RNA–Protein interactions for RNA: ENST00000551845.5

PTCH1-225, Transcript of patched 1, humanhuman

TSL 5

Gene PTCH1, Length 809 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-225ENST00000551845 KIF13AQ9H1H9 1805 aa17.75■□□□□ 0.43
PTCH1-225ENST00000551845 NUP160Q12769 1436 aa17.72■□□□□ 0.43
PTCH1-225ENST00000551845 RUSC2Q8N2Y8 1516 aa17.72■□□□□ 0.43
PTCH1-225ENST00000551845 ADAMTS12P58397 1594 aa17.71■□□□□ 0.43
PTCH1-225ENST00000551845 CSRNP3Q8WYN3 585 aa17.7■□□□□ 0.42
PTCH1-225ENST00000551845 SHROOM2Q13796 1616 aa17.69■□□□□ 0.42
PTCH1-225ENST00000551845 FAM69CQ0P6D2 419 aa17.66■□□□□ 0.42
PTCH1-225ENST00000551845 JPH4Q96JJ6 628 aa17.66■□□□□ 0.42
PTCH1-225ENST00000551845 FAM9AQ8IZU1 332 aaPredicted RBP17.65■□□□□ 0.42
PTCH1-225ENST00000551845 NPM1P06748 294 aaKnown RBP eCLIP17.64■□□□□ 0.41
PTCH1-225ENST00000551845 PRG4Q92954 1404 aaPredicted RBP17.64■□□□□ 0.41
PTCH1-225ENST00000551845 EEA1Q15075 1411 aa17.6■□□□□ 0.41
PTCH1-225ENST00000551845 RAPGEF2Q9Y4G8 1499 aa17.6■□□□□ 0.41
PTCH1-225ENST00000551845 CUL7Q14999 1698 aa17.59■□□□□ 0.41
PTCH1-225ENST00000551845 ABCC10Q5T3U5 1492 aa17.59■□□□□ 0.41
PTCH1-225ENST00000551845 KDM4FA0A1W2PPD8 638 aa17.57■□□□□ 0.4
PTCH1-225ENST00000551845 ILDR1Q86SU0 546 aaPredicted RBP17.56■□□□□ 0.4
PTCH1-225ENST00000551845 KDM6BO15054 1643 aa17.56■□□□□ 0.4
PTCH1-225ENST00000551845 KIAA0586Q9BVV6 1533 aa17.56■□□□□ 0.4
PTCH1-225ENST00000551845 DIP2BQ9P265 1576 aa17.54■□□□□ 0.4
PTCH1-225ENST00000551845 PRXQ9BXM0 1461 aa17.53■□□□□ 0.4
PTCH1-225ENST00000551845 MAPKBP1O60336 1514 aa17.52■□□□□ 0.4
PTCH1-225ENST00000551845 TSPOAP1O95153 1857 aa17.51■□□□□ 0.39
PTCH1-225ENST00000551845 ADCY10Q96PN6 1610 aa17.47■□□□□ 0.39
PTCH1-225ENST00000551845 EHMT2Q96KQ7 1210 aa17.42■□□□□ 0.38
PTCH1-225ENST00000551845 CARMIL2Q6F5E8 1435 aa17.41■□□□□ 0.38
PTCH1-225ENST00000551845 UBTFP17480 764 aaKnown RBP17.41■□□□□ 0.38
PTCH1-225ENST00000551845 TTBK1Q5TCY1 1321 aaPredicted RBP17.39■□□□□ 0.37
PTCH1-225ENST00000551845 PTPRGP23470 1445 aa17.36■□□□□ 0.37
PTCH1-225ENST00000551845 IQGAP2Q13576 1575 aa17.36■□□□□ 0.37
PTCH1-225ENST00000551845 TNIKQ9UKE5 1360 aa17.35■□□□□ 0.37
PTCH1-225ENST00000551845 RANGAP1P46060 587 aaPredicted RBP17.34■□□□□ 0.37
PTCH1-225ENST00000551845 ADGRL1O94910 1474 aa17.32■□□□□ 0.36
PTCH1-225ENST00000551845 P3H3Q8IVL6 736 aa17.31■□□□□ 0.36
PTCH1-225ENST00000551845 UGGT2Q9NYU1 1516 aa17.31■□□□□ 0.36
PTCH1-225ENST00000551845 GOLGA3Q08378 1498 aa17.29■□□□□ 0.36
PTCH1-225ENST00000551845 DISP1Q96F81 1524 aa17.27■□□□□ 0.36
PTCH1-225ENST00000551845 KIF21BO75037 1637 aa17.27■□□□□ 0.36
PTCH1-225ENST00000551845 PPRC1Q5VV67 1664 aaKnown RBP17.26■□□□□ 0.35
PTCH1-225ENST00000551845 ASXL2Q76L83 1435 aa17.25■□□□□ 0.35
PTCH1-225ENST00000551845 ABCC2Q92887 1545 aa17.25■□□□□ 0.35
PTCH1-225ENST00000551845 PLB1Q6P1J6 1458 aa17.24■□□□□ 0.35
PTCH1-225ENST00000551845 HECW2Q9P2P5 1572 aa17.24■□□□□ 0.35
PTCH1-225ENST00000551845 GLI2P10070 1586 aa17.23■□□□□ 0.35
PTCH1-225ENST00000551845 UACAQ9BZF9 1416 aa17.2■□□□□ 0.34
PTCH1-225ENST00000551845 CTTNBP2Q8WZ74 1663 aa17.19■□□□□ 0.34
PTCH1-225ENST00000551845 KIAA0556O60303 1618 aa17.18■□□□□ 0.34
PTCH1-225ENST00000551845 COL17A1Q9UMD9 1497 aaPredicted RBP17.17■□□□□ 0.34
PTCH1-225ENST00000551845 TEX14Q8IWB6 1497 aa17.15■□□□□ 0.34
PTCH1-225ENST00000551845 UHRF1BP1LA0JNW5 1464 aa17.14■□□□□ 0.33
PTCH1-225ENST00000551845 LOC105371045A0A1W2PR82 267 aa17.14■□□□□ 0.33
PTCH1-225ENST00000551845 EPRSP07814 1512 aaKnown RBP17.14■□□□□ 0.33
PTCH1-225ENST00000551845 MAP3K4Q9Y6R4 1608 aa17.14■□□□□ 0.33
PTCH1-225ENST00000551845 FHOD3Q2V2M9 1422 aa17.09■□□□□ 0.33
PTCH1-225ENST00000551845 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.08■□□□□ 0.32
PTCH1-225ENST00000551845 HNRNPUL2Q1KMD3 747 aaKnown RBP17.08■□□□□ 0.32
PTCH1-225ENST00000551845 ZCCHC11Q5TAX3 1644 aaKnown RBP17.07■□□□□ 0.32
PTCH1-225ENST00000551845 KDM5BQ9UGL1 1544 aa17.07■□□□□ 0.32
PTCH1-225ENST00000551845 ARID3CA6NKF2 412 aa17.07■□□□□ 0.32
PTCH1-225ENST00000551845 ATP1B4Q9UN42 357 aaPredicted RBP17.06■□□□□ 0.32
PTCH1-225ENST00000551845 SAMD9Q5K651 1589 aa17.06■□□□□ 0.32
PTCH1-225ENST00000551845 EFCAB5A4FU69 1503 aa17.06■□□□□ 0.32
PTCH1-225ENST00000551845 FBXO41Q8TF61 875 aa17.04■□□□□ 0.32
PTCH1-225ENST00000551845 ARHGAP35Q9NRY4 1499 aa17.03■□□□□ 0.32
PTCH1-225ENST00000551845 KCNH8Q96L42 1107 aa17.01■□□□□ 0.31
PTCH1-225ENST00000551845 CLIP1P30622 1438 aa17.01■□□□□ 0.31
PTCH1-225ENST00000551845 FMN1Q68DA7 1419 aa17.01■□□□□ 0.31
PTCH1-225ENST00000551845 ABCA8O94911 1581 aa17.01■□□□□ 0.31
PTCH1-225ENST00000551845 WDR7Q9Y4E6 1490 aa16.99■□□□□ 0.31
PTCH1-225ENST00000551845 PLEKHD1A6NEE1 506 aa16.99■□□□□ 0.31
PTCH1-225ENST00000551845 ATP10BO94823 1461 aa16.98■□□□□ 0.31
PTCH1-225ENST00000551845 CD109Q6YHK3 1445 aa16.97■□□□□ 0.31
PTCH1-225ENST00000551845 CFAP43Q8NDM7 1665 aa16.95■□□□□ 0.3
PTCH1-225ENST00000551845 CDK11AQ9UQ88 783 aaPredicted RBP16.94■□□□□ 0.3
PTCH1-225ENST00000551845 MAGI3Q5TCQ9 1506 aa16.94■□□□□ 0.3
PTCH1-225ENST00000551845 NUP153P49790 1475 aaKnown RBP16.92■□□□□ 0.3
PTCH1-225ENST00000551845 CEP162Q5TB80 1403 aa16.91■□□□□ 0.3
PTCH1-225ENST00000551845 RAPGEF6Q8TEU7 1601 aa16.91■□□□□ 0.3
PTCH1-225ENST00000551845 CASKIN1Q8WXD9 1431 aa16.86■□□□□ 0.29
PTCH1-225ENST00000551845 PTPRMP28827 1452 aa16.85■□□□□ 0.29
PTCH1-225ENST00000551845 ADAMTSL3P82987 1691 aa16.81■□□□□ 0.28
PTCH1-225ENST00000551845 ARAP3Q8WWN8 1544 aa16.81■□□□□ 0.28
PTCH1-225ENST00000551845 ARID4BQ4LE39 1312 aaPredicted RBP16.79■□□□□ 0.28
PTCH1-225ENST00000551845 HECW1Q76N89 1606 aa16.78■□□□□ 0.28
PTCH1-225ENST00000551845 CDK13Q14004 1512 aaKnown RBP16.77■□□□□ 0.28
PTCH1-225ENST00000551845 PCF11O94913 1555 aaKnown RBP16.77■□□□□ 0.27
PTCH1-225ENST00000551845 RAPGEF3O95398 923 aa16.76■□□□□ 0.27
PTCH1-225ENST00000551845 FYCO1Q9BQS8 1478 aa16.75■□□□□ 0.27
PTCH1-225ENST00000551845 BCORL1Q5H9F3 1711 aa16.75■□□□□ 0.27
PTCH1-225ENST00000551845 PHLDB1Q86UU1 1377 aa16.75■□□□□ 0.27
PTCH1-225ENST00000551845 MADDQ8WXG6 1647 aa16.74■□□□□ 0.27
PTCH1-225ENST00000551845 CCDC18Q5T9S5 1454 aa16.74■□□□□ 0.27
PTCH1-225ENST00000551845 LMTK3Q96Q04 1460 aa16.74■□□□□ 0.27
PTCH1-225ENST00000551845 APLP2Q06481 763 aa16.73■□□□□ 0.27
PTCH1-225ENST00000551845 TROQ12816 1431 aaPredicted RBP16.72■□□□□ 0.27
PTCH1-225ENST00000551845 PLPPR3Q6T4P5 718 aa16.72■□□□□ 0.27
PTCH1-225ENST00000551845 VPS8Q8N3P4 1428 aa16.71■□□□□ 0.27
PTCH1-225ENST00000551845 ABCA9Q8IUA7 1624 aa16.7■□□□□ 0.26
PTCH1-225ENST00000551845 RIMS1Q86UR5 1692 aaKnown RBP16.69■□□□□ 0.26
PTCH1-225ENST00000551845 NEO1Q92859 1461 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms