RNA–Protein interactions for RNA: ENST00000554308.5

PPP4R3A-201, Transcript of protein phosphatase 4 regulatory subunit 3A, humanhuman

TSL 5

Gene PPP4R3A, Length 2,515 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R3A-201ENST00000554308 ABCA5Q8WWZ7 1642 aa22.17■■□□□ 1.14
PPP4R3A-201ENST00000554308 CUL7Q14999 1698 aa22.15■■□□□ 1.14
PPP4R3A-201ENST00000554308 ATP1B4Q9UN42 357 aaPredicted RBP22.13■■□□□ 1.13
PPP4R3A-201ENST00000554308 HNRNPUL2Q1KMD3 747 aaKnown RBP22.12■■□□□ 1.13
PPP4R3A-201ENST00000554308 NEUROD1Q13562 356 aa22.09■■□□□ 1.13
PPP4R3A-201ENST00000554308 ZNF608Q9ULD9 1512 aaPredicted RBP22.08■■□□□ 1.13
PPP4R3A-201ENST00000554308 WDR62O43379 1518 aa22.07■■□□□ 1.12
PPP4R3A-201ENST00000554308 ACIN1Q9UKV3 1341 aaKnown RBP22.06■■□□□ 1.12
PPP4R3A-201ENST00000554308 FHOD3Q2V2M9 1422 aa22.05■■□□□ 1.12
PPP4R3A-201ENST00000554308 IFT140Q96RY7 1462 aa22.04■■□□□ 1.12
PPP4R3A-201ENST00000554308 GRIN2BQ13224 1484 aa21.99■■□□□ 1.11
PPP4R3A-201ENST00000554308 FHAD1B1AJZ9 1412 aa21.98■■□□□ 1.11
PPP4R3A-201ENST00000554308 DIEXFQ68CQ4 756 aaKnown RBP21.98■■□□□ 1.11
PPP4R3A-201ENST00000554308 CTTNBP2Q8WZ74 1663 aa21.97■■□□□ 1.11
PPP4R3A-201ENST00000554308 PBRM1Q86U86 1689 aa21.95■■□□□ 1.11
PPP4R3A-201ENST00000554308 THOC2Q8NI27 1593 aaKnown RBP21.92■■□□□ 1.1
PPP4R3A-201ENST00000554308 EFCAB5A4FU69 1503 aa21.91■■□□□ 1.1
PPP4R3A-201ENST00000554308 FBLN2P98095 1184 aa21.9■■□□□ 1.1
PPP4R3A-201ENST00000554308 GTF3C3Q9Y5Q9 886 aa21.89■■□□□ 1.09
PPP4R3A-201ENST00000554308 ADAMTS12P58397 1594 aa21.88■■□□□ 1.09
PPP4R3A-201ENST00000554308 PCF11O94913 1555 aaKnown RBP21.87■■□□□ 1.09
PPP4R3A-201ENST00000554308 SNAPC4Q5SXM2 1469 aa21.87■■□□□ 1.09
PPP4R3A-201ENST00000554308 TIAM1Q13009 1591 aa21.86■■□□□ 1.09
PPP4R3A-201ENST00000554308 ITGAEP38570 1179 aa21.86■■□□□ 1.09
PPP4R3A-201ENST00000554308 EIF4G3O43432 1585 aaKnown RBP21.85■■□□□ 1.09
PPP4R3A-201ENST00000554308 FMN1Q68DA7 1419 aa21.85■■□□□ 1.09
PPP4R3A-201ENST00000554308 CHMP7Q8WUX9 453 aaPredicted RBP21.84■■□□□ 1.09
PPP4R3A-201ENST00000554308 LRRC9Q6ZRR7 1453 aa21.82■■□□□ 1.08
PPP4R3A-201ENST00000554308 CASKIN1Q8WXD9 1431 aa21.82■■□□□ 1.08
PPP4R3A-201ENST00000554308 FYCO1Q9BQS8 1478 aa21.8■■□□□ 1.08
PPP4R3A-201ENST00000554308 MAP3K1Q13233 1512 aa21.8■■□□□ 1.08
PPP4R3A-201ENST00000554308 CCNB3Q8WWL7 1395 aa21.79■■□□□ 1.08
PPP4R3A-201ENST00000554308 SAMD9Q5K651 1589 aa21.78■■□□□ 1.08
PPP4R3A-201ENST00000554308 CENPBP07199 599 aaPredicted RBP21.78■■□□□ 1.08
PPP4R3A-201ENST00000554308 RRBP1Q9P2E9 1410 aaKnown RBP21.77■■□□□ 1.08
PPP4R3A-201ENST00000554308 IQGAP2Q13576 1575 aa21.77■■□□□ 1.08
PPP4R3A-201ENST00000554308 GRIN2AQ12879 1464 aa21.75■■□□□ 1.07
PPP4R3A-201ENST00000554308 PHLDB1Q86UU1 1377 aa21.74■■□□□ 1.07
PPP4R3A-201ENST00000554308 ARID3CA6NKF2 412 aa21.74■■□□□ 1.07
PPP4R3A-201ENST00000554308 FAM50AQ14320 339 aaKnown RBP21.73■■□□□ 1.07
PPP4R3A-201ENST00000554308 MAGI1Q96QZ7 1491 aaPredicted RBP21.71■■□□□ 1.07
PPP4R3A-201ENST00000554308 MTUS2Q5JR59 1369 aa21.69■■□□□ 1.06
PPP4R3A-201ENST00000554308 KIAA0586Q9BVV6 1533 aa21.69■■□□□ 1.06
PPP4R3A-201ENST00000554308 SYNJ2O15056 1496 aa21.68■■□□□ 1.06
PPP4R3A-201ENST00000554308 CFAP43Q8NDM7 1665 aa21.67■■□□□ 1.06
PPP4R3A-201ENST00000554308 ZNF316A6NFI3 1004 aaPredicted RBP21.66■■□□□ 1.06
PPP4R3A-201ENST00000554308 YTHDC1Q96MU7 727 aaKnown RBP21.63■■□□□ 1.05
PPP4R3A-201ENST00000554308 UGGT2Q9NYU1 1516 aa21.62■■□□□ 1.05
PPP4R3A-201ENST00000554308 JPH4Q96JJ6 628 aa21.6■■□□□ 1.05
PPP4R3A-201ENST00000554308 DISP1Q96F81 1524 aa21.59■■□□□ 1.05
PPP4R3A-201ENST00000554308 CEP170Q5SW79 1584 aa21.58■■□□□ 1.05
PPP4R3A-201ENST00000554308 LRRIQ1Q96JM4 1722 aa21.57■■□□□ 1.04
PPP4R3A-201ENST00000554308 KIAA0556O60303 1618 aa21.53■■□□□ 1.04
PPP4R3A-201ENST00000554308 EPRSP07814 1512 aaKnown RBP21.52■■□□□ 1.04
PPP4R3A-201ENST00000554308 MIER1Q8N108 512 aa21.52■■□□□ 1.03
PPP4R3A-201ENST00000554308 NUP160Q12769 1436 aa21.51■■□□□ 1.03
PPP4R3A-201ENST00000554308 CDK13Q14004 1512 aaKnown RBP21.51■■□□□ 1.03
PPP4R3A-201ENST00000554308 NCOA2Q15596 1464 aa21.5■■□□□ 1.03
PPP4R3A-201ENST00000554308 CCDC18Q5T9S5 1454 aa21.5■■□□□ 1.03
PPP4R3A-201ENST00000554308 DHX57Q6P158 1386 aaKnown RBP21.5■■□□□ 1.03
PPP4R3A-201ENST00000554308 HECW1Q76N89 1606 aa21.49■■□□□ 1.03
PPP4R3A-201ENST00000554308 FGD6Q6ZV73 1430 aa21.49■■□□□ 1.03
PPP4R3A-201ENST00000554308 MAGI3Q5TCQ9 1506 aa21.48■■□□□ 1.03
PPP4R3A-201ENST00000554308 RAB3GAP2Q9H2M9 1393 aa21.48■■□□□ 1.03
PPP4R3A-201ENST00000554308 CARMIL2Q6F5E8 1435 aa21.45■■□□□ 1.02
PPP4R3A-201ENST00000554308 EHBP1L1Q8N3D4 1523 aa21.44■■□□□ 1.02
PPP4R3A-201ENST00000554308 MYOM3Q5VTT5 1437 aa21.42■■□□□ 1.02
PPP4R3A-201ENST00000554308 PLB1Q6P1J6 1458 aa21.42■■□□□ 1.02
PPP4R3A-201ENST00000554308 SETD5Q9C0A6 1442 aa21.42■■□□□ 1.02
PPP4R3A-201ENST00000554308 NUP153P49790 1475 aaKnown RBP21.41■■□□□ 1.02
PPP4R3A-201ENST00000554308 SUPT6HQ7KZ85 1726 aaKnown RBP21.41■■□□□ 1.02
PPP4R3A-201ENST00000554308 CDK11AQ9UQ88 783 aaPredicted RBP21.38■■□□□ 1.01
PPP4R3A-201ENST00000554308 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.38■■□□□ 1.01
PPP4R3A-201ENST00000554308 RAPGEF6Q8TEU7 1601 aa21.36■■□□□ 1.01
PPP4R3A-201ENST00000554308 CLSPNQ9HAW4 1339 aa21.36■■□□□ 1.01
PPP4R3A-201ENST00000554308 PRG4Q92954 1404 aaPredicted RBP21.35■■□□□ 1.01
PPP4R3A-201ENST00000554308 CHIC2Q9UKJ5 165 aa21.34■■□□□ 1.01
PPP4R3A-201ENST00000554308 PTPRKQ15262 1439 aa21.34■■□□□ 1.01
PPP4R3A-201ENST00000554308 ARHGEF11O15085 1522 aa21.32■■□□□ 1
PPP4R3A-201ENST00000554308 CHD1O14646 1710 aa21.3■■□□□ 1
PPP4R3A-201ENST00000554308 PTPN23Q9H3S7 1636 aa21.28■■□□□ 1
PPP4R3A-201ENST00000554308 RRP7BPQ9NSQ0 103 aa21.27■■□□□ 1
PPP4R3A-201ENST00000554308 PTPRGP23470 1445 aa21.27■■□□□ 1
PPP4R3A-201ENST00000554308 ZNF644Q9H582 1327 aaPredicted RBP21.26■□□□□ 0.99
PPP4R3A-201ENST00000554308 PLEKHD1A6NEE1 506 aa21.24■□□□□ 0.99
PPP4R3A-201ENST00000554308 TROQ12816 1431 aaPredicted RBP21.22■□□□□ 0.99
PPP4R3A-201ENST00000554308 ZNF777Q9ULD5 760 aaPredicted RBP21.21■□□□□ 0.99
PPP4R3A-201ENST00000554308 MIA2Q96PC5 1412 aa21.21■□□□□ 0.99
PPP4R3A-201ENST00000554308 SIN3AQ96ST3 1273 aa21.21■□□□□ 0.99
PPP4R3A-201ENST00000554308 CFDP1Q9UEE9 299 aaPredicted RBP21.2■□□□□ 0.98
PPP4R3A-201ENST00000554308 HFM1A2PYH4 1435 aa21.19■□□□□ 0.98
PPP4R3A-201ENST00000554308 MAPKBP1O60336 1514 aa21.18■□□□□ 0.98
PPP4R3A-201ENST00000554308 ATP10BO94823 1461 aa21.18■□□□□ 0.98
PPP4R3A-201ENST00000554308 TCOF1Q13428 1488 aaKnown RBP21.18■□□□□ 0.98
PPP4R3A-201ENST00000554308 NAIPQ13075 1403 aa21.18■□□□□ 0.98
PPP4R3A-201ENST00000554308 ABCA8O94911 1581 aa21.17■□□□□ 0.98
PPP4R3A-201ENST00000554308 MYT1Q01538 1121 aa21.14■□□□□ 0.98
PPP4R3A-201ENST00000554308 ERCC6L2Q5T890 1561 aa21.14■□□□□ 0.97
PPP4R3A-201ENST00000554308 KIF14Q15058 1648 aa21.12■□□□□ 0.97
PPP4R3A-201ENST00000554308 TRIM52Q96A61 297 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms