RNA–Protein interactions for RNA: ENST00000555038.5

ARHGEF40-204, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-204ENST00000555038 GAPVD1Q14C86 1478 aa31.88■■■□□ 2.69
ARHGEF40-204ENST00000555038 TARBP1Q13395 1621 aaKnown RBP31.84■■■□□ 2.69
ARHGEF40-204ENST00000555038 AQRO60306 1485 aaKnown RBP eCLIP31.82■■■□□ 2.68
ARHGEF40-204ENST00000555038 CFAP43Q8NDM7 1665 aa31.82■■■□□ 2.68
ARHGEF40-204ENST00000555038 FYCO1Q9BQS8 1478 aa31.78■■■□□ 2.68
ARHGEF40-204ENST00000555038 TDRD9Q8NDG6 1382 aaKnown RBP31.78■■■□□ 2.68
ARHGEF40-204ENST00000555038 CCNB3Q8WWL7 1395 aa31.78■■■□□ 2.68
ARHGEF40-204ENST00000555038 LRRC9Q6ZRR7 1453 aa31.77■■■□□ 2.68
ARHGEF40-204ENST00000555038 PCF11O94913 1555 aaKnown RBP31.77■■■□□ 2.68
ARHGEF40-204ENST00000555038 MRC2Q9UBG0 1479 aa31.76■■■□□ 2.67
ARHGEF40-204ENST00000555038 CLSPNQ9HAW4 1339 aa31.75■■■□□ 2.67
ARHGEF40-204ENST00000555038 CASKIN1Q8WXD9 1431 aa31.72■■■□□ 2.67
ARHGEF40-204ENST00000555038 FMN1Q68DA7 1419 aa31.7■■■□□ 2.66
ARHGEF40-204ENST00000555038 FHOD3Q2V2M9 1422 aa31.69■■■□□ 2.66
ARHGEF40-204ENST00000555038 SAMD9Q5K651 1589 aa31.68■■■□□ 2.66
ARHGEF40-204ENST00000555038 PBRM1Q86U86 1689 aa31.63■■■□□ 2.65
ARHGEF40-204ENST00000555038 WDR62O43379 1518 aa31.57■■■□□ 2.64
ARHGEF40-204ENST00000555038 DHX57Q6P158 1386 aaKnown RBP31.56■■■□□ 2.64
ARHGEF40-204ENST00000555038 P3H3Q8IVL6 736 aa31.56■■■□□ 2.64
ARHGEF40-204ENST00000555038 SNAPC4Q5SXM2 1469 aa31.55■■■□□ 2.64
ARHGEF40-204ENST00000555038 IFT140Q96RY7 1462 aa31.54■■■□□ 2.64
ARHGEF40-204ENST00000555038 THOC2Q8NI27 1593 aaKnown RBP31.53■■■□□ 2.64
ARHGEF40-204ENST00000555038 ADAMTS12P58397 1594 aa31.53■■■□□ 2.64
ARHGEF40-204ENST00000555038 GRIN2BQ13224 1484 aa31.51■■■□□ 2.63
ARHGEF40-204ENST00000555038 PHLDB1Q86UU1 1377 aa31.5■■■□□ 2.63
ARHGEF40-204ENST00000555038 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.48■■■□□ 2.635e-7■□□□□ 10.3
ARHGEF40-204ENST00000555038 ZNF316A6NFI3 1004 aaPredicted RBP31.48■■■□□ 2.63
ARHGEF40-204ENST00000555038 DIEXFQ68CQ4 756 aaKnown RBP31.43■■■□□ 2.62
ARHGEF40-204ENST00000555038 IQGAP2Q13576 1575 aa31.39■■■□□ 2.62
ARHGEF40-204ENST00000555038 ATP1B4Q9UN42 357 aaPredicted RBP31.38■■■□□ 2.61
ARHGEF40-204ENST00000555038 SETD5Q9C0A6 1442 aa31.32■■■□□ 2.6
ARHGEF40-204ENST00000555038 CCDC18Q5T9S5 1454 aa31.31■■■□□ 2.6
ARHGEF40-204ENST00000555038 RAB3GAP2Q9H2M9 1393 aa31.31■■■□□ 2.6
ARHGEF40-204ENST00000555038 LRRIQ1Q96JM4 1722 aa31.29■■■□□ 2.6
ARHGEF40-204ENST00000555038 MTUS2Q5JR59 1369 aa31.29■■■□□ 2.6
ARHGEF40-204ENST00000555038 EHBP1L1Q8N3D4 1523 aa31.28■■■□□ 2.6
ARHGEF40-204ENST00000555038 UGGT2Q9NYU1 1516 aa31.28■■■□□ 2.6
ARHGEF40-204ENST00000555038 ERCC6Q03468 1493 aa31.27■■■□□ 2.6
ARHGEF40-204ENST00000555038 ZNF608Q9ULD9 1512 aaPredicted RBP31.26■■■□□ 2.6
ARHGEF40-204ENST00000555038 ITGAEP38570 1179 aa31.25■■■□□ 2.59
ARHGEF40-204ENST00000555038 FGD6Q6ZV73 1430 aa31.25■■■□□ 2.59
ARHGEF40-204ENST00000555038 HECW1Q76N89 1606 aa31.25■■■□□ 2.59
ARHGEF40-204ENST00000555038 FAM50AQ14320 339 aaKnown RBP31.22■■■□□ 2.59
ARHGEF40-204ENST00000555038 SUPT6HQ7KZ85 1726 aaKnown RBP31.22■■■□□ 2.59
ARHGEF40-204ENST00000555038 EIF4G3O43432 1585 aaKnown RBP31.21■■■□□ 2.59
ARHGEF40-204ENST00000555038 KIAA0586Q9BVV6 1533 aa31.19■■■□□ 2.58
ARHGEF40-204ENST00000555038 NCOA2Q15596 1464 aa31.16■■■□□ 2.58
ARHGEF40-204ENST00000555038 MAGI1Q96QZ7 1491 aaPredicted RBP31.14■■■□□ 2.58
ARHGEF40-204ENST00000555038 ARHGEF11O15085 1522 aa31.14■■■□□ 2.58
ARHGEF40-204ENST00000555038 MYOM3Q5VTT5 1437 aa31.14■■■□□ 2.58
ARHGEF40-204ENST00000555038 GRIN2AQ12879 1464 aa31.13■■■□□ 2.57
ARHGEF40-204ENST00000555038 MAPKBP1O60336 1514 aa31.12■■■□□ 2.57
ARHGEF40-204ENST00000555038 EPRSP07814 1512 aaKnown RBP31.07■■■□□ 2.56
ARHGEF40-204ENST00000555038 KIAA0556O60303 1618 aa31.07■■■□□ 2.56
ARHGEF40-204ENST00000555038 MAGI3Q5TCQ9 1506 aa31.03■■■□□ 2.56
ARHGEF40-204ENST00000555038 DISP1Q96F81 1524 aa31.01■■■□□ 2.56
ARHGEF40-204ENST00000555038 SYNJ2O15056 1496 aa31.01■■■□□ 2.55
ARHGEF40-204ENST00000555038 HFM1A2PYH4 1435 aa30.99■■■□□ 2.55
ARHGEF40-204ENST00000555038 PTPN23Q9H3S7 1636 aa30.99■■■□□ 2.55
ARHGEF40-204ENST00000555038 TCOF1Q13428 1488 aaKnown RBP30.98■■■□□ 2.55
ARHGEF40-204ENST00000555038 TIMELESSQ9UNS1 1208 aa30.94■■■□□ 2.54
ARHGEF40-204ENST00000555038 MIA2Q96PC5 1412 aa30.93■■■□□ 2.54
ARHGEF40-204ENST00000555038 CDK13Q14004 1512 aaKnown RBP30.89■■■□□ 2.54
ARHGEF40-204ENST00000555038 PTPRKQ15262 1439 aa30.89■■■□□ 2.54
ARHGEF40-204ENST00000555038 RAPGEF6Q8TEU7 1601 aa30.89■■■□□ 2.53
ARHGEF40-204ENST00000555038 CEP170Q5SW79 1584 aa30.88■■■□□ 2.53
ARHGEF40-204ENST00000555038 CENPBP07199 599 aaPredicted RBP30.87■■■□□ 2.53
ARHGEF40-204ENST00000555038 NUP160Q12769 1436 aa30.86■■■□□ 2.53
ARHGEF40-204ENST00000555038 AKNAQ7Z591 1439 aa30.86■■■□□ 2.53
ARHGEF40-204ENST00000555038 CHMP7Q8WUX9 453 aaPredicted RBP30.85■■■□□ 2.53
ARHGEF40-204ENST00000555038 UACAQ9BZF9 1416 aa30.84■■■□□ 2.53
ARHGEF40-204ENST00000555038 NAIPQ13075 1403 aa30.84■■■□□ 2.53
ARHGEF40-204ENST00000555038 NUP153P49790 1475 aaKnown RBP30.82■■■□□ 2.52
ARHGEF40-204ENST00000555038 ACIN1Q9UKV3 1341 aaKnown RBP30.81■■■□□ 2.52
ARHGEF40-204ENST00000555038 CARMIL2Q6F5E8 1435 aa30.77■■■□□ 2.52
ARHGEF40-204ENST00000555038 GCC2Q8IWJ2 1684 aa30.77■■■□□ 2.52
ARHGEF40-204ENST00000555038 CDK11AQ9UQ88 783 aaPredicted RBP30.75■■■□□ 2.51
ARHGEF40-204ENST00000555038 MIER1Q8N108 512 aa30.73■■■□□ 2.51
ARHGEF40-204ENST00000555038 SCAF1Q9H7N4 1312 aaKnown RBP30.67■■■□□ 2.5
ARHGEF40-204ENST00000555038 SIN3AQ96ST3 1273 aa30.66■■■□□ 2.5
ARHGEF40-204ENST00000555038 TROQ12816 1431 aaPredicted RBP30.64■■■□□ 2.5
ARHGEF40-204ENST00000555038 NEUROD1Q13562 356 aa30.64■■■□□ 2.5
ARHGEF40-204ENST00000555038 JPH4Q96JJ6 628 aa30.64■■■□□ 2.49
ARHGEF40-204ENST00000555038 ADCY10Q96PN6 1610 aa30.62■■■□□ 2.49
ARHGEF40-204ENST00000555038 ROCK1Q13464 1354 aa30.61■■■□□ 2.49
ARHGEF40-204ENST00000555038 FBLN2P98095 1184 aa30.6■■■□□ 2.49
ARHGEF40-204ENST00000555038 DNMT1P26358 1616 aaKnown RBP30.6■■■□□ 2.49
ARHGEF40-204ENST00000555038 ITSN2Q9NZM3 1697 aa30.58■■■□□ 2.49
ARHGEF40-204ENST00000555038 PLB1Q6P1J6 1458 aa30.57■■■□□ 2.48
ARHGEF40-204ENST00000555038 PPP1R15AO75807 674 aaPredicted RBP30.56■■■□□ 2.48
ARHGEF40-204ENST00000555038 DAPK1P53355 1430 aa30.55■■■□□ 2.48
ARHGEF40-204ENST00000555038 ABCA8O94911 1581 aa30.55■■■□□ 2.48
ARHGEF40-204ENST00000555038 ARID3CA6NKF2 412 aa30.54■■■□□ 2.48
ARHGEF40-204ENST00000555038 TONSLQ96HA7 1378 aa30.53■■■□□ 2.48
ARHGEF40-204ENST00000555038 RRP7BPQ9NSQ0 103 aa30.49■■■□□ 2.47
ARHGEF40-204ENST00000555038 PRG4Q92954 1404 aaPredicted RBP30.49■■■□□ 2.47
ARHGEF40-204ENST00000555038 ABCC5O15440 1437 aa30.48■■■□□ 2.47
ARHGEF40-204ENST00000555038 CHIC2Q9UKJ5 165 aa30.46■■■□□ 2.47
ARHGEF40-204ENST00000555038 GPATCH8Q9UKJ3 1502 aaKnown RBP30.43■■■□□ 2.46
ARHGEF40-204ENST00000555038 KDM6BO15054 1643 aa30.42■■■□□ 2.46
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms