RNA–Protein interactions for RNA: ENST00000558763.1

SMAD3-207, Transcript of SMAD family member 3, humanhuman

TSL 2

Gene SMAD3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-207ENST00000558763 CLIP1P30622 1438 aa20.49■□□□□ 0.87
SMAD3-207ENST00000558763 PCGF6Q9BYE7 350 aa20.47■□□□□ 0.87
SMAD3-207ENST00000558763 CEP170Q5SW79 1584 aa20.42■□□□□ 0.86
SMAD3-207ENST00000558763 TRIM26Q12899 539 aaPredicted RBP20.41■□□□□ 0.86
SMAD3-207ENST00000558763 CTTNBP2Q8WZ74 1663 aa20.41■□□□□ 0.86
SMAD3-207ENST00000558763 NUP160Q12769 1436 aa20.37■□□□□ 0.85
SMAD3-207ENST00000558763 VPS8Q8N3P4 1428 aa20.36■□□□□ 0.85
SMAD3-207ENST00000558763 ARAP1Q96P48 1450 aa20.35■□□□□ 0.85
SMAD3-207ENST00000558763 RANGAP1P46060 587 aaPredicted RBP20.35■□□□□ 0.85
SMAD3-207ENST00000558763 IQGAP2Q13576 1575 aa20.32■□□□□ 0.84
SMAD3-207ENST00000558763 KIAA0586Q9BVV6 1533 aa20.31■□□□□ 0.84
SMAD3-207ENST00000558763 ARHGAP35Q9NRY4 1499 aa20.3■□□□□ 0.84
SMAD3-207ENST00000558763 PPARGC1BQ86YN6 1023 aaKnown RBP20.28■□□□□ 0.84
SMAD3-207ENST00000558763 CLASP1Q7Z460 1538 aa20.26■□□□□ 0.83
SMAD3-207ENST00000558763 OSCARQ8IYS5 282 aa20.25■□□□□ 0.83
SMAD3-207ENST00000558763 UGGT2Q9NYU1 1516 aa20.19■□□□□ 0.82
SMAD3-207ENST00000558763 JPH4Q96JJ6 628 aa20.18■□□□□ 0.82
SMAD3-207ENST00000558763 SHROOM2Q13796 1616 aa20.17■□□□□ 0.82
SMAD3-207ENST00000558763 SAMD9Q5K651 1589 aa20.16■□□□□ 0.82
SMAD3-207ENST00000558763 EFCAB5A4FU69 1503 aa20.15■□□□□ 0.82
SMAD3-207ENST00000558763 P3H3Q8IVL6 736 aa20.15■□□□□ 0.82
SMAD3-207ENST00000558763 DISP1Q96F81 1524 aa20.13■□□□□ 0.81
SMAD3-207ENST00000558763 KIAA0556O60303 1618 aa20.12■□□□□ 0.81
SMAD3-207ENST00000558763 PRG4Q92954 1404 aaPredicted RBP20.12■□□□□ 0.81
SMAD3-207ENST00000558763 FHOD3Q2V2M9 1422 aa20.11■□□□□ 0.81
SMAD3-207ENST00000558763 ERCC6L2Q5T890 1561 aa20.09■□□□□ 0.81
SMAD3-207ENST00000558763 CARMIL2Q6F5E8 1435 aa20.08■□□□□ 0.81
SMAD3-207ENST00000558763 TTBK1Q5TCY1 1321 aaPredicted RBP20.06■□□□□ 0.8
SMAD3-207ENST00000558763 HRCP23327 699 aa20.05■□□□□ 0.8
SMAD3-207ENST00000558763 PCF11O94913 1555 aaKnown RBP20.02■□□□□ 0.79
SMAD3-207ENST00000558763 MAP3K1Q13233 1512 aa19.98■□□□□ 0.79
SMAD3-207ENST00000558763 ARHGEF11O15085 1522 aa19.97■□□□□ 0.79
SMAD3-207ENST00000558763 TIAM1Q13009 1591 aa19.97■□□□□ 0.79
SMAD3-207ENST00000558763 FMN1Q68DA7 1419 aa19.96■□□□□ 0.79
SMAD3-207ENST00000558763 CFAP43Q8NDM7 1665 aa19.96■□□□□ 0.79
SMAD3-207ENST00000558763 APLP2Q06481 763 aa19.95■□□□□ 0.78
SMAD3-207ENST00000558763 KANK4Q5T7N3 995 aaPredicted RBP19.95■□□□□ 0.78
SMAD3-207ENST00000558763 PTPRGP23470 1445 aa19.93■□□□□ 0.78
SMAD3-207ENST00000558763 FYCO1Q9BQS8 1478 aa19.93■□□□□ 0.78
SMAD3-207ENST00000558763 RIMBP3CA6NJZ7 1639 aa19.92■□□□□ 0.78
SMAD3-207ENST00000558763 RIMBP3BA6NNM3 1639 aa19.92■□□□□ 0.78
SMAD3-207ENST00000558763 RIMBP3Q9UFD9 1639 aa19.92■□□□□ 0.78
SMAD3-207ENST00000558763 CASKIN1Q8WXD9 1431 aa19.91■□□□□ 0.78
SMAD3-207ENST00000558763 PLB1Q6P1J6 1458 aa19.89■□□□□ 0.78
SMAD3-207ENST00000558763 ATP1B4Q9UN42 357 aaPredicted RBP19.88■□□□□ 0.77
SMAD3-207ENST00000558763 LRRIQ1Q96JM4 1722 aa19.88■□□□□ 0.77
SMAD3-207ENST00000558763 RAPGEF6Q8TEU7 1601 aa19.87■□□□□ 0.77
SMAD3-207ENST00000558763 LRRC9Q6ZRR7 1453 aa19.85■□□□□ 0.77
SMAD3-207ENST00000558763 ABCA8O94911 1581 aa19.84■□□□□ 0.77
SMAD3-207ENST00000558763 HECW1Q76N89 1606 aa19.83■□□□□ 0.77
SMAD3-207ENST00000558763 ARID3CA6NKF2 412 aa19.82■□□□□ 0.76
SMAD3-207ENST00000558763 UACAQ9BZF9 1416 aa19.81■□□□□ 0.76
SMAD3-207ENST00000558763 RRBP1Q9P2E9 1410 aaKnown RBP19.81■□□□□ 0.76
SMAD3-207ENST00000558763 NUP153P49790 1475 aaKnown RBP19.8■□□□□ 0.76
SMAD3-207ENST00000558763 ABCC2Q92887 1545 aa19.79■□□□□ 0.76
SMAD3-207ENST00000558763 CYB5RLQ6IPT4 315 aa19.77■□□□□ 0.75
SMAD3-207ENST00000558763 ADCY10Q96PN6 1610 aa19.76■□□□□ 0.75
SMAD3-207ENST00000558763 CDK13Q14004 1512 aaKnown RBP19.76■□□□□ 0.75
SMAD3-207ENST00000558763 EPRSP07814 1512 aaKnown RBP19.75■□□□□ 0.75
SMAD3-207ENST00000558763 UHRF1BP1LA0JNW5 1464 aa19.73■□□□□ 0.75
SMAD3-207ENST00000558763 CCDC18Q5T9S5 1454 aa19.73■□□□□ 0.75
SMAD3-207ENST00000558763 DNAJC5Q9H3Z4 198 aa19.72■□□□□ 0.75
SMAD3-207ENST00000558763 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.71■□□□□ 0.75
SMAD3-207ENST00000558763 HNRNPUL2Q1KMD3 747 aaKnown RBP19.71■□□□□ 0.75
SMAD3-207ENST00000558763 PHLDB1Q86UU1 1377 aa19.69■□□□□ 0.74
SMAD3-207ENST00000558763 ATP10BO94823 1461 aa19.69■□□□□ 0.74
SMAD3-207ENST00000558763 ZCCHC11Q5TAX3 1644 aaKnown RBP19.68■□□□□ 0.74
SMAD3-207ENST00000558763 CCNB3Q8WWL7 1395 aa19.67■□□□□ 0.74
SMAD3-207ENST00000558763 MAGI3Q5TCQ9 1506 aa19.66■□□□□ 0.74
SMAD3-207ENST00000558763 KDM5BQ9UGL1 1544 aa19.66■□□□□ 0.74
SMAD3-207ENST00000558763 EHBP1L1Q8N3D4 1523 aa19.62■□□□□ 0.73
SMAD3-207ENST00000558763 ZEB1P37275 1124 aaPredicted RBP19.61■□□□□ 0.73
SMAD3-207ENST00000558763 MTUS2Q5JR59 1369 aa19.6■□□□□ 0.73
SMAD3-207ENST00000558763 NPM1P06748 294 aaKnown RBP eCLIP19.59■□□□□ 0.73
SMAD3-207ENST00000558763 CDK11AQ9UQ88 783 aaPredicted RBP19.58■□□□□ 0.73
SMAD3-207ENST00000558763 SUPT6HQ7KZ85 1726 aaKnown RBP19.58■□□□□ 0.72
SMAD3-207ENST00000558763 NCOA2Q15596 1464 aa19.56■□□□□ 0.72
SMAD3-207ENST00000558763 PLEKHD1A6NEE1 506 aa19.55■□□□□ 0.72
SMAD3-207ENST00000558763 TROQ12816 1431 aaPredicted RBP19.54■□□□□ 0.72
SMAD3-207ENST00000558763 CCER1Q8TC90 406 aaPredicted RBP19.53■□□□□ 0.72
SMAD3-207ENST00000558763 ASXL2Q76L83 1435 aa19.53■□□□□ 0.72
SMAD3-207ENST00000558763 FGD6Q6ZV73 1430 aa19.52■□□□□ 0.71
SMAD3-207ENST00000558763 KIF14Q15058 1648 aa19.52■□□□□ 0.71
SMAD3-207ENST00000558763 WDR7Q9Y4E6 1490 aa19.51■□□□□ 0.71
SMAD3-207ENST00000558763 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.51■□□□□ 0.71
SMAD3-207ENST00000558763 MYOM3Q5VTT5 1437 aa19.49■□□□□ 0.71
SMAD3-207ENST00000558763 MAPKBP1O60336 1514 aa19.48■□□□□ 0.71
SMAD3-207ENST00000558763 KCNH8Q96L42 1107 aa19.48■□□□□ 0.71
SMAD3-207ENST00000558763 TTC37Q6PGP7 1564 aa19.43■□□□□ 0.7
SMAD3-207ENST00000558763 PTPN23Q9H3S7 1636 aa19.42■□□□□ 0.7
SMAD3-207ENST00000558763 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.41■□□□□ 0.7
SMAD3-207ENST00000558763 TCOF1Q13428 1488 aaKnown RBP19.4■□□□□ 0.7
SMAD3-207ENST00000558763 ABCC10Q5T3U5 1492 aa19.4■□□□□ 0.7
SMAD3-207ENST00000558763 FAM50AQ14320 339 aaKnown RBP19.39■□□□□ 0.7
SMAD3-207ENST00000558763 ITGAEP38570 1179 aa19.38■□□□□ 0.69
SMAD3-207ENST00000558763 DHX57Q6P158 1386 aaKnown RBP19.38■□□□□ 0.69
SMAD3-207ENST00000558763 PTPRKQ15262 1439 aa19.36■□□□□ 0.69
SMAD3-207ENST00000558763 CDC42BPAQ5VT25 1732 aa19.36■□□□□ 0.69
SMAD3-207ENST00000558763 DIP2BQ9P265 1576 aa19.36■□□□□ 0.69
SMAD3-207ENST00000558763 ABCA9Q8IUA7 1624 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms