RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 SHROOM2Q13796 1616 aa25.81■■□□□ 1.72
SHMT2-204ENST00000553324 PRG4Q92954 1404 aaPredicted RBP25.81■■□□□ 1.72
SHMT2-204ENST00000553324 RAPGEF2Q9Y4G8 1499 aa25.79■■□□□ 1.72
SHMT2-204ENST00000553324 ERCC6L2Q5T890 1561 aa25.73■■□□□ 1.71
SHMT2-204ENST00000553324 CSRNP3Q8WYN3 585 aa25.69■■□□□ 1.7
SHMT2-204ENST00000553324 EEA1Q15075 1411 aa25.65■■□□□ 1.7
SHMT2-204ENST00000553324 TRHP20396 242 aaPredicted RBP25.65■■□□□ 1.7
SHMT2-204ENST00000553324 CHIC1Q5VXU3 224 aa25.65■■□□□ 1.7
SHMT2-204ENST00000553324 PRXQ9BXM0 1461 aa25.63■■□□□ 1.69
SHMT2-204ENST00000553324 CARMIL2Q6F5E8 1435 aa25.63■■□□□ 1.69
SHMT2-204ENST00000553324 IQGAP2Q13576 1575 aa25.59■■□□□ 1.69
SHMT2-204ENST00000553324 NPM1P06748 294 aaKnown RBP eCLIP25.55■■□□□ 1.68
SHMT2-204ENST00000553324 PTPRGP23470 1445 aa25.54■■□□□ 1.68
SHMT2-204ENST00000553324 TNIKQ9UKE5 1360 aa25.54■■□□□ 1.68
SHMT2-204ENST00000553324 FAM9AQ8IZU1 332 aaPredicted RBP25.49■■□□□ 1.67
SHMT2-204ENST00000553324 UGGT2Q9NYU1 1516 aa25.48■■□□□ 1.67
SHMT2-204ENST00000553324 TTBK1Q5TCY1 1321 aaPredicted RBP25.44■■□□□ 1.66
SHMT2-204ENST00000553324 DISP1Q96F81 1524 aa25.44■■□□□ 1.66
SHMT2-204ENST00000553324 GOLGA3Q08378 1498 aa25.4■■□□□ 1.66
SHMT2-204ENST00000553324 CTTNBP2Q8WZ74 1663 aa25.36■■□□□ 1.65
SHMT2-204ENST00000553324 UACAQ9BZF9 1416 aa25.33■■□□□ 1.65
SHMT2-204ENST00000553324 KIAA0556O60303 1618 aa25.32■■□□□ 1.64
SHMT2-204ENST00000553324 ADCY10Q96PN6 1610 aa25.32■■□□□ 1.64
SHMT2-204ENST00000553324 UHRF1BP1LA0JNW5 1464 aa25.3■■□□□ 1.64
SHMT2-204ENST00000553324 MAPKBP1O60336 1514 aa25.27■■□□□ 1.64
SHMT2-204ENST00000553324 ABCC2Q92887 1545 aa25.26■■□□□ 1.63
SHMT2-204ENST00000553324 KIF21BO75037 1637 aa25.25■■□□□ 1.63
SHMT2-204ENST00000553324 FAM69CQ0P6D2 419 aa25.24■■□□□ 1.63
SHMT2-204ENST00000553324 UBTFP17480 764 aaKnown RBP25.23■■□□□ 1.63
SHMT2-204ENST00000553324 P3H3Q8IVL6 736 aa25.21■■□□□ 1.63
SHMT2-204ENST00000553324 ABCC10Q5T3U5 1492 aa25.21■■□□□ 1.63
SHMT2-204ENST00000553324 RANGAP1P46060 587 aaPredicted RBP25.16■■□□□ 1.62
SHMT2-204ENST00000553324 KDM5BQ9UGL1 1544 aa25.16■■□□□ 1.62
SHMT2-204ENST00000553324 PLB1Q6P1J6 1458 aa25.15■■□□□ 1.62
SHMT2-204ENST00000553324 EHMT2Q96KQ7 1210 aa25.13■■□□□ 1.61
SHMT2-204ENST00000553324 ASXL2Q76L83 1435 aa25.12■■□□□ 1.61
SHMT2-204ENST00000553324 SAMD9Q5K651 1589 aa25.1■■□□□ 1.61
SHMT2-204ENST00000553324 ABCA8O94911 1581 aa25.08■■□□□ 1.61
SHMT2-204ENST00000553324 DIP2BQ9P265 1576 aa25.05■■□□□ 1.6
SHMT2-204ENST00000553324 KIF13AQ9H1H9 1805 aa25.04■■□□□ 1.6
SHMT2-204ENST00000553324 EFCAB5A4FU69 1503 aa25.02■■□□□ 1.6
SHMT2-204ENST00000553324 FHOD3Q2V2M9 1422 aa25■■□□□ 1.59
SHMT2-204ENST00000553324 ZCCHC11Q5TAX3 1644 aaKnown RBP25■■□□□ 1.59
SHMT2-204ENST00000553324 WDR7Q9Y4E6 1490 aa24.96■■□□□ 1.59
SHMT2-204ENST00000553324 GLI2P10070 1586 aa24.96■■□□□ 1.59
SHMT2-204ENST00000553324 EPRSP07814 1512 aaKnown RBP24.96■■□□□ 1.59
SHMT2-204ENST00000553324 ATP10BO94823 1461 aa24.95■■□□□ 1.58
SHMT2-204ENST00000553324 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.94■■□□□ 1.58
SHMT2-204ENST00000553324 HNRNPUL2Q1KMD3 747 aaKnown RBP24.94■■□□□ 1.58
SHMT2-204ENST00000553324 ARID3CA6NKF2 412 aa24.93■■□□□ 1.58
SHMT2-204ENST00000553324 KCNH8Q96L42 1107 aa24.93■■□□□ 1.58
SHMT2-204ENST00000553324 RAPGEF6Q8TEU7 1601 aa24.9■■□□□ 1.58
SHMT2-204ENST00000553324 FMN1Q68DA7 1419 aa24.88■■□□□ 1.57
SHMT2-204ENST00000553324 ARHGAP35Q9NRY4 1499 aa24.87■■□□□ 1.57
SHMT2-204ENST00000553324 PLEKHD1A6NEE1 506 aa24.85■■□□□ 1.57
SHMT2-204ENST00000553324 NUP153P49790 1475 aaKnown RBP24.84■■□□□ 1.57
SHMT2-204ENST00000553324 CD109Q6YHK3 1445 aa24.81■■□□□ 1.56
SHMT2-204ENST00000553324 TEX14Q8IWB6 1497 aa24.81■■□□□ 1.56
SHMT2-204ENST00000553324 ATP1B4Q9UN42 357 aaPredicted RBP24.8■■□□□ 1.56
SHMT2-204ENST00000553324 TSPOAP1O95153 1857 aa24.79■■□□□ 1.56
SHMT2-204ENST00000553324 MAP3K4Q9Y6R4 1608 aa24.77■■□□□ 1.56
SHMT2-204ENST00000553324 CDK11AQ9UQ88 783 aaPredicted RBP24.75■■□□□ 1.55
SHMT2-204ENST00000553324 MAGI3Q5TCQ9 1506 aa24.73■■□□□ 1.55
SHMT2-204ENST00000553324 KDM6BO15054 1643 aa24.72■■□□□ 1.55
SHMT2-204ENST00000553324 CLIP1P30622 1438 aa24.72■■□□□ 1.55
SHMT2-204ENST00000553324 CFAP43Q8NDM7 1665 aa24.69■■□□□ 1.54
SHMT2-204ENST00000553324 PPRC1Q5VV67 1664 aaKnown RBP24.69■■□□□ 1.54
SHMT2-204ENST00000553324 PHLDB1Q86UU1 1377 aa24.66■■□□□ 1.54
SHMT2-204ENST00000553324 HECW1Q76N89 1606 aa24.65■■□□□ 1.54
SHMT2-204ENST00000553324 CASKIN1Q8WXD9 1431 aa24.63■■□□□ 1.53
SHMT2-204ENST00000553324 CDK13Q14004 1512 aaKnown RBP24.61■■□□□ 1.53
SHMT2-204ENST00000553324 ABCA9Q8IUA7 1624 aa24.61■■□□□ 1.53
SHMT2-204ENST00000553324 LOC105371045A0A1W2PR82 267 aa24.6■■□□□ 1.53
SHMT2-204ENST00000553324 COL17A1Q9UMD9 1497 aaPredicted RBP24.59■■□□□ 1.53
SHMT2-204ENST00000553324 CEP162Q5TB80 1403 aa24.55■■□□□ 1.52
SHMT2-204ENST00000553324 CCDC18Q5T9S5 1454 aa24.55■■□□□ 1.52
SHMT2-204ENST00000553324 NEO1Q92859 1461 aa24.54■■□□□ 1.52
SHMT2-204ENST00000553324 FYCO1Q9BQS8 1478 aa24.53■■□□□ 1.52
SHMT2-204ENST00000553324 ARAP3Q8WWN8 1544 aa24.52■■□□□ 1.52
SHMT2-204ENST00000553324 TROQ12816 1431 aaPredicted RBP24.52■■□□□ 1.52
SHMT2-204ENST00000553324 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.51■■□□□ 1.51
SHMT2-204ENST00000553324 AEBP2Q6ZN18 517 aaPredicted RBP24.5■■□□□ 1.51
SHMT2-204ENST00000553324 PCF11O94913 1555 aaKnown RBP24.47■■□□□ 1.51
SHMT2-204ENST00000553324 PLCH2O75038 1416 aa24.46■■□□□ 1.51
SHMT2-204ENST00000553324 EFCAB2Q5VUJ9 269 aa24.44■■□□□ 1.5
SHMT2-204ENST00000553324 FANCAO15360 1455 aa24.44■■□□□ 1.5
SHMT2-204ENST00000553324 RAPGEF3O95398 923 aa24.43■■□□□ 1.5
SHMT2-204ENST00000553324 AKNAQ7Z591 1439 aa24.43■■□□□ 1.5
SHMT2-204ENST00000553324 TTC37Q6PGP7 1564 aa24.4■■□□□ 1.5
SHMT2-204ENST00000553324 KIF14Q15058 1648 aa24.39■■□□□ 1.5
SHMT2-204ENST00000553324 DENND4BO75064 1496 aaPredicted RBP24.37■■□□□ 1.49
SHMT2-204ENST00000553324 CFAP74Q9C0B2 1584 aa24.37■■□□□ 1.49
SHMT2-204ENST00000553324 LRRIQ1Q96JM4 1722 aa24.35■■□□□ 1.49
SHMT2-204ENST00000553324 MTUS2Q5JR59 1369 aa24.33■■□□□ 1.49
SHMT2-204ENST00000553324 KDM4FA0A1W2PPD8 638 aa24.33■■□□□ 1.49
SHMT2-204ENST00000553324 SCAPERQ9BY12 1400 aa24.3■■□□□ 1.48
SHMT2-204ENST00000553324 ADGRL1O94910 1474 aa24.3■■□□□ 1.48
SHMT2-204ENST00000553324 VPS8Q8N3P4 1428 aa24.28■■□□□ 1.48
SHMT2-204ENST00000553324 ARHGAP5Q13017 1502 aa24.27■■□□□ 1.48
SHMT2-204ENST00000553324 MYO5CQ9NQX4 1742 aa24.27■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms