENST00000559061 MAP3K1Q13233 1512 aa18.25■□□□□ 0.51
SNX1-204ENST00000559061 EHBP1L1Q8N3D4 1523 aa18.25■□□□□ 0.51
SNX1-204ENST00000559061 KDM6BO15054 1643 aa18.25■□□□□ 0.51
SNX1-204ENST00000559061 CDC42BPBQ9Y5S2 1711 aa18.25■□□□□ 0.51
SNX1-204ENST00000559061 PREX2Q70Z35 1606 aa18.23■□□□□ 0.51
SNX1-204ENST00000559061 CDK11AQ9UQ88 783 aaPredicted RBP18.22■□□□□ 0.51
SNX1-204ENST00000559061 ARAP3Q8WWN8 1544 aa18.22■□□□□ 0.51
SNX1-204ENST00000559061 LRRC9Q6ZRR7 1453 aa18.21■□□□□ 0.51
SNX1-204ENST00000559061 PLCH2O75038 1416 aa18.21■□□□□ 0.51
SNX1-204ENST00000559061 FRMPD1Q5SYB0 1578 aa18.21■□□□□ 0.51
SNX1-204ENST00000559061 NEO1Q92859 1461 aa18.2■□□□□ 0.5
SNX1-204ENST00000559061 KANK4Q5T7N3 995 aaPredicted RBP18.18■□□□□ 0.5
SNX1-204ENST00000559061 FANCAO15360 1455 aa18.18■□□□□ 0.5
SNX1-204ENST00000559061 MTUS2Q5JR59 1369 aa18.17■□□□□ 0.5
SNX1-204ENST00000559061 GPATCH8Q9UKJ3 1502 aaKnown RBP18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms