RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 PCF11O94913 1555 aaKnown RBP15.35■□□□□ 0.05
TMEM260-211ENST00000556648 FHOD3Q2V2M9 1422 aa15.33■□□□□ 0.05
TMEM260-211ENST00000556648 TIAM1Q13009 1591 aa15.33■□□□□ 0.04
TMEM260-211ENST00000556648 MRC2Q9UBG0 1479 aa15.33■□□□□ 0.04
TMEM260-211ENST00000556648 PBRM1Q86U86 1689 aa15.3■□□□□ 0.04
TMEM260-211ENST00000556648 EFCAB5A4FU69 1503 aa15.29■□□□□ 0.04
TMEM260-211ENST00000556648 CFAP43Q8NDM7 1665 aa15.28■□□□□ 0.04
TMEM260-211ENST00000556648 RRBP1Q9P2E9 1410 aaKnown RBP15.28■□□□□ 0.04
TMEM260-211ENST00000556648 MAP3K1Q13233 1512 aa15.27■□□□□ 0.04
TMEM260-211ENST00000556648 FHAD1B1AJZ9 1412 aa15.26■□□□□ 0.03
TMEM260-211ENST00000556648 AQRO60306 1485 aaKnown RBP eCLIP15.26■□□□□ 0.03
TMEM260-211ENST00000556648 LRRC9Q6ZRR7 1453 aa15.24■□□□□ 0.03
TMEM260-211ENST00000556648 WDR62O43379 1518 aa15.24■□□□□ 0.03
TMEM260-211ENST00000556648 SAMD9Q5K651 1589 aa15.23■□□□□ 0.03
TMEM260-211ENST00000556648 ADAMTS12P58397 1594 aa15.23■□□□□ 0.03
TMEM260-211ENST00000556648 ZNF608Q9ULD9 1512 aaPredicted RBP15.22■□□□□ 0.03
TMEM260-211ENST00000556648 FYCO1Q9BQS8 1478 aa15.22■□□□□ 0.03
TMEM260-211ENST00000556648 CCNB3Q8WWL7 1395 aa15.21■□□□□ 0.03
TMEM260-211ENST00000556648 ATP1B4Q9UN42 357 aaPredicted RBP15.21■□□□□ 0.02
TMEM260-211ENST00000556648 CASKIN1Q8WXD9 1431 aa15.2■□□□□ 0.02
TMEM260-211ENST00000556648 SNAPC4Q5SXM2 1469 aa15.19■□□□□ 0.02
TMEM260-211ENST00000556648 PHLDB1Q86UU1 1377 aa15.19■□□□□ 0.02
TMEM260-211ENST00000556648 LRRIQ1Q96JM4 1722 aa15.18■□□□□ 0.02
TMEM260-211ENST00000556648 IFT140Q96RY7 1462 aa15.17■□□□□ 0.02
TMEM260-211ENST00000556648 GRIN2BQ13224 1484 aa15.16■□□□□ 0.02
TMEM260-211ENST00000556648 THOC2Q8NI27 1593 aaKnown RBP15.15■□□□□ 0.02
TMEM260-211ENST00000556648 FMN1Q68DA7 1419 aa15.15■□□□□ 0.02
TMEM260-211ENST00000556648 ERCC6Q03468 1493 aa15.15■□□□□ 0.02
TMEM260-211ENST00000556648 ITGAEP38570 1179 aa15.14■□□□□ 0.01
TMEM260-211ENST00000556648 EIF4G3O43432 1585 aaKnown RBP15.13■□□□□ 0.01
TMEM260-211ENST00000556648 DHX57Q6P158 1386 aaKnown RBP15.13■□□□□ 0.01
TMEM260-211ENST00000556648 IQGAP2Q13576 1575 aa15.12■□□□□ 0.01
TMEM260-211ENST00000556648 FAM50AQ14320 339 aaKnown RBP15.05■□□□□ 0
TMEM260-211ENST00000556648 MAGI3Q5TCQ9 1506 aa15.03■□□□□ -0
TMEM260-211ENST00000556648 RAB3GAP2Q9H2M9 1393 aa15.03■□□□□ -0
TMEM260-211ENST00000556648 UGGT2Q9NYU1 1516 aa15.02■□□□□ -0
TMEM260-211ENST00000556648 MTUS2Q5JR59 1369 aa15.02□□□□□ -0.01
TMEM260-211ENST00000556648 GRIN2AQ12879 1464 aa15.02□□□□□ -0.01
TMEM260-211ENST00000556648 HECW1Q76N89 1606 aa15□□□□□ -0.01
TMEM260-211ENST00000556648 FGD6Q6ZV73 1430 aa15□□□□□ -0.01
TMEM260-211ENST00000556648 EHBP1L1Q8N3D4 1523 aa14.99□□□□□ -0.01
TMEM260-211ENST00000556648 ZNF316A6NFI3 1004 aaPredicted RBP14.99□□□□□ -0.01
TMEM260-211ENST00000556648 NCOA2Q15596 1464 aa14.99□□□□□ -0.01
TMEM260-211ENST00000556648 DIEXFQ68CQ4 756 aaKnown RBP14.99□□□□□ -0.01
TMEM260-211ENST00000556648 KIAA0556O60303 1618 aa14.98□□□□□ -0.01
TMEM260-211ENST00000556648 SUPT6HQ7KZ85 1726 aaKnown RBP14.98□□□□□ -0.01
TMEM260-211ENST00000556648 SETD5Q9C0A6 1442 aa14.98□□□□□ -0.01
TMEM260-211ENST00000556648 CLSPNQ9HAW4 1339 aa14.98□□□□□ -0.01
TMEM260-211ENST00000556648 CDK13Q14004 1512 aaKnown RBP14.98□□□□□ -0.01
TMEM260-211ENST00000556648 DISP1Q96F81 1524 aa14.98□□□□□ -0.01
TMEM260-211ENST00000556648 KIAA0586Q9BVV6 1533 aa14.98□□□□□ -0.01
TMEM260-211ENST00000556648 CEP170Q5SW79 1584 aa14.97□□□□□ -0.01
TMEM260-211ENST00000556648 MAPKBP1O60336 1514 aa14.97□□□□□ -0.01
TMEM260-211ENST00000556648 MAGI1Q96QZ7 1491 aaPredicted RBP14.96□□□□□ -0.01
TMEM260-211ENST00000556648 CCDC18Q5T9S5 1454 aa14.96□□□□□ -0.02
TMEM260-211ENST00000556648 EPRSP07814 1512 aaKnown RBP14.96□□□□□ -0.02
TMEM260-211ENST00000556648 ARID3CA6NKF2 412 aa14.95□□□□□ -0.02
TMEM260-211ENST00000556648 ARHGEF11O15085 1522 aa14.94□□□□□ -0.02
TMEM260-211ENST00000556648 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.93□□□□□ -0.02
TMEM260-211ENST00000556648 MYOM3Q5VTT5 1437 aa14.93□□□□□ -0.02
TMEM260-211ENST00000556648 SYNJ2O15056 1496 aa14.93□□□□□ -0.02
TMEM260-211ENST00000556648 PTPRKQ15262 1439 aa14.92□□□□□ -0.02
TMEM260-211ENST00000556648 PTPN23Q9H3S7 1636 aa14.9□□□□□ -0.02
TMEM260-211ENST00000556648 CHMP7Q8WUX9 453 aaPredicted RBP14.9□□□□□ -0.02
TMEM260-211ENST00000556648 FBLN2P98095 1184 aa14.88□□□□□ -0.03
TMEM260-211ENST00000556648 RAPGEF6Q8TEU7 1601 aa14.88□□□□□ -0.03
TMEM260-211ENST00000556648 NUP153P49790 1475 aaKnown RBP14.87□□□□□ -0.03
TMEM260-211ENST00000556648 NUP160Q12769 1436 aa14.86□□□□□ -0.03
TMEM260-211ENST00000556648 TCOF1Q13428 1488 aaKnown RBP14.84□□□□□ -0.03
TMEM260-211ENST00000556648 HFM1A2PYH4 1435 aa14.82□□□□□ -0.04
TMEM260-211ENST00000556648 PLB1Q6P1J6 1458 aa14.81□□□□□ -0.04
TMEM260-211ENST00000556648 SIN3AQ96ST3 1273 aa14.8□□□□□ -0.04
TMEM260-211ENST00000556648 NAIPQ13075 1403 aa14.8□□□□□ -0.04
TMEM260-211ENST00000556648 JPH4Q96JJ6 628 aa14.77□□□□□ -0.04
TMEM260-211ENST00000556648 GCC2Q8IWJ2 1684 aa14.76□□□□□ -0.05
TMEM260-211ENST00000556648 NEUROD1Q13562 356 aa14.76□□□□□ -0.05
TMEM260-211ENST00000556648 KDM6BO15054 1643 aa14.76□□□□□ -0.05
TMEM260-211ENST00000556648 MIA2Q96PC5 1412 aa14.75□□□□□ -0.05
TMEM260-211ENST00000556648 CHD1O14646 1710 aa14.75□□□□□ -0.05
TMEM260-211ENST00000556648 CHIC2Q9UKJ5 165 aa14.75□□□□□ -0.05
TMEM260-211ENST00000556648 PRG4Q92954 1404 aaPredicted RBP14.75□□□□□ -0.05
TMEM260-211ENST00000556648 MIER1Q8N108 512 aa14.75□□□□□ -0.05
TMEM260-211ENST00000556648 CARMIL2Q6F5E8 1435 aa14.74□□□□□ -0.05
TMEM260-211ENST00000556648 RRP7BPQ9NSQ0 103 aa14.74□□□□□ -0.05
TMEM260-211ENST00000556648 KIF14Q15058 1648 aa14.74□□□□□ -0.05
TMEM260-211ENST00000556648 UACAQ9BZF9 1416 aa14.73□□□□□ -0.05
TMEM260-211ENST00000556648 ABCA8O94911 1581 aa14.72□□□□□ -0.05
TMEM260-211ENST00000556648 TROQ12816 1431 aaPredicted RBP14.71□□□□□ -0.05
TMEM260-211ENST00000556648 ZNF644Q9H582 1327 aaPredicted RBP14.71□□□□□ -0.05
TMEM260-211ENST00000556648 ADCY10Q96PN6 1610 aa14.7□□□□□ -0.06
TMEM260-211ENST00000556648 DNMT1P26358 1616 aaKnown RBP14.69□□□□□ -0.06
TMEM260-211ENST00000556648 DAPK1P53355 1430 aa14.69□□□□□ -0.06
TMEM260-211ENST00000556648 AKNAQ7Z591 1439 aa14.68□□□□□ -0.06
TMEM260-211ENST00000556648 ABCC5O15440 1437 aa14.67□□□□□ -0.06
TMEM260-211ENST00000556648 SCAF1Q9H7N4 1312 aaKnown RBP14.67□□□□□ -0.06
TMEM260-211ENST00000556648 DENND4BO75064 1496 aaPredicted RBP14.67□□□□□ -0.06
TMEM260-211ENST00000556648 CDK11AQ9UQ88 783 aaPredicted RBP14.66□□□□□ -0.06
TMEM260-211ENST00000556648 ITSN2Q9NZM3 1697 aa14.66□□□□□ -0.06
TMEM260-211ENST00000556648 ATP10BO94823 1461 aa14.65□□□□□ -0.06
TMEM260-211ENST00000556648 CAMSAP2Q08AD1 1489 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms