RNA–Protein interactions for RNA: ENST00000553569.1

TDP1-206, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 879 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-206ENST00000553569 KIAA0586Q9BVV6 1533 aa38.18■■■■□ 3.7
TDP1-206ENST00000553569 EEA1Q15075 1411 aa38.18■■■■□ 3.7
TDP1-206ENST00000553569 ERCC6L2Q5T890 1561 aa38.18■■■■□ 3.7
TDP1-206ENST00000553569 PRXQ9BXM0 1461 aa38.15■■■■□ 3.7
TDP1-206ENST00000553569 CYB5RLQ6IPT4 315 aa38.14■■■■□ 3.7
TDP1-206ENST00000553569 FAM9AQ8IZU1 332 aaPredicted RBP38.12■■■■□ 3.69
TDP1-206ENST00000553569 CSRNP3Q8WYN3 585 aa38.11■■■■□ 3.69
TDP1-206ENST00000553569 JPH4Q96JJ6 628 aa38.11■■■■□ 3.69
TDP1-206ENST00000553569 PRG4Q92954 1404 aaPredicted RBP38.09■■■■□ 3.69
TDP1-206ENST00000553569 IQGAP2Q13576 1575 aa38.05■■■■□ 3.68
TDP1-206ENST00000553569 CTTNBP2Q8WZ74 1663 aa37.98■■■■□ 3.67
TDP1-206ENST00000553569 KIF21BO75037 1637 aa37.84■■■■□ 3.65
TDP1-206ENST00000553569 UGGT2Q9NYU1 1516 aa37.81■■■■□ 3.64
TDP1-206ENST00000553569 CARMIL2Q6F5E8 1435 aa37.78■■■■□ 3.64
TDP1-206ENST00000553569 DISP1Q96F81 1524 aa37.74■■■■□ 3.63
TDP1-206ENST00000553569 KIAA0556O60303 1618 aa37.69■■■■□ 3.62
TDP1-206ENST00000553569 EHMT2Q96KQ7 1210 aa37.68■■■■□ 3.62
TDP1-206ENST00000553569 TTBK1Q5TCY1 1321 aaPredicted RBP37.66■■■■□ 3.62
TDP1-206ENST00000553569 TNIKQ9UKE5 1360 aa37.65■■■■□ 3.62
TDP1-206ENST00000553569 PTPRGP23470 1445 aa37.62■■■■□ 3.61
TDP1-206ENST00000553569 GOLGA3Q08378 1498 aa37.62■■■■□ 3.61
TDP1-206ENST00000553569 ADCY10Q96PN6 1610 aa37.54■■■■□ 3.6
TDP1-206ENST00000553569 UBTFP17480 764 aaKnown RBP37.51■■■■□ 3.6
TDP1-206ENST00000553569 RANGAP1P46060 587 aaPredicted RBP37.49■■■■□ 3.59
TDP1-206ENST00000553569 SAMD9Q5K651 1589 aa37.46■■■■□ 3.59
TDP1-206ENST00000553569 P3H3Q8IVL6 736 aa37.41■■■■□ 3.58
TDP1-206ENST00000553569 UACAQ9BZF9 1416 aa37.37■■■■□ 3.57
TDP1-206ENST00000553569 TRHP20396 242 aaPredicted RBP37.36■■■■□ 3.57
TDP1-206ENST00000553569 NPM1P06748 294 aaKnown RBP eCLIP37.35■■■■□ 3.57
TDP1-206ENST00000553569 ABCC2Q92887 1545 aa37.34■■■■□ 3.57
TDP1-206ENST00000553569 UHRF1BP1LA0JNW5 1464 aa37.33■■■■□ 3.57
TDP1-206ENST00000553569 EFCAB5A4FU69 1503 aa37.3■■■■□ 3.56
TDP1-206ENST00000553569 PLB1Q6P1J6 1458 aa37.29■■■■□ 3.56
TDP1-206ENST00000553569 FHOD3Q2V2M9 1422 aa37.27■■■■□ 3.56
TDP1-206ENST00000553569 ABCA8O94911 1581 aa37.25■■■■□ 3.55
TDP1-206ENST00000553569 MAPKBP1O60336 1514 aa37.23■■■■□ 3.55
TDP1-206ENST00000553569 ZCCHC11Q5TAX3 1644 aaKnown RBP37.15■■■■□ 3.54
TDP1-206ENST00000553569 KDM5BQ9UGL1 1544 aa37.15■■■■□ 3.54
TDP1-206ENST00000553569 ARHGAP35Q9NRY4 1499 aa37.13■■■■□ 3.53
TDP1-206ENST00000553569 RAPGEF6Q8TEU7 1601 aa37.1■■■■□ 3.53
TDP1-206ENST00000553569 KIF13AQ9H1H9 1805 aa37.08■■■■□ 3.53
TDP1-206ENST00000553569 ASXL2Q76L83 1435 aa37.05■■■■□ 3.52
TDP1-206ENST00000553569 DIP2BQ9P265 1576 aa37.04■■■■□ 3.52
TDP1-206ENST00000553569 ABCC10Q5T3U5 1492 aa37.03■■■■□ 3.52
TDP1-206ENST00000553569 ARID3CA6NKF2 412 aa37.01■■■■□ 3.52
TDP1-206ENST00000553569 FAM69CQ0P6D2 419 aa36.96■■■■□ 3.51
TDP1-206ENST00000553569 CLIP1P30622 1438 aa36.94■■■■□ 3.5
TDP1-206ENST00000553569 NUP153P49790 1475 aaKnown RBP36.94■■■■□ 3.5
TDP1-206ENST00000553569 FMN1Q68DA7 1419 aa36.93■■■■□ 3.5
TDP1-206ENST00000553569 ATP10BO94823 1461 aa36.91■■■■□ 3.5
TDP1-206ENST00000553569 LOC105371045A0A1W2PR82 267 aa36.91■■■■□ 3.5
TDP1-206ENST00000553569 WDR7Q9Y4E6 1490 aa36.88■■■■□ 3.5
TDP1-206ENST00000553569 EPRSP07814 1512 aaKnown RBP36.83■■■■□ 3.49
TDP1-206ENST00000553569 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP36.82■■■■□ 3.48
TDP1-206ENST00000553569 HNRNPUL2Q1KMD3 747 aaKnown RBP36.82■■■■□ 3.48
TDP1-206ENST00000553569 CEP162Q5TB80 1403 aa36.81■■■■□ 3.48
TDP1-206ENST00000553569 HECW1Q76N89 1606 aa36.81■■■■□ 3.48
TDP1-206ENST00000553569 GLI2P10070 1586 aa36.79■■■■□ 3.48
TDP1-206ENST00000553569 TSPOAP1O95153 1857 aa36.79■■■■□ 3.48
TDP1-206ENST00000553569 ATP1B4Q9UN42 357 aaPredicted RBP36.78■■■■□ 3.48
TDP1-206ENST00000553569 PCF11O94913 1555 aaKnown RBP36.74■■■■□ 3.47
TDP1-206ENST00000553569 CDK13Q14004 1512 aaKnown RBP36.74■■■■□ 3.47
TDP1-206ENST00000553569 KCNH8Q96L42 1107 aa36.72■■■■□ 3.47
TDP1-206ENST00000553569 MAP3K4Q9Y6R4 1608 aa36.67■■■■□ 3.46
TDP1-206ENST00000553569 CASKIN1Q8WXD9 1431 aa36.65■■■■□ 3.46
TDP1-206ENST00000553569 LRRIQ1Q96JM4 1722 aa36.65■■■■□ 3.46
TDP1-206ENST00000553569 PPRC1Q5VV67 1664 aaKnown RBP36.62■■■■□ 3.45
TDP1-206ENST00000553569 FYCO1Q9BQS8 1478 aa36.6■■■■□ 3.45
TDP1-206ENST00000553569 CFAP43Q8NDM7 1665 aa36.6■■■■□ 3.45
TDP1-206ENST00000553569 PLEKHD1A6NEE1 506 aa36.58■■■■□ 3.45
TDP1-206ENST00000553569 ABCA9Q8IUA7 1624 aa36.52■■■■□ 3.44
TDP1-206ENST00000553569 CD109Q6YHK3 1445 aa36.51■■■■□ 3.44
TDP1-206ENST00000553569 CCDC18Q5T9S5 1454 aa36.51■■■■□ 3.44
TDP1-206ENST00000553569 TEX14Q8IWB6 1497 aa36.47■■■■□ 3.43
TDP1-206ENST00000553569 CDK11AQ9UQ88 783 aaPredicted RBP36.44■■■■□ 3.42
TDP1-206ENST00000553569 KDM6BO15054 1643 aa36.43■■■■□ 3.42
TDP1-206ENST00000553569 MAGI3Q5TCQ9 1506 aa36.43■■■■□ 3.42
TDP1-206ENST00000553569 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP36.39■■■■□ 3.42
TDP1-206ENST00000553569 TROQ12816 1431 aaPredicted RBP36.38■■■■□ 3.41
TDP1-206ENST00000553569 TTC37Q6PGP7 1564 aa36.38■■■■□ 3.41
TDP1-206ENST00000553569 KIF14Q15058 1648 aa36.35■■■■□ 3.41
TDP1-206ENST00000553569 VPS8Q8N3P4 1428 aa36.34■■■■□ 3.41
TDP1-206ENST00000553569 COL17A1Q9UMD9 1497 aaPredicted RBP36.23■■■■□ 3.39
TDP1-206ENST00000553569 MYO5CQ9NQX4 1742 aa36.21■■■■□ 3.39
TDP1-206ENST00000553569 NEO1Q92859 1461 aa36.18■■■■□ 3.38
TDP1-206ENST00000553569 CFAP74Q9C0B2 1584 aa36.16■■■■□ 3.38
TDP1-206ENST00000553569 MTUS2Q5JR59 1369 aa36.15■■■■□ 3.38
TDP1-206ENST00000553569 FANCAO15360 1455 aa36.15■■■■□ 3.38
TDP1-206ENST00000553569 PLCH2O75038 1416 aa36.13■■■■□ 3.37
TDP1-206ENST00000553569 TIAM1Q13009 1591 aa36.13■■■■□ 3.37
TDP1-206ENST00000553569 EHBP1L1Q8N3D4 1523 aa36.12■■■■□ 3.37
TDP1-206ENST00000553569 ARAP3Q8WWN8 1544 aa36.1■■■■□ 3.37
TDP1-206ENST00000553569 PHLDB1Q86UU1 1377 aa36.1■■■■□ 3.37
TDP1-206ENST00000553569 ARHGAP5Q13017 1502 aa36.06■■■■□ 3.36
TDP1-206ENST00000553569 AKNAQ7Z591 1439 aa36.06■■■■□ 3.36
TDP1-206ENST00000553569 PREX2Q70Z35 1606 aa36.05■■■■□ 3.36
TDP1-206ENST00000553569 CDC42BPAQ5VT25 1732 aa36.03■■■■□ 3.36
TDP1-206ENST00000553569 CDC42BPBQ9Y5S2 1711 aa36.03■■■■□ 3.36
TDP1-206ENST00000553569 EFCAB2Q5VUJ9 269 aa35.98■■■■□ 3.35
TDP1-206ENST00000553569 ADGRL1O94910 1474 aa35.97■■■■□ 3.35
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms