RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 JPH4Q96JJ6 628 aa19.67■□□□□ 0.74
CCDC88C-208ENST00000554165 SHROOM2Q13796 1616 aa19.66■□□□□ 0.74
CCDC88C-208ENST00000554165 PRG4Q92954 1404 aaPredicted RBP19.64■□□□□ 0.73
CCDC88C-208ENST00000554165 KIAA0586Q9BVV6 1533 aa19.61■□□□□ 0.73
CCDC88C-208ENST00000554165 RAPGEF2Q9Y4G8 1499 aa19.57■□□□□ 0.72
CCDC88C-208ENST00000554165 CHIC1Q5VXU3 224 aa19.57■□□□□ 0.72
CCDC88C-208ENST00000554165 FAM9AQ8IZU1 332 aaPredicted RBP19.51■□□□□ 0.71
CCDC88C-208ENST00000554165 PRXQ9BXM0 1461 aa19.49■□□□□ 0.71
CCDC88C-208ENST00000554165 CSRNP3Q8WYN3 585 aa19.49■□□□□ 0.71
CCDC88C-208ENST00000554165 TRHP20396 242 aaPredicted RBP19.47■□□□□ 0.71
CCDC88C-208ENST00000554165 IQGAP2Q13576 1575 aa19.47■□□□□ 0.71
CCDC88C-208ENST00000554165 TTBK1Q5TCY1 1321 aaPredicted RBP19.46■□□□□ 0.71
CCDC88C-208ENST00000554165 DISP1Q96F81 1524 aa19.4■□□□□ 0.7
CCDC88C-208ENST00000554165 PTPRGP23470 1445 aa19.38■□□□□ 0.69
CCDC88C-208ENST00000554165 EEA1Q15075 1411 aa19.37■□□□□ 0.69
CCDC88C-208ENST00000554165 CARMIL2Q6F5E8 1435 aa19.37■□□□□ 0.69
CCDC88C-208ENST00000554165 UGGT2Q9NYU1 1516 aa19.36■□□□□ 0.69
CCDC88C-208ENST00000554165 TNIKQ9UKE5 1360 aa19.35■□□□□ 0.69
CCDC88C-208ENST00000554165 CTTNBP2Q8WZ74 1663 aa19.34■□□□□ 0.69
CCDC88C-208ENST00000554165 ADCY10Q96PN6 1610 aa19.33■□□□□ 0.69
CCDC88C-208ENST00000554165 EHMT2Q96KQ7 1210 aa19.33■□□□□ 0.68
CCDC88C-208ENST00000554165 KIAA0556O60303 1618 aa19.29■□□□□ 0.68
CCDC88C-208ENST00000554165 NPM1P06748 294 aaKnown RBP eCLIP19.26■□□□□ 0.67
CCDC88C-208ENST00000554165 RANGAP1P46060 587 aaPredicted RBP19.26■□□□□ 0.67
CCDC88C-208ENST00000554165 P3H3Q8IVL6 736 aa19.26■□□□□ 0.67
CCDC88C-208ENST00000554165 UACAQ9BZF9 1416 aa19.23■□□□□ 0.67
CCDC88C-208ENST00000554165 KIF21BO75037 1637 aa19.22■□□□□ 0.67
CCDC88C-208ENST00000554165 GOLGA3Q08378 1498 aa19.21■□□□□ 0.67
CCDC88C-208ENST00000554165 PLB1Q6P1J6 1458 aa19.18■□□□□ 0.66
CCDC88C-208ENST00000554165 ABCC2Q92887 1545 aa19.18■□□□□ 0.66
CCDC88C-208ENST00000554165 UHRF1BP1LA0JNW5 1464 aa19.17■□□□□ 0.66
CCDC88C-208ENST00000554165 MAPKBP1O60336 1514 aa19.16■□□□□ 0.66
CCDC88C-208ENST00000554165 UBTFP17480 764 aaKnown RBP19.15■□□□□ 0.66
CCDC88C-208ENST00000554165 FAM69CQ0P6D2 419 aa19.15■□□□□ 0.66
CCDC88C-208ENST00000554165 KIF13AQ9H1H9 1805 aa19.15■□□□□ 0.66
CCDC88C-208ENST00000554165 ABCC10Q5T3U5 1492 aa19.13■□□□□ 0.65
CCDC88C-208ENST00000554165 SAMD9Q5K651 1589 aa19.12■□□□□ 0.65
CCDC88C-208ENST00000554165 ASXL2Q76L83 1435 aa19.11■□□□□ 0.65
CCDC88C-208ENST00000554165 ARID3CA6NKF2 412 aa19.11■□□□□ 0.65
CCDC88C-208ENST00000554165 ABCA8O94911 1581 aa19.1■□□□□ 0.65
CCDC88C-208ENST00000554165 KDM5BQ9UGL1 1544 aa19.1■□□□□ 0.65
CCDC88C-208ENST00000554165 DIP2BQ9P265 1576 aa19.1■□□□□ 0.65
CCDC88C-208ENST00000554165 FHOD3Q2V2M9 1422 aa19.09■□□□□ 0.65
CCDC88C-208ENST00000554165 ZCCHC11Q5TAX3 1644 aaKnown RBP19.07■□□□□ 0.64
CCDC88C-208ENST00000554165 TSPOAP1O95153 1857 aa18.99■□□□□ 0.63
CCDC88C-208ENST00000554165 ATP10BO94823 1461 aa18.98■□□□□ 0.63
CCDC88C-208ENST00000554165 EFCAB5A4FU69 1503 aa18.98■□□□□ 0.63
CCDC88C-208ENST00000554165 EPRSP07814 1512 aaKnown RBP18.98■□□□□ 0.63
CCDC88C-208ENST00000554165 KCNH8Q96L42 1107 aa18.97■□□□□ 0.63
CCDC88C-208ENST00000554165 ARHGAP35Q9NRY4 1499 aa18.97■□□□□ 0.63
CCDC88C-208ENST00000554165 WDR7Q9Y4E6 1490 aa18.97■□□□□ 0.63
CCDC88C-208ENST00000554165 RAPGEF6Q8TEU7 1601 aa18.96■□□□□ 0.63
CCDC88C-208ENST00000554165 NUP153P49790 1475 aaKnown RBP18.94■□□□□ 0.62
CCDC88C-208ENST00000554165 GLI2P10070 1586 aa18.93■□□□□ 0.62
CCDC88C-208ENST00000554165 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.91■□□□□ 0.62
CCDC88C-208ENST00000554165 HNRNPUL2Q1KMD3 747 aaKnown RBP18.91■□□□□ 0.62
CCDC88C-208ENST00000554165 PPRC1Q5VV67 1664 aaKnown RBP18.89■□□□□ 0.61
CCDC88C-208ENST00000554165 ATP1B4Q9UN42 357 aaPredicted RBP18.87■□□□□ 0.61
CCDC88C-208ENST00000554165 MAP3K4Q9Y6R4 1608 aa18.87■□□□□ 0.61
CCDC88C-208ENST00000554165 LOC105371045A0A1W2PR82 267 aa18.84■□□□□ 0.61
CCDC88C-208ENST00000554165 CDK13Q14004 1512 aaKnown RBP18.84■□□□□ 0.61
CCDC88C-208ENST00000554165 FMN1Q68DA7 1419 aa18.83■□□□□ 0.6
CCDC88C-208ENST00000554165 CD109Q6YHK3 1445 aa18.82■□□□□ 0.6
CCDC88C-208ENST00000554165 CLIP1P30622 1438 aa18.81■□□□□ 0.6
CCDC88C-208ENST00000554165 COL17A1Q9UMD9 1497 aaPredicted RBP18.8■□□□□ 0.6
CCDC88C-208ENST00000554165 KDM6BO15054 1643 aa18.8■□□□□ 0.6
CCDC88C-208ENST00000554165 PLEKHD1A6NEE1 506 aa18.79■□□□□ 0.6
CCDC88C-208ENST00000554165 CFAP43Q8NDM7 1665 aa18.76■□□□□ 0.59
CCDC88C-208ENST00000554165 TEX14Q8IWB6 1497 aa18.75■□□□□ 0.59
CCDC88C-208ENST00000554165 MAGI3Q5TCQ9 1506 aa18.74■□□□□ 0.59
CCDC88C-208ENST00000554165 HECW1Q76N89 1606 aa18.74■□□□□ 0.59
CCDC88C-208ENST00000554165 ABCA9Q8IUA7 1624 aa18.73■□□□□ 0.59
CCDC88C-208ENST00000554165 PCF11O94913 1555 aaKnown RBP18.72■□□□□ 0.59
CCDC88C-208ENST00000554165 LRRIQ1Q96JM4 1722 aa18.71■□□□□ 0.59
CCDC88C-208ENST00000554165 CEP162Q5TB80 1403 aa18.71■□□□□ 0.59
CCDC88C-208ENST00000554165 CASKIN1Q8WXD9 1431 aa18.7■□□□□ 0.58
CCDC88C-208ENST00000554165 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.68■□□□□ 0.58
CCDC88C-208ENST00000554165 TTC37Q6PGP7 1564 aa18.66■□□□□ 0.58
CCDC88C-208ENST00000554165 CDK11AQ9UQ88 783 aaPredicted RBP18.63■□□□□ 0.57
CCDC88C-208ENST00000554165 FYCO1Q9BQS8 1478 aa18.63■□□□□ 0.57
CCDC88C-208ENST00000554165 TROQ12816 1431 aaPredicted RBP18.62■□□□□ 0.57
CCDC88C-208ENST00000554165 KIF14Q15058 1648 aa18.62■□□□□ 0.57
CCDC88C-208ENST00000554165 RAPGEF3O95398 923 aa18.6■□□□□ 0.57
CCDC88C-208ENST00000554165 ARAP3Q8WWN8 1544 aa18.59■□□□□ 0.57
CCDC88C-208ENST00000554165 CCDC18Q5T9S5 1454 aa18.58■□□□□ 0.57
CCDC88C-208ENST00000554165 NEO1Q92859 1461 aa18.58■□□□□ 0.56
CCDC88C-208ENST00000554165 FANCAO15360 1455 aa18.56■□□□□ 0.56
CCDC88C-208ENST00000554165 PLCH2O75038 1416 aa18.55■□□□□ 0.56
CCDC88C-208ENST00000554165 AKNAQ7Z591 1439 aa18.55■□□□□ 0.56
CCDC88C-208ENST00000554165 PHLDB1Q86UU1 1377 aa18.55■□□□□ 0.56
CCDC88C-208ENST00000554165 KDM4FA0A1W2PPD8 638 aa18.54■□□□□ 0.56
CCDC88C-208ENST00000554165 FRMPD1Q5SYB0 1578 aa18.51■□□□□ 0.55
CCDC88C-208ENST00000554165 EFCAB2Q5VUJ9 269 aa18.49■□□□□ 0.55
CCDC88C-208ENST00000554165 MYO5CQ9NQX4 1742 aa18.49■□□□□ 0.55
CCDC88C-208ENST00000554165 DENND4BO75064 1496 aaPredicted RBP18.48■□□□□ 0.55
CCDC88C-208ENST00000554165 SCAPERQ9BY12 1400 aa18.47■□□□□ 0.55
CCDC88C-208ENST00000554165 ARHGAP5Q13017 1502 aa18.46■□□□□ 0.55
CCDC88C-208ENST00000554165 VPS8Q8N3P4 1428 aa18.46■□□□□ 0.55
CCDC88C-208ENST00000554165 CFAP74Q9C0B2 1584 aa18.46■□□□□ 0.55
CCDC88C-208ENST00000554165 ADGRL1O94910 1474 aa18.46■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms