RNA–Protein interactions for RNA: ENST00000558020.1

SNRPA1-204, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 3

Gene SNRPA1, Length 466 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-204ENST00000558020 CUL7Q14999 1698 aa23.51■■□□□ 1.35
SNRPA1-204ENST00000558020 NPM1P06748 294 aaKnown RBP eCLIP23.5■■□□□ 1.35
SNRPA1-204ENST00000558020 RUSC2Q8N2Y8 1516 aa23.49■■□□□ 1.35
SNRPA1-204ENST00000558020 KIAA0586Q9BVV6 1533 aa23.49■■□□□ 1.35
SNRPA1-204ENST00000558020 CARMIL1Q5VZK9 1371 aa23.45■■□□□ 1.34
SNRPA1-204ENST00000558020 CARMIL2Q6F5E8 1435 aa23.33■■□□□ 1.32
SNRPA1-204ENST00000558020 FAM69CQ0P6D2 419 aa23.3■■□□□ 1.32
SNRPA1-204ENST00000558020 PTPRGP23470 1445 aa23.3■■□□□ 1.32
SNRPA1-204ENST00000558020 AEBP2Q6ZN18 517 aaPredicted RBP23.27■■□□□ 1.32
SNRPA1-204ENST00000558020 MAPKBP1O60336 1514 aa23.25■■□□□ 1.31
SNRPA1-204ENST00000558020 KIF13AQ9H1H9 1805 aa23.25■■□□□ 1.31
SNRPA1-204ENST00000558020 TTBK1Q5TCY1 1321 aaPredicted RBP23.25■■□□□ 1.31
SNRPA1-204ENST00000558020 ADCY10Q96PN6 1610 aa23.25■■□□□ 1.31
SNRPA1-204ENST00000558020 TNIKQ9UKE5 1360 aa23.25■■□□□ 1.31
SNRPA1-204ENST00000558020 ABCC10Q5T3U5 1492 aa23.24■■□□□ 1.31
SNRPA1-204ENST00000558020 IQGAP2Q13576 1575 aa23.23■■□□□ 1.31
SNRPA1-204ENST00000558020 RAPGEF2Q9Y4G8 1499 aa23.23■■□□□ 1.31
SNRPA1-204ENST00000558020 DIP2BQ9P265 1576 aa23.13■■□□□ 1.29
SNRPA1-204ENST00000558020 ABCC2Q92887 1545 aa23.11■■□□□ 1.29
SNRPA1-204ENST00000558020 UACAQ9BZF9 1416 aa23.09■■□□□ 1.29
SNRPA1-204ENST00000558020 DISP1Q96F81 1524 aa23.09■■□□□ 1.29
SNRPA1-204ENST00000558020 UGGT2Q9NYU1 1516 aa23.08■■□□□ 1.29
SNRPA1-204ENST00000558020 UHRF1BP1LA0JNW5 1464 aa23.08■■□□□ 1.29
SNRPA1-204ENST00000558020 PLB1Q6P1J6 1458 aa23.05■■□□□ 1.28
SNRPA1-204ENST00000558020 ASXL2Q76L83 1435 aa23.03■■□□□ 1.28
SNRPA1-204ENST00000558020 FAM9AQ8IZU1 332 aaPredicted RBP23.02■■□□□ 1.28
SNRPA1-204ENST00000558020 GOLGA3Q08378 1498 aa22.99■■□□□ 1.27
SNRPA1-204ENST00000558020 TSPOAP1O95153 1857 aa22.98■■□□□ 1.27
SNRPA1-204ENST00000558020 KIAA0556O60303 1618 aa22.98■■□□□ 1.27
SNRPA1-204ENST00000558020 PRXQ9BXM0 1461 aa22.97■■□□□ 1.27
SNRPA1-204ENST00000558020 KDM5BQ9UGL1 1544 aa22.96■■□□□ 1.27
SNRPA1-204ENST00000558020 KDM6BO15054 1643 aa22.96■■□□□ 1.27
SNRPA1-204ENST00000558020 CTTNBP2Q8WZ74 1663 aa22.96■■□□□ 1.27
SNRPA1-204ENST00000558020 GLI2P10070 1586 aa22.93■■□□□ 1.26
SNRPA1-204ENST00000558020 CSRNP3Q8WYN3 585 aa22.92■■□□□ 1.26
SNRPA1-204ENST00000558020 EPRSP07814 1512 aaKnown RBP22.87■■□□□ 1.25
SNRPA1-204ENST00000558020 ZCCHC11Q5TAX3 1644 aaKnown RBP22.86■■□□□ 1.25
SNRPA1-204ENST00000558020 TEX14Q8IWB6 1497 aa22.82■■□□□ 1.24
SNRPA1-204ENST00000558020 WDR7Q9Y4E6 1490 aa22.81■■□□□ 1.24
SNRPA1-204ENST00000558020 EEA1Q15075 1411 aa22.81■■□□□ 1.24
SNRPA1-204ENST00000558020 ABCA8O94911 1581 aa22.78■■□□□ 1.24
SNRPA1-204ENST00000558020 P3H3Q8IVL6 736 aa22.78■■□□□ 1.24
SNRPA1-204ENST00000558020 KCNH8Q96L42 1107 aa22.78■■□□□ 1.24
SNRPA1-204ENST00000558020 MAP3K4Q9Y6R4 1608 aa22.78■■□□□ 1.24
SNRPA1-204ENST00000558020 PPRC1Q5VV67 1664 aaKnown RBP22.77■■□□□ 1.24
SNRPA1-204ENST00000558020 KDM4FA0A1W2PPD8 638 aa22.72■■□□□ 1.23
SNRPA1-204ENST00000558020 CD109Q6YHK3 1445 aa22.71■■□□□ 1.23
SNRPA1-204ENST00000558020 COL17A1Q9UMD9 1497 aaPredicted RBP22.66■■□□□ 1.22
SNRPA1-204ENST00000558020 ARID3CA6NKF2 412 aa22.66■■□□□ 1.22
SNRPA1-204ENST00000558020 RANGAP1P46060 587 aaPredicted RBP22.65■■□□□ 1.22
SNRPA1-204ENST00000558020 MAGI3Q5TCQ9 1506 aa22.65■■□□□ 1.22
SNRPA1-204ENST00000558020 CFAP43Q8NDM7 1665 aa22.65■■□□□ 1.22
SNRPA1-204ENST00000558020 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.64■■□□□ 1.21
SNRPA1-204ENST00000558020 HNRNPUL2Q1KMD3 747 aaKnown RBP22.64■■□□□ 1.21
SNRPA1-204ENST00000558020 ATP10BO94823 1461 aa22.64■■□□□ 1.21
SNRPA1-204ENST00000558020 SAMD9Q5K651 1589 aa22.63■■□□□ 1.21
SNRPA1-204ENST00000558020 RAPGEF6Q8TEU7 1601 aa22.57■■□□□ 1.2
SNRPA1-204ENST00000558020 PHLDB1Q86UU1 1377 aa22.54■■□□□ 1.2
SNRPA1-204ENST00000558020 ADGRL1O94910 1474 aa22.54■■□□□ 1.2
SNRPA1-204ENST00000558020 KIF21BO75037 1637 aa22.53■■□□□ 1.2
SNRPA1-204ENST00000558020 PLEKHD1A6NEE1 506 aa22.52■■□□□ 1.2
SNRPA1-204ENST00000558020 UBTFP17480 764 aaKnown RBP22.51■■□□□ 1.19
SNRPA1-204ENST00000558020 FHOD3Q2V2M9 1422 aa22.5■■□□□ 1.19
SNRPA1-204ENST00000558020 EFCAB5A4FU69 1503 aa22.49■■□□□ 1.19
SNRPA1-204ENST00000558020 CHIC1Q5VXU3 224 aa22.49■■□□□ 1.19
SNRPA1-204ENST00000558020 ARAP3Q8WWN8 1544 aa22.48■■□□□ 1.19
SNRPA1-204ENST00000558020 NUP153P49790 1475 aaKnown RBP22.47■■□□□ 1.19
SNRPA1-204ENST00000558020 ABCA9Q8IUA7 1624 aa22.47■■□□□ 1.19
SNRPA1-204ENST00000558020 EHMT2Q96KQ7 1210 aa22.42■■□□□ 1.18
SNRPA1-204ENST00000558020 NEO1Q92859 1461 aa22.41■■□□□ 1.18
SNRPA1-204ENST00000558020 RAPGEF3O95398 923 aa22.38■■□□□ 1.17
SNRPA1-204ENST00000558020 ATP1B4Q9UN42 357 aaPredicted RBP22.36■■□□□ 1.17
SNRPA1-204ENST00000558020 FMN1Q68DA7 1419 aa22.35■■□□□ 1.17
SNRPA1-204ENST00000558020 CDK11AQ9UQ88 783 aaPredicted RBP22.34■■□□□ 1.17
SNRPA1-204ENST00000558020 AKNAQ7Z591 1439 aa22.27■■□□□ 1.16
SNRPA1-204ENST00000558020 FANCAO15360 1455 aa22.27■■□□□ 1.16
SNRPA1-204ENST00000558020 DENND4BO75064 1496 aaPredicted RBP22.27■■□□□ 1.16
SNRPA1-204ENST00000558020 ARID4BQ4LE39 1312 aaPredicted RBP22.27■■□□□ 1.16
SNRPA1-204ENST00000558020 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.26■■□□□ 1.15
SNRPA1-204ENST00000558020 CFAP74Q9C0B2 1584 aa22.25■■□□□ 1.15
SNRPA1-204ENST00000558020 ARHGAP35Q9NRY4 1499 aa22.25■■□□□ 1.15
SNRPA1-204ENST00000558020 CDK13Q14004 1512 aaKnown RBP22.24■■□□□ 1.15
SNRPA1-204ENST00000558020 HECW1Q76N89 1606 aa22.23■■□□□ 1.15
SNRPA1-204ENST00000558020 EFCAB2Q5VUJ9 269 aa22.19■■□□□ 1.14
SNRPA1-204ENST00000558020 PLCH2O75038 1416 aa22.19■■□□□ 1.14
SNRPA1-204ENST00000558020 TTC37Q6PGP7 1564 aa22.18■■□□□ 1.14
SNRPA1-204ENST00000558020 FRMPD1Q5SYB0 1578 aa22.17■■□□□ 1.14
SNRPA1-204ENST00000558020 HECW2Q9P2P5 1572 aa22.17■■□□□ 1.14
SNRPA1-204ENST00000558020 CLIP1P30622 1438 aa22.15■■□□□ 1.14
SNRPA1-204ENST00000558020 RICTORQ6R327 1708 aa22.14■■□□□ 1.14
SNRPA1-204ENST00000558020 MAGI2Q86UL8 1455 aa22.14■■□□□ 1.13
SNRPA1-204ENST00000558020 SCAPERQ9BY12 1400 aa22.13■■□□□ 1.13
SNRPA1-204ENST00000558020 ADAMTSL3P82987 1691 aa22.12■■□□□ 1.13
SNRPA1-204ENST00000558020 PTPRMP28827 1452 aa22.12■■□□□ 1.13
SNRPA1-204ENST00000558020 TROQ12816 1431 aaPredicted RBP22.12■■□□□ 1.13
SNRPA1-204ENST00000558020 POGZQ7Z3K3 1410 aa22.12■■□□□ 1.13
SNRPA1-204ENST00000558020 ARHGEF40Q8TER5 1519 aa22.11■■□□□ 1.13
SNRPA1-204ENST00000558020 BCORL1Q5H9F3 1711 aa22.09■■□□□ 1.13
SNRPA1-204ENST00000558020 ZMYM4Q5VZL5 1548 aa22.09■■□□□ 1.13
SNRPA1-204ENST00000558020 KIF14Q15058 1648 aa22.09■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms