RNA–Protein interactions for RNA: ENST00000555022.5

SYNE2-217, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,396 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-217ENST00000555022 POLR3GLQ9BT43 218 aa12.43□□□□□ -0.42
SYNE2-217ENST00000555022 SMARCA2P51531 1590 aa12.43□□□□□ -0.42
SYNE2-217ENST00000555022 EEA1Q15075 1411 aa12.41□□□□□ -0.42
SYNE2-217ENST00000555022 KIF21BO75037 1637 aa12.4□□□□□ -0.42
SYNE2-217ENST00000555022 PAK3O75914 559 aaPredicted RBP12.39□□□□□ -0.43
SYNE2-217ENST00000555022 NPM2Q86SE8 214 aaKnown RBP12.39□□□□□ -0.43
SYNE2-217ENST00000555022 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.39□□□□□ -0.43
SYNE2-217ENST00000555022 TOP2AP11388 1531 aaKnown RBP12.39□□□□□ -0.43
SYNE2-217ENST00000555022 CCNB3Q8WWL7 1395 aa12.38□□□□□ -0.43
SYNE2-217ENST00000555022 PPP1R15AO75807 674 aaPredicted RBP12.38□□□□□ -0.43
SYNE2-217ENST00000555022 CCDC184Q52MB2 194 aa12.38□□□□□ -0.43
SYNE2-217ENST00000555022 WDR97A6NE52 1622 aa12.38□□□□□ -0.43
SYNE2-217ENST00000555022 SYNJ1O43426 1573 aa12.37□□□□□ -0.43
SYNE2-217ENST00000555022 SALL2Q9Y467 1007 aaPredicted RBP12.33□□□□□ -0.44
SYNE2-217ENST00000555022 ARAP1Q96P48 1450 aa12.31□□□□□ -0.44
SYNE2-217ENST00000555022 IL27Q8NEV9 243 aa12.3□□□□□ -0.44
SYNE2-217ENST00000555022 ARID3CA6NKF2 412 aa12.29□□□□□ -0.44
SYNE2-217ENST00000555022 LAS1LQ9Y4W2 734 aaKnown RBP12.29□□□□□ -0.44
SYNE2-217ENST00000555022 TONSLQ96HA7 1378 aa12.28□□□□□ -0.44
SYNE2-217ENST00000555022 SMARCA4P51532 1647 aa12.28□□□□□ -0.44
SYNE2-217ENST00000555022 NOP58Q9Y2X3 529 aaKnown RBP12.27□□□□□ -0.44
SYNE2-217ENST00000555022 CHIC2Q9UKJ5 165 aa12.27□□□□□ -0.45
SYNE2-217ENST00000555022 RTL5Q5HYW3 569 aaPredicted RBP12.26□□□□□ -0.45
SYNE2-217ENST00000555022 FANCIQ9NVI1 1328 aa12.26□□□□□ -0.45
SYNE2-217ENST00000555022 MRS2Q9HD23 443 aa12.26□□□□□ -0.45
SYNE2-217ENST00000555022 MAPKBP1O60336 1514 aa12.25□□□□□ -0.45
SYNE2-217ENST00000555022 FOXD1Q16676 465 aa12.25□□□□□ -0.45
SYNE2-217ENST00000555022 CCER2I3L3R5 266 aa12.24□□□□□ -0.45
SYNE2-217ENST00000555022 SETD5Q9C0A6 1442 aa12.24□□□□□ -0.45
SYNE2-217ENST00000555022 PPP4R2Q9NY27 417 aa12.23□□□□□ -0.45
SYNE2-217ENST00000555022 ZNF326Q5BKZ1 582 aaKnown RBP12.22□□□□□ -0.45
SYNE2-217ENST00000555022 PHLDB1Q86UU1 1377 aa12.22□□□□□ -0.45
SYNE2-217ENST00000555022 RRP7BPQ9NSQ0 103 aa12.21□□□□□ -0.46
SYNE2-217ENST00000555022 HSPA5P11021 654 aaKnown RBP12.2□□□□□ -0.46
SYNE2-217ENST00000555022 RRBP1Q9P2E9 1410 aaKnown RBP12.19□□□□□ -0.46
SYNE2-217ENST00000555022 SKAP1Q86WV1 359 aa12.18□□□□□ -0.46
SYNE2-217ENST00000555022 EIF5BO60841 1220 aaKnown RBP12.18□□□□□ -0.46
SYNE2-217ENST00000555022 ANP32AP39687 249 aaKnown RBP12.17□□□□□ -0.46
SYNE2-217ENST00000555022 ZBTB47Q9UFB7 747 aaPredicted RBP12.16□□□□□ -0.46
SYNE2-217ENST00000555022 WASHC2AQ641Q2 1341 aa12.15□□□□□ -0.46
SYNE2-217ENST00000555022 C11orf95C9JLR9 678 aaPredicted RBP12.14□□□□□ -0.47
SYNE2-217ENST00000555022 UNC13AQ9UPW8 1703 aa12.13□□□□□ -0.47
SYNE2-217ENST00000555022 AKNAQ7Z591 1439 aa12.13□□□□□ -0.47
SYNE2-217ENST00000555022 ARHGAP35Q9NRY4 1499 aa12.12□□□□□ -0.47
SYNE2-217ENST00000555022 NEFMP07197 916 aa12.1□□□□□ -0.47
SYNE2-217ENST00000555022 SLC4A3P48751 1232 aa12.1□□□□□ -0.47
SYNE2-217ENST00000555022 ARXQ96QS3 562 aa12.07□□□□□ -0.48
SYNE2-217ENST00000555022 BRPF3Q9ULD4 1205 aa12.07□□□□□ -0.48
SYNE2-217ENST00000555022 EIF4G2P78344 907 aaKnown RBP eCLIP12.06□□□□□ -0.48
SYNE2-217ENST00000555022 IPO9Q96P70 1041 aaKnown RBP12.05□□□□□ -0.48
SYNE2-217ENST00000555022 CUX2O14529 1486 aa12.05□□□□□ -0.48
SYNE2-217ENST00000555022 BICRAQ9NZM4 1560 aa12.05□□□□□ -0.48
SYNE2-217ENST00000555022 FHOD3Q2V2M9 1422 aa12.05□□□□□ -0.48
SYNE2-217ENST00000555022 PRKRIP1Q9H875 184 aaPredicted RBP12.04□□□□□ -0.48
SYNE2-217ENST00000555022 PRXQ9BXM0 1461 aa12.04□□□□□ -0.48
SYNE2-217ENST00000555022 KIF27Q86VH2 1401 aa12.04□□□□□ -0.48
SYNE2-217ENST00000555022 L3MBTL2Q969R5 705 aa12.02□□□□□ -0.48
SYNE2-217ENST00000555022 EXOC6Q8TAG9 804 aa12□□□□□ -0.49
SYNE2-217ENST00000555022 AQRO60306 1485 aaKnown RBP eCLIP12□□□□□ -0.49
SYNE2-217ENST00000555022 PLIN1O60240 522 aa11.99□□□□□ -0.49
SYNE2-217ENST00000555022 LRRC9Q6ZRR7 1453 aa11.99□□□□□ -0.49
SYNE2-217ENST00000555022 MYT1LQ9UL68 1186 aa11.98□□□□□ -0.49
SYNE2-217ENST00000555022 MTUS2Q5JR59 1369 aa11.98□□□□□ -0.49
SYNE2-217ENST00000555022 CCDC18Q5T9S5 1454 aa11.97□□□□□ -0.49
SYNE2-217ENST00000555022 TIMELESSQ9UNS1 1208 aa11.97□□□□□ -0.49
SYNE2-217ENST00000555022 ATAD2BQ9ULI0 1458 aa11.97□□□□□ -0.49
SYNE2-217ENST00000555022 NBPF8Q3BBV2 869 aa11.96□□□□□ -0.49
SYNE2-217ENST00000555022 ZBED9Q6R2W3 1325 aa11.96□□□□□ -0.5
SYNE2-217ENST00000555022 PTPRKQ15262 1439 aa11.96□□□□□ -0.5
SYNE2-217ENST00000555022 TMC1Q8TDI8 760 aa11.95□□□□□ -0.5
SYNE2-217ENST00000555022 CARMIL1Q5VZK9 1371 aa11.95□□□□□ -0.5
SYNE2-217ENST00000555022 TIAM1Q13009 1591 aa11.94□□□□□ -0.5
SYNE2-217ENST00000555022 KIF7Q2M1P5 1343 aa11.93□□□□□ -0.5
SYNE2-217ENST00000555022 NUDCQ9Y266 331 aa11.93□□□□□ -0.5
SYNE2-217ENST00000555022 KDM2AQ9Y2K7 1162 aa11.93□□□□□ -0.5
SYNE2-217ENST00000555022 CUX1P39880 1505 aa11.93□□□□□ -0.5
SYNE2-217ENST00000555022 TOP2BQ02880 1626 aa11.92□□□□□ -0.5
SYNE2-217ENST00000555022 PDE4AP27815 886 aa11.92□□□□□ -0.5
SYNE2-217ENST00000555022 IGF1RP08069 1367 aa11.91□□□□□ -0.5
SYNE2-217ENST00000555022 CNTLNQ9NXG0 1405 aa11.91□□□□□ -0.5
SYNE2-217ENST00000555022 CCDC7Q96M83 1385 aa11.91□□□□□ -0.5
SYNE2-217ENST00000555022 DAXXQ9UER7 740 aaPredicted RBP11.9□□□□□ -0.5
SYNE2-217ENST00000555022 ERICH3Q5RHP9 1530 aa11.9□□□□□ -0.5
SYNE2-217ENST00000555022 CDCA7LQ96GN5 454 aa11.88□□□□□ -0.51
SYNE2-217ENST00000555022 MPHOSPH9Q99550 1183 aa11.88□□□□□ -0.51
SYNE2-217ENST00000555022 CC2D2AQ9P2K1 1620 aa11.87□□□□□ -0.51
SYNE2-217ENST00000555022 RGS3P49796 1198 aa11.87□□□□□ -0.51
SYNE2-217ENST00000555022 ERICH6BQ5W0A0 696 aa11.87□□□□□ -0.51
SYNE2-217ENST00000555022 SLC4A1APQ9BWU0 796 aaKnown RBP11.87□□□□□ -0.51
SYNE2-217ENST00000555022 PCF11O94913 1555 aaKnown RBP11.87□□□□□ -0.51
SYNE2-217ENST00000555022 FRAT1Q92837 279 aaPredicted RBP11.86□□□□□ -0.51
SYNE2-217ENST00000555022 FGD6Q6ZV73 1430 aa11.86□□□□□ -0.51
SYNE2-217ENST00000555022 ZNF777Q9ULD5 760 aaPredicted RBP11.85□□□□□ -0.51
SYNE2-217ENST00000555022 FHAD1B1AJZ9 1412 aa11.85□□□□□ -0.51
SYNE2-217ENST00000555022 UACAQ9BZF9 1416 aa11.84□□□□□ -0.51
SYNE2-217ENST00000555022 ARID4BQ4LE39 1312 aaPredicted RBP11.83□□□□□ -0.52
SYNE2-217ENST00000555022 RRP1P56182 461 aaKnown RBP11.82□□□□□ -0.52
SYNE2-217ENST00000555022 NAIPQ13075 1403 aa11.82□□□□□ -0.52
SYNE2-217ENST00000555022 RCAN3Q9UKA8 241 aa11.82□□□□□ -0.52
SYNE2-217ENST00000555022 NFKBIBQ15653 356 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms