RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-222ENST00000556725 C1QBPQ07021 282 aaKnown RBP15.97■□□□□ 0.15
SYNE2-222ENST00000556725 PBRM1Q86U86 1689 aa15.93■□□□□ 0.14
SYNE2-222ENST00000556725 ERCC6L2Q5T890 1561 aa15.9■□□□□ 0.14
SYNE2-222ENST00000556725 ABCA10Q8WWZ4 1543 aa15.86■□□□□ 0.13
SYNE2-222ENST00000556725 RNF216Q9NWF9 866 aaPredicted RBP15.86■□□□□ 0.13
SYNE2-222ENST00000556725 ABCA5Q8WWZ7 1642 aa15.85■□□□□ 0.13
SYNE2-222ENST00000556725 CNKSR2Q8WXI2 1034 aa15.84■□□□□ 0.13
SYNE2-222ENST00000556725 GRIN2AQ12879 1464 aa15.82■□□□□ 0.12
SYNE2-222ENST00000556725 CEP170Q5SW79 1584 aa15.8■□□□□ 0.12
SYNE2-222ENST00000556725 NUP160Q12769 1436 aa15.78■□□□□ 0.12
SYNE2-222ENST00000556725 ADAMTS12P58397 1594 aa15.75■□□□□ 0.11
SYNE2-222ENST00000556725 WRNQ14191 1432 aaPredicted RBP eCLIP15.74■□□□□ 0.11
SYNE2-222ENST00000556725 KIF13AQ9H1H9 1805 aa15.73■□□□□ 0.11
SYNE2-222ENST00000556725 SHROOM2Q13796 1616 aa15.72■□□□□ 0.11
SYNE2-222ENST00000556725 FHAD1B1AJZ9 1412 aa15.71■□□□□ 0.11
SYNE2-222ENST00000556725 SUPT5HO00267 1087 aaKnown RBP15.69■□□□□ 0.1
SYNE2-222ENST00000556725 JPH4Q96JJ6 628 aa15.68■□□□□ 0.1
SYNE2-222ENST00000556725 PRG4Q92954 1404 aaPredicted RBP15.68■□□□□ 0.1
SYNE2-222ENST00000556725 TOP2BQ02880 1626 aa15.65■□□□□ 0.1
SYNE2-222ENST00000556725 BIVM-ERCC5R4GMW8 1640 aa15.65■□□□□ 0.1
SYNE2-222ENST00000556725 FAM69CQ0P6D2 419 aa15.64■□□□□ 0.09
SYNE2-222ENST00000556725 ERICH3Q5RHP9 1530 aa15.63■□□□□ 0.09
SYNE2-222ENST00000556725 ABCC10Q5T3U5 1492 aa15.59■□□□□ 0.09
SYNE2-222ENST00000556725 NPM1P06748 294 aaKnown RBP eCLIP15.58■□□□□ 0.08
SYNE2-222ENST00000556725 KDM4FA0A1W2PPD8 638 aa15.57■□□□□ 0.08
SYNE2-222ENST00000556725 DIP2BQ9P265 1576 aa15.53■□□□□ 0.08
SYNE2-222ENST00000556725 RUSC2Q8N2Y8 1516 aa15.53■□□□□ 0.08
SYNE2-222ENST00000556725 ADCY10Q96PN6 1610 aa15.53■□□□□ 0.08
SYNE2-222ENST00000556725 MAPKBP1O60336 1514 aa15.52■□□□□ 0.07
SYNE2-222ENST00000556725 TSPOAP1O95153 1857 aa15.5■□□□□ 0.07
SYNE2-222ENST00000556725 KDM6BO15054 1643 aa15.47■□□□□ 0.07
SYNE2-222ENST00000556725 KIAA0586Q9BVV6 1533 aa15.44■□□□□ 0.06
SYNE2-222ENST00000556725 IGF1RP08069 1367 aa15.44■□□□□ 0.06
SYNE2-222ENST00000556725 TTBK1Q5TCY1 1321 aaPredicted RBP15.43■□□□□ 0.06
SYNE2-222ENST00000556725 ILDR1Q86SU0 546 aaPredicted RBP15.41■□□□□ 0.06
SYNE2-222ENST00000556725 PTPRGP23470 1445 aa15.39■□□□□ 0.05
SYNE2-222ENST00000556725 KIF27Q86VH2 1401 aa15.34■□□□□ 0.05
SYNE2-222ENST00000556725 CUL7Q14999 1698 aa15.33■□□□□ 0.04
SYNE2-222ENST00000556725 PPRC1Q5VV67 1664 aaKnown RBP15.33■□□□□ 0.04
SYNE2-222ENST00000556725 ASXL2Q76L83 1435 aa15.33■□□□□ 0.04
SYNE2-222ENST00000556725 ABCC2Q92887 1545 aa15.32■□□□□ 0.04
SYNE2-222ENST00000556725 CARMIL1Q5VZK9 1371 aa15.31■□□□□ 0.04
SYNE2-222ENST00000556725 TNIKQ9UKE5 1360 aa15.31■□□□□ 0.04
SYNE2-222ENST00000556725 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.3■□□□□ 0.04
SYNE2-222ENST00000556725 COL17A1Q9UMD9 1497 aaPredicted RBP15.3■□□□□ 0.04
SYNE2-222ENST00000556725 ADGRL1O94910 1474 aa15.29■□□□□ 0.04
SYNE2-222ENST00000556725 GLI2P10070 1586 aa15.28■□□□□ 0.04
SYNE2-222ENST00000556725 PLB1Q6P1J6 1458 aa15.28■□□□□ 0.04
SYNE2-222ENST00000556725 CARMIL2Q6F5E8 1435 aa15.28■□□□□ 0.04
SYNE2-222ENST00000556725 UHRF1BP1LA0JNW5 1464 aa15.25■□□□□ 0.03
SYNE2-222ENST00000556725 UACAQ9BZF9 1416 aa15.25■□□□□ 0.03
SYNE2-222ENST00000556725 IQGAP2Q13576 1575 aa15.24■□□□□ 0.03
SYNE2-222ENST00000556725 POTEHQ6S545 545 aa15.23■□□□□ 0.03
SYNE2-222ENST00000556725 EPRSP07814 1512 aaKnown RBP15.22■□□□□ 0.03
SYNE2-222ENST00000556725 DISP1Q96F81 1524 aa15.22■□□□□ 0.03
SYNE2-222ENST00000556725 MAP3K4Q9Y6R4 1608 aa15.21■□□□□ 0.02
SYNE2-222ENST00000556725 KDM5BQ9UGL1 1544 aa15.2■□□□□ 0.02
SYNE2-222ENST00000556725 NCBP3Q53F19 620 aaKnown RBP15.19■□□□□ 0.02
SYNE2-222ENST00000556725 HECW2Q9P2P5 1572 aa15.18■□□□□ 0.02
SYNE2-222ENST00000556725 ZCCHC11Q5TAX3 1644 aaKnown RBP15.17■□□□□ 0.02
SYNE2-222ENST00000556725 TEX14Q8IWB6 1497 aa15.14■□□□□ 0.01
SYNE2-222ENST00000556725 UGGT2Q9NYU1 1516 aa15.13■□□□□ 0.01
SYNE2-222ENST00000556725 KIAA0556O60303 1618 aa15.1■□□□□ 0.01
SYNE2-222ENST00000556725 RAPGEF2Q9Y4G8 1499 aa15.1■□□□□ 0.01
SYNE2-222ENST00000556725 KCNH8Q96L42 1107 aa15.1■□□□□ 0.01
SYNE2-222ENST00000556725 WDR7Q9Y4E6 1490 aa15.09■□□□□ 0.01
SYNE2-222ENST00000556725 CD109Q6YHK3 1445 aa15.07■□□□□ 0
SYNE2-222ENST00000556725 MAGI3Q5TCQ9 1506 aa15.04■□□□□ -0
SYNE2-222ENST00000556725 CFAP43Q8NDM7 1665 aa15.02□□□□□ -0.01
SYNE2-222ENST00000556725 KIF21BO75037 1637 aa15□□□□□ -0.01
SYNE2-222ENST00000556725 ABCA8O94911 1581 aa15□□□□□ -0.01
SYNE2-222ENST00000556725 DSG3P32926 999 aa14.99□□□□□ -0.01
SYNE2-222ENST00000556725 ARID3CA6NKF2 412 aa14.98□□□□□ -0.01
SYNE2-222ENST00000556725 NPM3O75607 178 aaKnown RBP14.98□□□□□ -0.01
SYNE2-222ENST00000556725 CTTNBP2Q8WZ74 1663 aa14.97□□□□□ -0.01
SYNE2-222ENST00000556725 U3KPZ7 1027 aaPredicted RBP14.97□□□□□ -0.01
SYNE2-222ENST00000556725 FBXO41Q8TF61 875 aa14.96□□□□□ -0.01
SYNE2-222ENST00000556725 GOLGA3Q08378 1498 aa14.95□□□□□ -0.02
SYNE2-222ENST00000556725 ARAP3Q8WWN8 1544 aa14.94□□□□□ -0.02
SYNE2-222ENST00000556725 P3H3Q8IVL6 736 aa14.94□□□□□ -0.02
SYNE2-222ENST00000556725 RAPGEF3O95398 923 aa14.92□□□□□ -0.02
SYNE2-222ENST00000556725 ATP10BO94823 1461 aa14.92□□□□□ -0.02
SYNE2-222ENST00000556725 PTPRMP28827 1452 aa14.91□□□□□ -0.02
SYNE2-222ENST00000556725 ADAMTSL3P82987 1691 aa14.9□□□□□ -0.02
SYNE2-222ENST00000556725 SPINK5Q9NQ38 1064 aaPredicted RBP14.89□□□□□ -0.03
SYNE2-222ENST00000556725 PRXQ9BXM0 1461 aa14.88□□□□□ -0.03
SYNE2-222ENST00000556725 CAPN15O75808 1086 aa14.86□□□□□ -0.03
SYNE2-222ENST00000556725 ABCA9Q8IUA7 1624 aa14.85□□□□□ -0.03
SYNE2-222ENST00000556725 PHLDB1Q86UU1 1377 aa14.85□□□□□ -0.03
SYNE2-222ENST00000556725 ARID4BQ4LE39 1312 aaPredicted RBP14.84□□□□□ -0.03
SYNE2-222ENST00000556725 BCORL1Q5H9F3 1711 aa14.83□□□□□ -0.04
SYNE2-222ENST00000556725 FAM9AQ8IZU1 332 aaPredicted RBP14.82□□□□□ -0.04
SYNE2-222ENST00000556725 MADDQ8WXG6 1647 aa14.81□□□□□ -0.04
SYNE2-222ENST00000556725 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.81□□□□□ -0.04
SYNE2-222ENST00000556725 HNRNPUL2Q1KMD3 747 aaKnown RBP14.81□□□□□ -0.04
SYNE2-222ENST00000556725 FRMPD1Q5SYB0 1578 aa14.81□□□□□ -0.04
SYNE2-222ENST00000556725 NEO1Q92859 1461 aa14.8□□□□□ -0.04
SYNE2-222ENST00000556725 LMTK3Q96Q04 1460 aa14.8□□□□□ -0.04
SYNE2-222ENST00000556725 PCF11O94913 1555 aaKnown RBP14.79□□□□□ -0.04
SYNE2-222ENST00000556725 HSPA2P54652 639 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms