RNA–Protein interactions for RNA: ENST00000553396.1

LINC00517-201, long intergenic non-protein coding RNA 517, humanhuman

TSL 3

Gene LINC00517, Length 774 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00517-201ENST00000553396 IGF1RP08069 1367 aa17.48■□□□□ 0.39
LINC00517-201ENST00000553396 ERCC6L2Q5T890 1561 aa17.43■□□□□ 0.38
LINC00517-201ENST00000553396 SHROOM2Q13796 1616 aa17.43■□□□□ 0.38
LINC00517-201ENST00000553396 RUSC2Q8N2Y8 1516 aa17.42■□□□□ 0.38
LINC00517-201ENST00000553396 CARMIL1Q5VZK9 1371 aa17.38■□□□□ 0.37
LINC00517-201ENST00000553396 POTEDQ86YR6 584 aa17.37■□□□□ 0.37
LINC00517-201ENST00000553396 PRG4Q92954 1404 aaPredicted RBP17.34■□□□□ 0.37
LINC00517-201ENST00000553396 KIAA0586Q9BVV6 1533 aa17.31■□□□□ 0.36
LINC00517-201ENST00000553396 JPH4Q96JJ6 628 aa17.31■□□□□ 0.36
LINC00517-201ENST00000553396 RAPGEF2Q9Y4G8 1499 aa17.28■□□□□ 0.36
LINC00517-201ENST00000553396 IQGAP2Q13576 1575 aa17.24■□□□□ 0.35
LINC00517-201ENST00000553396 MSH5O43196 834 aa17.24■□□□□ 0.35
LINC00517-201ENST00000553396 TRHP20396 242 aaPredicted RBP17.21■□□□□ 0.35
LINC00517-201ENST00000553396 CTTNBP2Q8WZ74 1663 aa17.19■□□□□ 0.34
LINC00517-201ENST00000553396 PRXQ9BXM0 1461 aa17.18■□□□□ 0.34
LINC00517-201ENST00000553396 TTBK1Q5TCY1 1321 aaPredicted RBP17.14■□□□□ 0.33
LINC00517-201ENST00000553396 CARMIL2Q6F5E8 1435 aa17.13■□□□□ 0.33
LINC00517-201ENST00000553396 ADCY10Q96PN6 1610 aa17.12■□□□□ 0.33
LINC00517-201ENST00000553396 CSRNP3Q8WYN3 585 aa17.12■□□□□ 0.33
LINC00517-201ENST00000553396 DISP1Q96F81 1524 aa17.11■□□□□ 0.33
LINC00517-201ENST00000553396 UGGT2Q9NYU1 1516 aa17.11■□□□□ 0.33
LINC00517-201ENST00000553396 FAM9AQ8IZU1 332 aaPredicted RBP17.11■□□□□ 0.33
LINC00517-201ENST00000553396 EEA1Q15075 1411 aa17.11■□□□□ 0.33
LINC00517-201ENST00000553396 TNIKQ9UKE5 1360 aa17.09■□□□□ 0.33
LINC00517-201ENST00000553396 PTPRGP23470 1445 aa17.09■□□□□ 0.33
LINC00517-201ENST00000553396 KIAA0556O60303 1618 aa17.09■□□□□ 0.33
LINC00517-201ENST00000553396 NPM1P06748 294 aaKnown RBP eCLIP17.02■□□□□ 0.32
LINC00517-201ENST00000553396 PIAS4Q8N2W9 510 aaPredicted RBP17.02■□□□□ 0.32
LINC00517-201ENST00000553396 KIF13AQ9H1H9 1805 aa17.02■□□□□ 0.31
LINC00517-201ENST00000553396 GOLGA3Q08378 1498 aa17■□□□□ 0.31
LINC00517-201ENST00000553396 KIF21BO75037 1637 aa17■□□□□ 0.31
LINC00517-201ENST00000553396 PLPPR3Q6T4P5 718 aa17■□□□□ 0.31
LINC00517-201ENST00000553396 MAPKBP1O60336 1514 aa17■□□□□ 0.31
LINC00517-201ENST00000553396 UACAQ9BZF9 1416 aa16.97■□□□□ 0.31
LINC00517-201ENST00000553396 ABCC2Q92887 1545 aa16.97■□□□□ 0.31
LINC00517-201ENST00000553396 UHRF1BP1LA0JNW5 1464 aa16.95■□□□□ 0.3
LINC00517-201ENST00000553396 DIP2BQ9P265 1576 aa16.94■□□□□ 0.3
LINC00517-201ENST00000553396 EHMT2Q96KQ7 1210 aa16.94■□□□□ 0.3
LINC00517-201ENST00000553396 ABCC10Q5T3U5 1492 aa16.93■□□□□ 0.3
LINC00517-201ENST00000553396 PLB1Q6P1J6 1458 aa16.93■□□□□ 0.3
LINC00517-201ENST00000553396 RANGAP1P46060 587 aaPredicted RBP16.92■□□□□ 0.3
LINC00517-201ENST00000553396 P3H3Q8IVL6 736 aa16.92■□□□□ 0.3
LINC00517-201ENST00000553396 SAMD9Q5K651 1589 aa16.92■□□□□ 0.3
LINC00517-201ENST00000553396 ZCCHC11Q5TAX3 1644 aaKnown RBP16.91■□□□□ 0.3
LINC00517-201ENST00000553396 FAM69CQ0P6D2 419 aa16.9■□□□□ 0.3
LINC00517-201ENST00000553396 PPP6R1Q9UPN7 881 aa16.89■□□□□ 0.29
LINC00517-201ENST00000553396 KDM5BQ9UGL1 1544 aa16.89■□□□□ 0.29
LINC00517-201ENST00000553396 ABCA8O94911 1581 aa16.89■□□□□ 0.29
LINC00517-201ENST00000553396 ASXL2Q76L83 1435 aa16.87■□□□□ 0.29
LINC00517-201ENST00000553396 TSPOAP1O95153 1857 aa16.87■□□□□ 0.29
LINC00517-201ENST00000553396 UBTFP17480 764 aaKnown RBP16.85■□□□□ 0.29
LINC00517-201ENST00000553396 FHOD3Q2V2M9 1422 aa16.83■□□□□ 0.28
LINC00517-201ENST00000553396 EFCAB5A4FU69 1503 aa16.81■□□□□ 0.28
LINC00517-201ENST00000553396 ARID3CA6NKF2 412 aa16.81■□□□□ 0.28
LINC00517-201ENST00000553396 ADRA2BP18089 450 aa16.81■□□□□ 0.28
LINC00517-201ENST00000553396 RAPGEF6Q8TEU7 1601 aa16.8■□□□□ 0.28
LINC00517-201ENST00000553396 GLI2P10070 1586 aa16.78■□□□□ 0.28
LINC00517-201ENST00000553396 EPRSP07814 1512 aaKnown RBP16.78■□□□□ 0.28
LINC00517-201ENST00000553396 WDR7Q9Y4E6 1490 aa16.78■□□□□ 0.28
LINC00517-201ENST00000553396 PPRC1Q5VV67 1664 aaKnown RBP16.75■□□□□ 0.27
LINC00517-201ENST00000553396 MAP3K4Q9Y6R4 1608 aa16.74■□□□□ 0.27
LINC00517-201ENST00000553396 ATP10BO94823 1461 aa16.73■□□□□ 0.27
LINC00517-201ENST00000553396 NUP153P49790 1475 aaKnown RBP16.72■□□□□ 0.27
LINC00517-201ENST00000553396 ARHGAP35Q9NRY4 1499 aa16.72■□□□□ 0.27
LINC00517-201ENST00000553396 KDM6BO15054 1643 aa16.7■□□□□ 0.26
LINC00517-201ENST00000553396 KCNH8Q96L42 1107 aa16.7■□□□□ 0.26
LINC00517-201ENST00000553396 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.69■□□□□ 0.26
LINC00517-201ENST00000553396 HNRNPUL2Q1KMD3 747 aaKnown RBP16.69■□□□□ 0.26
LINC00517-201ENST00000553396 CFAP43Q8NDM7 1665 aa16.67■□□□□ 0.26
LINC00517-201ENST00000553396 TEX14Q8IWB6 1497 aa16.64■□□□□ 0.25
LINC00517-201ENST00000553396 FMN1Q68DA7 1419 aa16.63■□□□□ 0.25
LINC00517-201ENST00000553396 CD109Q6YHK3 1445 aa16.62■□□□□ 0.25
LINC00517-201ENST00000553396 CDK13Q14004 1512 aaKnown RBP16.62■□□□□ 0.25
LINC00517-201ENST00000553396 HECW1Q76N89 1606 aa16.62■□□□□ 0.25
LINC00517-201ENST00000553396 ATP1B4Q9UN42 357 aaPredicted RBP16.61■□□□□ 0.25
LINC00517-201ENST00000553396 ABCA9Q8IUA7 1624 aa16.6■□□□□ 0.25
LINC00517-201ENST00000553396 MAGI3Q5TCQ9 1506 aa16.59■□□□□ 0.25
LINC00517-201ENST00000553396 LRRIQ1Q96JM4 1722 aa16.57■□□□□ 0.24
LINC00517-201ENST00000553396 CLIP1P30622 1438 aa16.57■□□□□ 0.24
LINC00517-201ENST00000553396 PCF11O94913 1555 aaKnown RBP16.56■□□□□ 0.24
LINC00517-201ENST00000553396 COL17A1Q9UMD9 1497 aaPredicted RBP16.56■□□□□ 0.24
LINC00517-201ENST00000553396 PLEKHD1A6NEE1 506 aa16.56■□□□□ 0.24
LINC00517-201ENST00000553396 TTC37Q6PGP7 1564 aa16.51■□□□□ 0.23
LINC00517-201ENST00000553396 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.5■□□□□ 0.23
LINC00517-201ENST00000553396 CASKIN1Q8WXD9 1431 aa16.5■□□□□ 0.23
LINC00517-201ENST00000553396 CEP162Q5TB80 1403 aa16.48■□□□□ 0.23
LINC00517-201ENST00000553396 KIF14Q15058 1648 aa16.47■□□□□ 0.23
LINC00517-201ENST00000553396 FYCO1Q9BQS8 1478 aa16.47■□□□□ 0.23
LINC00517-201ENST00000553396 CCDC18Q5T9S5 1454 aa16.46■□□□□ 0.23
LINC00517-201ENST00000553396 LOC105371045A0A1W2PR82 267 aa16.45■□□□□ 0.22
LINC00517-201ENST00000553396 CDK11AQ9UQ88 783 aaPredicted RBP16.45■□□□□ 0.22
LINC00517-201ENST00000553396 ARAP3Q8WWN8 1544 aa16.45■□□□□ 0.22
LINC00517-201ENST00000553396 NEO1Q92859 1461 aa16.44■□□□□ 0.22
LINC00517-201ENST00000553396 TROQ12816 1431 aaPredicted RBP16.44■□□□□ 0.22
LINC00517-201ENST00000553396 MYO5CQ9NQX4 1742 aa16.43■□□□□ 0.22
LINC00517-201ENST00000553396 CFAP74Q9C0B2 1584 aa16.42■□□□□ 0.22
LINC00517-201ENST00000553396 FANCAO15360 1455 aa16.42■□□□□ 0.22
LINC00517-201ENST00000553396 PHLDB1Q86UU1 1377 aa16.4■□□□□ 0.22
LINC00517-201ENST00000553396 FRMPD1Q5SYB0 1578 aa16.38■□□□□ 0.21
LINC00517-201ENST00000553396 RAPGEF3O95398 923 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms