RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 FBLN2P98095 1184 aa23.47■■□□□ 1.35
SHMT2-210ENST00000553950 KIAA0586Q9BVV6 1533 aa23.45■■□□□ 1.34
SHMT2-210ENST00000553950 CLASP1Q7Z460 1538 aa23.39■■□□□ 1.34
SHMT2-210ENST00000553950 EFCAB5A4FU69 1503 aa23.38■■□□□ 1.33
SHMT2-210ENST00000553950 EHMT2Q96KQ7 1210 aa23.38■■□□□ 1.33
SHMT2-210ENST00000553950 LOC105371045A0A1W2PR82 267 aa23.37■■□□□ 1.33
SHMT2-210ENST00000553950 UGGT2Q9NYU1 1516 aa23.34■■□□□ 1.33
SHMT2-210ENST00000553950 CEP162Q5TB80 1403 aa23.33■■□□□ 1.33
SHMT2-210ENST00000553950 SHROOM2Q13796 1616 aa23.33■■□□□ 1.33
SHMT2-210ENST00000553950 SAMD9Q5K651 1589 aa23.31■■□□□ 1.32
SHMT2-210ENST00000553950 CLIP1P30622 1438 aa23.28■■□□□ 1.32
SHMT2-210ENST00000553950 OSCARQ8IYS5 282 aa23.25■■□□□ 1.31
SHMT2-210ENST00000553950 KIAA0556O60303 1618 aa23.25■■□□□ 1.31
SHMT2-210ENST00000553950 CARMIL2Q6F5E8 1435 aa23.22■■□□□ 1.31
SHMT2-210ENST00000553950 ARHGAP35Q9NRY4 1499 aa23.19■■□□□ 1.3
SHMT2-210ENST00000553950 DISP1Q96F81 1524 aa23.16■■□□□ 1.3
SHMT2-210ENST00000553950 JPH4Q96JJ6 628 aa23.14■■□□□ 1.29
SHMT2-210ENST00000553950 PRG4Q92954 1404 aaPredicted RBP23.12■■□□□ 1.29
SHMT2-210ENST00000553950 ARAP1Q96P48 1450 aa23.11■■□□□ 1.29
SHMT2-210ENST00000553950 FMN1Q68DA7 1419 aa23.08■■□□□ 1.29
SHMT2-210ENST00000553950 RANGAP1P46060 587 aaPredicted RBP23.08■■□□□ 1.29
SHMT2-210ENST00000553950 FHOD3Q2V2M9 1422 aa23.07■■□□□ 1.28
SHMT2-210ENST00000553950 VPS8Q8N3P4 1428 aa23.05■■□□□ 1.28
SHMT2-210ENST00000553950 ERCC6L2Q5T890 1561 aa23■■□□□ 1.27
SHMT2-210ENST00000553950 FYCO1Q9BQS8 1478 aa22.98■■□□□ 1.27
SHMT2-210ENST00000553950 ARHGEF11O15085 1522 aa22.98■■□□□ 1.27
SHMT2-210ENST00000553950 PCF11O94913 1555 aaKnown RBP22.98■■□□□ 1.27
SHMT2-210ENST00000553950 HECW1Q76N89 1606 aa22.98■■□□□ 1.27
SHMT2-210ENST00000553950 RAPGEF6Q8TEU7 1601 aa22.97■■□□□ 1.27
SHMT2-210ENST00000553950 RIMBP3CA6NJZ7 1639 aa22.93■■□□□ 1.26
SHMT2-210ENST00000553950 RIMBP3BA6NNM3 1639 aa22.93■■□□□ 1.26
SHMT2-210ENST00000553950 RIMBP3Q9UFD9 1639 aa22.93■■□□□ 1.26
SHMT2-210ENST00000553950 P3H3Q8IVL6 736 aa22.93■■□□□ 1.26
SHMT2-210ENST00000553950 PTPRGP23470 1445 aa22.92■■□□□ 1.26
SHMT2-210ENST00000553950 CASKIN1Q8WXD9 1431 aa22.92■■□□□ 1.26
SHMT2-210ENST00000553950 ABCA8O94911 1581 aa22.91■■□□□ 1.26
SHMT2-210ENST00000553950 CFAP43Q8NDM7 1665 aa22.88■■□□□ 1.25
SHMT2-210ENST00000553950 CCDC18Q5T9S5 1454 aa22.87■■□□□ 1.25
SHMT2-210ENST00000553950 ABCC2Q92887 1545 aa22.85■■□□□ 1.25
SHMT2-210ENST00000553950 UHRF1BP1LA0JNW5 1464 aa22.84■■□□□ 1.25
SHMT2-210ENST00000553950 UACAQ9BZF9 1416 aa22.83■■□□□ 1.25
SHMT2-210ENST00000553950 MAP3K1Q13233 1512 aa22.82■■□□□ 1.24
SHMT2-210ENST00000553950 PLB1Q6P1J6 1458 aa22.82■■□□□ 1.24
SHMT2-210ENST00000553950 LRRIQ1Q96JM4 1722 aa22.8■■□□□ 1.24
SHMT2-210ENST00000553950 TIAM1Q13009 1591 aa22.79■■□□□ 1.24
SHMT2-210ENST00000553950 NUP153P49790 1475 aaKnown RBP22.78■■□□□ 1.24
SHMT2-210ENST00000553950 ADCY10Q96PN6 1610 aa22.77■■□□□ 1.24
SHMT2-210ENST00000553950 EPRSP07814 1512 aaKnown RBP22.76■■□□□ 1.23
SHMT2-210ENST00000553950 APLP2Q06481 763 aa22.75■■□□□ 1.23
SHMT2-210ENST00000553950 TTBK1Q5TCY1 1321 aaPredicted RBP22.75■■□□□ 1.23
SHMT2-210ENST00000553950 ZCCHC11Q5TAX3 1644 aaKnown RBP22.71■■□□□ 1.23
SHMT2-210ENST00000553950 KDM5BQ9UGL1 1544 aa22.7■■□□□ 1.22
SHMT2-210ENST00000553950 CDK13Q14004 1512 aaKnown RBP22.68■■□□□ 1.22
SHMT2-210ENST00000553950 EHBP1L1Q8N3D4 1523 aa22.68■■□□□ 1.22
SHMT2-210ENST00000553950 ATP1B4Q9UN42 357 aaPredicted RBP22.67■■□□□ 1.22
SHMT2-210ENST00000553950 ATP10BO94823 1461 aa22.62■■□□□ 1.21
SHMT2-210ENST00000553950 CDK11AQ9UQ88 783 aaPredicted RBP22.62■■□□□ 1.21
SHMT2-210ENST00000553950 LRRC9Q6ZRR7 1453 aa22.61■■□□□ 1.21
SHMT2-210ENST00000553950 SUPT6HQ7KZ85 1726 aaKnown RBP22.6■■□□□ 1.21
SHMT2-210ENST00000553950 DNAJC5Q9H3Z4 198 aa22.58■■□□□ 1.21
SHMT2-210ENST00000553950 MTUS2Q5JR59 1369 aa22.58■■□□□ 1.21
SHMT2-210ENST00000553950 KIF14Q15058 1648 aa22.57■■□□□ 1.2
SHMT2-210ENST00000553950 MAPKBP1O60336 1514 aa22.56■■□□□ 1.2
SHMT2-210ENST00000553950 TROQ12816 1431 aaPredicted RBP22.56■■□□□ 1.2
SHMT2-210ENST00000553950 NPM1P06748 294 aaKnown RBP eCLIP22.55■■□□□ 1.2
SHMT2-210ENST00000553950 CYB5RLQ6IPT4 315 aa22.55■■□□□ 1.2
SHMT2-210ENST00000553950 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.54■■□□□ 1.2
SHMT2-210ENST00000553950 HNRNPUL2Q1KMD3 747 aaKnown RBP22.54■■□□□ 1.2
SHMT2-210ENST00000553950 MAGI3Q5TCQ9 1506 aa22.52■■□□□ 1.2
SHMT2-210ENST00000553950 WDR7Q9Y4E6 1490 aa22.51■■□□□ 1.19
SHMT2-210ENST00000553950 PLEKHD1A6NEE1 506 aa22.49■■□□□ 1.19
SHMT2-210ENST00000553950 ARID3CA6NKF2 412 aa22.49■■□□□ 1.19
SHMT2-210ENST00000553950 ITSN2Q9NZM3 1697 aa22.49■■□□□ 1.19
SHMT2-210ENST00000553950 ASXL2Q76L83 1435 aa22.46■■□□□ 1.19
SHMT2-210ENST00000553950 NCOA2Q15596 1464 aa22.42■■□□□ 1.18
SHMT2-210ENST00000553950 MYO5CQ9NQX4 1742 aa22.41■■□□□ 1.18
SHMT2-210ENST00000553950 KANK4Q5T7N3 995 aaPredicted RBP22.41■■□□□ 1.18
SHMT2-210ENST00000553950 ABCA9Q8IUA7 1624 aa22.39■■□□□ 1.18
SHMT2-210ENST00000553950 PREX2Q70Z35 1606 aa22.37■■□□□ 1.17
SHMT2-210ENST00000553950 TTC37Q6PGP7 1564 aa22.37■■□□□ 1.17
SHMT2-210ENST00000553950 CDC42BPAQ5VT25 1732 aa22.37■■□□□ 1.17
SHMT2-210ENST00000553950 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.36■■□□□ 1.17
SHMT2-210ENST00000553950 GLI2P10070 1586 aa22.35■■□□□ 1.17
SHMT2-210ENST00000553950 ABCC10Q5T3U5 1492 aa22.34■■□□□ 1.17
SHMT2-210ENST00000553950 DIP2BQ9P265 1576 aa22.34■■□□□ 1.17
SHMT2-210ENST00000553950 MYOM3Q5VTT5 1437 aa22.33■■□□□ 1.17
SHMT2-210ENST00000553950 ARAP3Q8WWN8 1544 aa22.33■■□□□ 1.17
SHMT2-210ENST00000553950 CCNB3Q8WWL7 1395 aa22.32■■□□□ 1.16
SHMT2-210ENST00000553950 CFAP74Q9C0B2 1584 aa22.3■■□□□ 1.16
SHMT2-210ENST00000553950 MIA2Q96PC5 1412 aa22.29■■□□□ 1.16
SHMT2-210ENST00000553950 MAP3K4Q9Y6R4 1608 aa22.28■■□□□ 1.16
SHMT2-210ENST00000553950 PHLDB1Q86UU1 1377 aa22.27■■□□□ 1.16
SHMT2-210ENST00000553950 PPARGC1BQ86YN6 1023 aaKnown RBP22.27■■□□□ 1.16
SHMT2-210ENST00000553950 CDC42BPBQ9Y5S2 1711 aa22.27■■□□□ 1.16
SHMT2-210ENST00000553950 KIF13AQ9H1H9 1805 aa22.27■■□□□ 1.15
SHMT2-210ENST00000553950 FGD6Q6ZV73 1430 aa22.26■■□□□ 1.15
SHMT2-210ENST00000553950 RRBP1Q9P2E9 1410 aaKnown RBP22.25■■□□□ 1.15
SHMT2-210ENST00000553950 GPATCH8Q9UKJ3 1502 aaKnown RBP22.25■■□□□ 1.15
SHMT2-210ENST00000553950 PTPN23Q9H3S7 1636 aa22.24■■□□□ 1.15
SHMT2-210ENST00000553950 ARHGAP5Q13017 1502 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms