RNA–Protein interactions for RNA: ENST00000558890.5

LRRC28-211, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 978 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-211ENST00000558890 ARHGEF11O15085 1522 aa12.58□□□□□ -0.4
LRRC28-211ENST00000558890 PRXQ9BXM0 1461 aa12.58□□□□□ -0.4
LRRC28-211ENST00000558890 CSRNP3Q8WYN3 585 aa12.56□□□□□ -0.4
LRRC28-211ENST00000558890 JPH4Q96JJ6 628 aa12.55□□□□□ -0.4
LRRC28-211ENST00000558890 RIMBP3CA6NJZ7 1639 aa12.55□□□□□ -0.4
LRRC28-211ENST00000558890 RIMBP3BA6NNM3 1639 aa12.55□□□□□ -0.4
LRRC28-211ENST00000558890 RIMBP3Q9UFD9 1639 aa12.55□□□□□ -0.4
LRRC28-211ENST00000558890 KIAA0586Q9BVV6 1533 aa12.53□□□□□ -0.4
LRRC28-211ENST00000558890 RAPGEF2Q9Y4G8 1499 aa12.53□□□□□ -0.4
LRRC28-211ENST00000558890 ARAP1Q96P48 1450 aa12.52□□□□□ -0.41
LRRC28-211ENST00000558890 SHROOM2Q13796 1616 aa12.51□□□□□ -0.41
LRRC28-211ENST00000558890 CYB5RLQ6IPT4 315 aa12.5□□□□□ -0.41
LRRC28-211ENST00000558890 ERCC6L2Q5T890 1561 aa12.5□□□□□ -0.41
LRRC28-211ENST00000558890 CTTNBP2Q8WZ74 1663 aa12.48□□□□□ -0.41
LRRC28-211ENST00000558890 GOLGA3Q08378 1498 aa12.47□□□□□ -0.41
LRRC28-211ENST00000558890 PRG4Q92954 1404 aaPredicted RBP12.47□□□□□ -0.41
LRRC28-211ENST00000558890 FAM9AQ8IZU1 332 aaPredicted RBP12.45□□□□□ -0.42
LRRC28-211ENST00000558890 DISP1Q96F81 1524 aa12.4□□□□□ -0.42
LRRC28-211ENST00000558890 IQGAP2Q13576 1575 aa12.39□□□□□ -0.43
LRRC28-211ENST00000558890 UGGT2Q9NYU1 1516 aa12.39□□□□□ -0.43
LRRC28-211ENST00000558890 ADRA2BP18089 450 aa12.39□□□□□ -0.43
LRRC28-211ENST00000558890 PPP6R1Q9UPN7 881 aa12.39□□□□□ -0.43
LRRC28-211ENST00000558890 TNIKQ9UKE5 1360 aa12.35□□□□□ -0.43
LRRC28-211ENST00000558890 EFCAB5A4FU69 1503 aa12.35□□□□□ -0.43
LRRC28-211ENST00000558890 PTPRGP23470 1445 aa12.33□□□□□ -0.44
LRRC28-211ENST00000558890 CARMIL2Q6F5E8 1435 aa12.32□□□□□ -0.44
LRRC28-211ENST00000558890 SAMD9Q5K651 1589 aa12.31□□□□□ -0.44
LRRC28-211ENST00000558890 KIAA0556O60303 1618 aa12.28□□□□□ -0.44
LRRC28-211ENST00000558890 UHRF1BP1LA0JNW5 1464 aa12.26□□□□□ -0.45
LRRC28-211ENST00000558890 UBTFP17480 764 aaKnown RBP12.25□□□□□ -0.45
LRRC28-211ENST00000558890 EHMT2Q96KQ7 1210 aa12.25□□□□□ -0.45
LRRC28-211ENST00000558890 UACAQ9BZF9 1416 aa12.25□□□□□ -0.45
LRRC28-211ENST00000558890 ADCY10Q96PN6 1610 aa12.25□□□□□ -0.45
LRRC28-211ENST00000558890 P3H3Q8IVL6 736 aa12.24□□□□□ -0.45
LRRC28-211ENST00000558890 TTBK1Q5TCY1 1321 aaPredicted RBP12.22□□□□□ -0.45
LRRC28-211ENST00000558890 PLB1Q6P1J6 1458 aa12.21□□□□□ -0.46
LRRC28-211ENST00000558890 CEP162Q5TB80 1403 aa12.2□□□□□ -0.46
LRRC28-211ENST00000558890 ABCC2Q92887 1545 aa12.2□□□□□ -0.46
LRRC28-211ENST00000558890 ABCA8O94911 1581 aa12.19□□□□□ -0.46
LRRC28-211ENST00000558890 LOC105371045A0A1W2PR82 267 aa12.19□□□□□ -0.46
LRRC28-211ENST00000558890 KDM5BQ9UGL1 1544 aa12.19□□□□□ -0.46
LRRC28-211ENST00000558890 ARHGAP35Q9NRY4 1499 aa12.19□□□□□ -0.46
LRRC28-211ENST00000558890 CLIP1P30622 1438 aa12.19□□□□□ -0.46
LRRC28-211ENST00000558890 RANGAP1P46060 587 aaPredicted RBP12.18□□□□□ -0.46
LRRC28-211ENST00000558890 FHOD3Q2V2M9 1422 aa12.18□□□□□ -0.46
LRRC28-211ENST00000558890 FMN1Q68DA7 1419 aa12.17□□□□□ -0.46
LRRC28-211ENST00000558890 MAPKBP1O60336 1514 aa12.16□□□□□ -0.46
LRRC28-211ENST00000558890 NPM1P06748 294 aaKnown RBP eCLIP12.16□□□□□ -0.46
LRRC28-211ENST00000558890 TRHP20396 242 aaPredicted RBP12.14□□□□□ -0.47
LRRC28-211ENST00000558890 ATP10BO94823 1461 aa12.14□□□□□ -0.47
LRRC28-211ENST00000558890 ABCC10Q5T3U5 1492 aa12.14□□□□□ -0.47
LRRC28-211ENST00000558890 ASXL2Q76L83 1435 aa12.13□□□□□ -0.47
LRRC28-211ENST00000558890 NUP153P49790 1475 aaKnown RBP12.11□□□□□ -0.47
LRRC28-211ENST00000558890 FAM69CQ0P6D2 419 aa12.11□□□□□ -0.47
LRRC28-211ENST00000558890 PIAS4Q8N2W9 510 aaPredicted RBP12.11□□□□□ -0.47
LRRC28-211ENST00000558890 RAPGEF6Q8TEU7 1601 aa12.11□□□□□ -0.47
LRRC28-211ENST00000558890 FYCO1Q9BQS8 1478 aa12.1□□□□□ -0.47
LRRC28-211ENST00000558890 HECW1Q76N89 1606 aa12.1□□□□□ -0.47
LRRC28-211ENST00000558890 VPS8Q8N3P4 1428 aa12.09□□□□□ -0.47
LRRC28-211ENST00000558890 CASKIN1Q8WXD9 1431 aa12.08□□□□□ -0.48
LRRC28-211ENST00000558890 ZCCHC11Q5TAX3 1644 aaKnown RBP12.08□□□□□ -0.48
LRRC28-211ENST00000558890 MAP3K1Q13233 1512 aa12.07□□□□□ -0.48
LRRC28-211ENST00000558890 EPRSP07814 1512 aaKnown RBP12.06□□□□□ -0.48
LRRC28-211ENST00000558890 DIP2BQ9P265 1576 aa12.06□□□□□ -0.48
LRRC28-211ENST00000558890 ARID3CA6NKF2 412 aa12.06□□□□□ -0.48
LRRC28-211ENST00000558890 CCDC18Q5T9S5 1454 aa12.06□□□□□ -0.48
LRRC28-211ENST00000558890 KIF13AQ9H1H9 1805 aa12.06□□□□□ -0.48
LRRC28-211ENST00000558890 PCF11O94913 1555 aaKnown RBP12.05□□□□□ -0.48
LRRC28-211ENST00000558890 GLI2P10070 1586 aa12.05□□□□□ -0.48
LRRC28-211ENST00000558890 WDR7Q9Y4E6 1490 aa12.04□□□□□ -0.48
LRRC28-211ENST00000558890 CFAP43Q8NDM7 1665 aa12.03□□□□□ -0.48
LRRC28-211ENST00000558890 KCNH8Q96L42 1107 aa12.02□□□□□ -0.49
LRRC28-211ENST00000558890 PCGF6Q9BYE7 350 aa12.02□□□□□ -0.49
LRRC28-211ENST00000558890 PLEKHD1A6NEE1 506 aa11.99□□□□□ -0.49
LRRC28-211ENST00000558890 LRRIQ1Q96JM4 1722 aa11.99□□□□□ -0.49
LRRC28-211ENST00000558890 CDK13Q14004 1512 aaKnown RBP11.98□□□□□ -0.49
LRRC28-211ENST00000558890 HRCP23327 699 aa11.97□□□□□ -0.49
LRRC28-211ENST00000558890 TIAM1Q13009 1591 aa11.96□□□□□ -0.49
LRRC28-211ENST00000558890 TRIM26Q12899 539 aaPredicted RBP11.96□□□□□ -0.49
LRRC28-211ENST00000558890 PPRC1Q5VV67 1664 aaKnown RBP11.96□□□□□ -0.5
LRRC28-211ENST00000558890 COL17A1Q9UMD9 1497 aaPredicted RBP11.95□□□□□ -0.5
LRRC28-211ENST00000558890 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.95□□□□□ -0.5
LRRC28-211ENST00000558890 HNRNPUL2Q1KMD3 747 aaKnown RBP11.95□□□□□ -0.5
LRRC28-211ENST00000558890 MAGI3Q5TCQ9 1506 aa11.95□□□□□ -0.5
LRRC28-211ENST00000558890 CD109Q6YHK3 1445 aa11.94□□□□□ -0.5
LRRC28-211ENST00000558890 MAP3K4Q9Y6R4 1608 aa11.94□□□□□ -0.5
LRRC28-211ENST00000558890 ATP1B4Q9UN42 357 aaPredicted RBP11.94□□□□□ -0.5
LRRC28-211ENST00000558890 EHBP1L1Q8N3D4 1523 aa11.93□□□□□ -0.5
LRRC28-211ENST00000558890 ABCA9Q8IUA7 1624 aa11.91□□□□□ -0.5
LRRC28-211ENST00000558890 CDK11AQ9UQ88 783 aaPredicted RBP11.91□□□□□ -0.5
LRRC28-211ENST00000558890 TROQ12816 1431 aaPredicted RBP11.91□□□□□ -0.5
LRRC28-211ENST00000558890 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.9□□□□□ -0.5
LRRC28-211ENST00000558890 KIF14Q15058 1648 aa11.89□□□□□ -0.51
LRRC28-211ENST00000558890 TSPOAP1O95153 1857 aa11.89□□□□□ -0.51
LRRC28-211ENST00000558890 SUPT6HQ7KZ85 1726 aaKnown RBP11.88□□□□□ -0.51
LRRC28-211ENST00000558890 LRRC9Q6ZRR7 1453 aa11.88□□□□□ -0.51
LRRC28-211ENST00000558890 PLCH2O75038 1416 aa11.87□□□□□ -0.51
LRRC28-211ENST00000558890 ARAP3Q8WWN8 1544 aa11.87□□□□□ -0.51
LRRC28-211ENST00000558890 PHLDB1Q86UU1 1377 aa11.86□□□□□ -0.51
LRRC28-211ENST00000558890 TEX14Q8IWB6 1497 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms