RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 JPH4Q96JJ6 628 aa25.41■■□□□ 1.66
SHMT2-235ENST00000557740 CUL7Q14999 1698 aa25.39■■□□□ 1.65
SHMT2-235ENST00000557740 KIAA0586Q9BVV6 1533 aa25.32■■□□□ 1.64
SHMT2-235ENST00000557740 CARMIL1Q5VZK9 1371 aa25.27■■□□□ 1.64
SHMT2-235ENST00000557740 NPM1P06748 294 aaKnown RBP eCLIP25.15■■□□□ 1.62
SHMT2-235ENST00000557740 ADCY10Q96PN6 1610 aa25.1■■□□□ 1.61
SHMT2-235ENST00000557740 IQGAP2Q13576 1575 aa25.1■■□□□ 1.61
SHMT2-235ENST00000557740 CARMIL2Q6F5E8 1435 aa25.09■■□□□ 1.61
SHMT2-235ENST00000557740 MAPKBP1O60336 1514 aa25.07■■□□□ 1.6
SHMT2-235ENST00000557740 PTPRGP23470 1445 aa25.07■■□□□ 1.6
SHMT2-235ENST00000557740 RAPGEF2Q9Y4G8 1499 aa25.07■■□□□ 1.6
SHMT2-235ENST00000557740 TTBK1Q5TCY1 1321 aaPredicted RBP25.04■■□□□ 1.6
SHMT2-235ENST00000557740 TNIKQ9UKE5 1360 aa25.04■■□□□ 1.6
SHMT2-235ENST00000557740 ABCC10Q5T3U5 1492 aa25.03■■□□□ 1.6
SHMT2-235ENST00000557740 KIF13AQ9H1H9 1805 aa25.03■■□□□ 1.6
SHMT2-235ENST00000557740 FAM69CQ0P6D2 419 aa25.01■■□□□ 1.59
SHMT2-235ENST00000557740 DIP2BQ9P265 1576 aa24.96■■□□□ 1.59
SHMT2-235ENST00000557740 DISP1Q96F81 1524 aa24.94■■□□□ 1.58
SHMT2-235ENST00000557740 ABCC2Q92887 1545 aa24.92■■□□□ 1.58
SHMT2-235ENST00000557740 UGGT2Q9NYU1 1516 aa24.92■■□□□ 1.58
SHMT2-235ENST00000557740 UHRF1BP1LA0JNW5 1464 aa24.88■■□□□ 1.57
SHMT2-235ENST00000557740 UACAQ9BZF9 1416 aa24.87■■□□□ 1.57
SHMT2-235ENST00000557740 KIAA0556O60303 1618 aa24.86■■□□□ 1.57
SHMT2-235ENST00000557740 AEBP2Q6ZN18 517 aaPredicted RBP24.85■■□□□ 1.57
SHMT2-235ENST00000557740 PRXQ9BXM0 1461 aa24.83■■□□□ 1.56
SHMT2-235ENST00000557740 ASXL2Q76L83 1435 aa24.82■■□□□ 1.56
SHMT2-235ENST00000557740 CTTNBP2Q8WZ74 1663 aa24.81■■□□□ 1.56
SHMT2-235ENST00000557740 PLB1Q6P1J6 1458 aa24.81■■□□□ 1.56
SHMT2-235ENST00000557740 GOLGA3Q08378 1498 aa24.77■■□□□ 1.56
SHMT2-235ENST00000557740 KDM5BQ9UGL1 1544 aa24.76■■□□□ 1.55
SHMT2-235ENST00000557740 KDM6BO15054 1643 aa24.73■■□□□ 1.55
SHMT2-235ENST00000557740 TSPOAP1O95153 1857 aa24.72■■□□□ 1.55
SHMT2-235ENST00000557740 GLI2P10070 1586 aa24.71■■□□□ 1.55
SHMT2-235ENST00000557740 ZCCHC11Q5TAX3 1644 aaKnown RBP24.68■■□□□ 1.54
SHMT2-235ENST00000557740 CSRNP3Q8WYN3 585 aa24.66■■□□□ 1.54
SHMT2-235ENST00000557740 EPRSP07814 1512 aaKnown RBP24.66■■□□□ 1.54
SHMT2-235ENST00000557740 EEA1Q15075 1411 aa24.62■■□□□ 1.53
SHMT2-235ENST00000557740 WDR7Q9Y4E6 1490 aa24.61■■□□□ 1.53
SHMT2-235ENST00000557740 ABCA8O94911 1581 aa24.61■■□□□ 1.53
SHMT2-235ENST00000557740 PPRC1Q5VV67 1664 aaKnown RBP24.59■■□□□ 1.53
SHMT2-235ENST00000557740 FAM9AQ8IZU1 332 aaPredicted RBP24.58■■□□□ 1.53
SHMT2-235ENST00000557740 MAP3K4Q9Y6R4 1608 aa24.57■■□□□ 1.52
SHMT2-235ENST00000557740 TEX14Q8IWB6 1497 aa24.55■■□□□ 1.52
SHMT2-235ENST00000557740 P3H3Q8IVL6 736 aa24.53■■□□□ 1.52
SHMT2-235ENST00000557740 SAMD9Q5K651 1589 aa24.49■■□□□ 1.51
SHMT2-235ENST00000557740 KCNH8Q96L42 1107 aa24.46■■□□□ 1.51
SHMT2-235ENST00000557740 ARID3CA6NKF2 412 aa24.45■■□□□ 1.5
SHMT2-235ENST00000557740 CD109Q6YHK3 1445 aa24.44■■□□□ 1.5
SHMT2-235ENST00000557740 COL17A1Q9UMD9 1497 aaPredicted RBP24.43■■□□□ 1.5
SHMT2-235ENST00000557740 RANGAP1P46060 587 aaPredicted RBP24.42■■□□□ 1.5
SHMT2-235ENST00000557740 CFAP43Q8NDM7 1665 aa24.4■■□□□ 1.5
SHMT2-235ENST00000557740 MAGI3Q5TCQ9 1506 aa24.4■■□□□ 1.5
SHMT2-235ENST00000557740 ATP10BO94823 1461 aa24.39■■□□□ 1.5
SHMT2-235ENST00000557740 KIF21BO75037 1637 aa24.39■■□□□ 1.49
SHMT2-235ENST00000557740 KDM4FA0A1W2PPD8 638 aa24.38■■□□□ 1.49
SHMT2-235ENST00000557740 RAPGEF6Q8TEU7 1601 aa24.38■■□□□ 1.49
SHMT2-235ENST00000557740 FHOD3Q2V2M9 1422 aa24.36■■□□□ 1.49
SHMT2-235ENST00000557740 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.32■■□□□ 1.48
SHMT2-235ENST00000557740 HNRNPUL2Q1KMD3 747 aaKnown RBP24.32■■□□□ 1.48
SHMT2-235ENST00000557740 EFCAB5A4FU69 1503 aa24.3■■□□□ 1.48
SHMT2-235ENST00000557740 CHIC1Q5VXU3 224 aa24.3■■□□□ 1.48
SHMT2-235ENST00000557740 NUP153P49790 1475 aaKnown RBP24.3■■□□□ 1.48
SHMT2-235ENST00000557740 ADGRL1O94910 1474 aa24.28■■□□□ 1.48
SHMT2-235ENST00000557740 ABCA9Q8IUA7 1624 aa24.24■■□□□ 1.47
SHMT2-235ENST00000557740 EHMT2Q96KQ7 1210 aa24.24■■□□□ 1.47
SHMT2-235ENST00000557740 UBTFP17480 764 aaKnown RBP24.23■■□□□ 1.47
SHMT2-235ENST00000557740 ARAP3Q8WWN8 1544 aa24.2■■□□□ 1.46
SHMT2-235ENST00000557740 PHLDB1Q86UU1 1377 aa24.18■■□□□ 1.46
SHMT2-235ENST00000557740 PLEKHD1A6NEE1 506 aa24.16■■□□□ 1.46
SHMT2-235ENST00000557740 NEO1Q92859 1461 aa24.14■■□□□ 1.46
SHMT2-235ENST00000557740 FMN1Q68DA7 1419 aa24.1■■□□□ 1.45
SHMT2-235ENST00000557740 CDK13Q14004 1512 aaKnown RBP24.08■■□□□ 1.45
SHMT2-235ENST00000557740 ARHGAP35Q9NRY4 1499 aa24.07■■□□□ 1.44
SHMT2-235ENST00000557740 RAPGEF3O95398 923 aa24.06■■□□□ 1.44
SHMT2-235ENST00000557740 ATP1B4Q9UN42 357 aaPredicted RBP24.05■■□□□ 1.44
SHMT2-235ENST00000557740 HECW1Q76N89 1606 aa24.05■■□□□ 1.44
SHMT2-235ENST00000557740 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.03■■□□□ 1.44
SHMT2-235ENST00000557740 FANCAO15360 1455 aa24.01■■□□□ 1.43
SHMT2-235ENST00000557740 TTC37Q6PGP7 1564 aa24.01■■□□□ 1.43
SHMT2-235ENST00000557740 FRMPD1Q5SYB0 1578 aa24■■□□□ 1.43
SHMT2-235ENST00000557740 CFAP74Q9C0B2 1584 aa24■■□□□ 1.43
SHMT2-235ENST00000557740 AKNAQ7Z591 1439 aa23.99■■□□□ 1.43
SHMT2-235ENST00000557740 DENND4BO75064 1496 aaPredicted RBP23.99■■□□□ 1.43
SHMT2-235ENST00000557740 CDK11AQ9UQ88 783 aaPredicted RBP23.96■■□□□ 1.43
SHMT2-235ENST00000557740 ARHGEF40Q8TER5 1519 aa23.91■■□□□ 1.42
SHMT2-235ENST00000557740 ARID4BQ4LE39 1312 aaPredicted RBP23.9■■□□□ 1.42
SHMT2-235ENST00000557740 PLCH2O75038 1416 aa23.9■■□□□ 1.42
SHMT2-235ENST00000557740 HECW2Q9P2P5 1572 aa23.89■■□□□ 1.41
SHMT2-235ENST00000557740 RICTORQ6R327 1708 aa23.88■■□□□ 1.41
SHMT2-235ENST00000557740 CLIP1P30622 1438 aa23.88■■□□□ 1.41
SHMT2-235ENST00000557740 TROQ12816 1431 aaPredicted RBP23.87■■□□□ 1.41
SHMT2-235ENST00000557740 KIF14Q15058 1648 aa23.87■■□□□ 1.41
SHMT2-235ENST00000557740 ZMYM4Q5VZL5 1548 aa23.86■■□□□ 1.41
SHMT2-235ENST00000557740 CASKIN1Q8WXD9 1431 aa23.84■■□□□ 1.41
SHMT2-235ENST00000557740 SCAPERQ9BY12 1400 aa23.84■■□□□ 1.41
SHMT2-235ENST00000557740 ADAMTSL3P82987 1691 aa23.83■■□□□ 1.41
SHMT2-235ENST00000557740 PCF11O94913 1555 aaKnown RBP23.83■■□□□ 1.41
SHMT2-235ENST00000557740 ZFYVE16Q7Z3T8 1539 aa23.83■■□□□ 1.41
SHMT2-235ENST00000557740 POGZQ7Z3K3 1410 aa23.83■■□□□ 1.4
SHMT2-235ENST00000557740 CCDC18Q5T9S5 1454 aa23.82■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms