RNA–Protein interactions for RNA: ENST00000550102.5

CHMP1A-208, Transcript of charged multivesicular body protein 1A, human

TSL 5 BASIC

Gene CHMP1A, Length 803 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP1A-208	ENST00000550102	KIAA0586	Q9BVV6	1533 aa		29.3	■■■□□ 2.28
CHMP1A-208	ENST00000550102	PRG4	Q92954	1404 aa	Predicted RBP	29.26	■■■□□ 2.27
CHMP1A-208	ENST00000550102	RAPGEF2	Q9Y4G8	1499 aa		29.23	■■■□□ 2.27
CHMP1A-208	ENST00000550102	JPH4	Q96JJ6	628 aa		29.21	■■■□□ 2.27
CHMP1A-208	ENST00000550102	IQGAP2	Q13576	1575 aa		29.2	■■■□□ 2.26
CHMP1A-208	ENST00000550102	CTTNBP2	Q8WZ74	1663 aa		29.15	■■■□□ 2.26
CHMP1A-208	ENST00000550102	PRX	Q9BXM0	1461 aa		29.07	■■■□□ 2.24
CHMP1A-208	ENST00000550102	EEA1	Q15075	1411 aa		29.03	■■■□□ 2.24
CHMP1A-208	ENST00000550102	CARMIL2	Q6F5E8	1435 aa		29	■■■□□ 2.23
CHMP1A-208	ENST00000550102	UGGT2	Q9NYU1	1516 aa		28.99	■■■□□ 2.23
CHMP1A-208	ENST00000550102	ADCY10	Q96PN6	1610 aa		28.95	■■■□□ 2.23
CHMP1A-208	ENST00000550102	DISP1	Q96F81	1524 aa		28.93	■■■□□ 2.22
CHMP1A-208	ENST00000550102	KIAA0556	O60303	1618 aa		28.92	■■■□□ 2.22
CHMP1A-208	ENST00000550102	TRH	P20396	242 aa	Predicted RBP	28.92	■■■□□ 2.22
CHMP1A-208	ENST00000550102	CSRNP3	Q8WYN3	585 aa		28.9	■■■□□ 2.22
CHMP1A-208	ENST00000550102	CHIC1	Q5VXU3	224 aa		28.89	■■■□□ 2.22
CHMP1A-208	ENST00000550102	TNIK	Q9UKE5	1360 aa		28.88	■■■□□ 2.21
CHMP1A-208	ENST00000550102	PTPRG	P23470	1445 aa		28.86	■■■□□ 2.21
CHMP1A-208	ENST00000550102	KIF21B	O75037	1637 aa		28.83	■■■□□ 2.21
CHMP1A-208	ENST00000550102	GOLGA3	Q08378	1498 aa		28.81	■■■□□ 2.2
CHMP1A-208	ENST00000550102	MAPKBP1	O60336	1514 aa		28.79	■■■□□ 2.2
CHMP1A-208	ENST00000550102	KIF13A	Q9H1H9	1805 aa		28.78	■■■□□ 2.2
CHMP1A-208	ENST00000550102	FAM9A	Q8IZU1	332 aa	Predicted RBP	28.74	■■■□□ 2.19
CHMP1A-208	ENST00000550102	TTBK1	Q5TCY1	1321 aa	Predicted RBP	28.73	■■■□□ 2.19
CHMP1A-208	ENST00000550102	UHRF1BP1L	A0JNW5	1464 aa		28.72	■■■□□ 2.19
CHMP1A-208	ENST00000550102	NPM1	P06748	294 aa	Known RBP eCLIP	28.72	■■■□□ 2.19
CHMP1A-208	ENST00000550102	ABCC2	Q92887	1545 aa		28.72	■■■□□ 2.19
CHMP1A-208	ENST00000550102	UACA	Q9BZF9	1416 aa		28.69	■■■□□ 2.18
CHMP1A-208	ENST00000550102	SAMD9	Q5K651	1589 aa		28.67	■■■□□ 2.18
CHMP1A-208	ENST00000550102	DIP2B	Q9P265	1576 aa		28.65	■■■□□ 2.18
CHMP1A-208	ENST00000550102	ABCC10	Q5T3U5	1492 aa		28.61	■■■□□ 2.17
CHMP1A-208	ENST00000550102	ZCCHC11	Q5TAX3	1644 aa	Known RBP	28.6	■■■□□ 2.17
CHMP1A-208	ENST00000550102	ABCA8	O94911	1581 aa		28.58	■■■□□ 2.17
CHMP1A-208	ENST00000550102	KDM5B	Q9UGL1	1544 aa		28.58	■■■□□ 2.17
CHMP1A-208	ENST00000550102	PLB1	Q6P1J6	1458 aa		28.57	■■■□□ 2.16
CHMP1A-208	ENST00000550102	EFCAB5	A4FU69	1503 aa		28.52	■■■□□ 2.16
CHMP1A-208	ENST00000550102	ASXL2	Q76L83	1435 aa		28.51	■■■□□ 2.15
CHMP1A-208	ENST00000550102	FAM69C	Q0P6D2	419 aa		28.46	■■■□□ 2.15
CHMP1A-208	ENST00000550102	TSPOAP1	O95153	1857 aa		28.44	■■■□□ 2.14
CHMP1A-208	ENST00000550102	P3H3	Q8IVL6	736 aa		28.44	■■■□□ 2.14
CHMP1A-208	ENST00000550102	RAPGEF6	Q8TEU7	1601 aa		28.43	■■■□□ 2.14
CHMP1A-208	ENST00000550102	GLI2	P10070	1586 aa		28.42	■■■□□ 2.14
CHMP1A-208	ENST00000550102	FHOD3	Q2V2M9	1422 aa		28.4	■■■□□ 2.14
CHMP1A-208	ENST00000550102	UBTF	P17480	764 aa	Known RBP	28.39	■■■□□ 2.14
CHMP1A-208	ENST00000550102	RANGAP1	P46060	587 aa	Predicted RBP	28.39	■■■□□ 2.14
CHMP1A-208	ENST00000550102	WDR7	Q9Y4E6	1490 aa		28.38	■■■□□ 2.13
CHMP1A-208	ENST00000550102	EHMT2	Q96KQ7	1210 aa		28.37	■■■□□ 2.13
CHMP1A-208	ENST00000550102	EPRS	P07814	1512 aa	Known RBP	28.36	■■■□□ 2.13
CHMP1A-208	ENST00000550102	MAP3K4	Q9Y6R4	1608 aa		28.33	■■■□□ 2.13
CHMP1A-208	ENST00000550102	PPRC1	Q5VV67	1664 aa	Known RBP	28.32	■■■□□ 2.12
CHMP1A-208	ENST00000550102	ATP10B	O94823	1461 aa		28.26	■■■□□ 2.11
CHMP1A-208	ENST00000550102	NUP153	P49790	1475 aa	Known RBP	28.26	■■■□□ 2.11
CHMP1A-208	ENST00000550102	ARHGAP35	Q9NRY4	1499 aa		28.25	■■■□□ 2.11
CHMP1A-208	ENST00000550102	CFAP43	Q8NDM7	1665 aa		28.25	■■■□□ 2.11
CHMP1A-208	ENST00000550102	KDM6B	O15054	1643 aa		28.25	■■■□□ 2.11
CHMP1A-208	ENST00000550102	ARID3C	A6NKF2	412 aa		28.19	■■■□□ 2.1
CHMP1A-208	ENST00000550102	FMN1	Q68DA7	1419 aa		28.18	■■■□□ 2.1
CHMP1A-208	ENST00000550102	TEX14	Q8IWB6	1497 aa		28.17	■■■□□ 2.1
CHMP1A-208	ENST00000550102	HECW1	Q76N89	1606 aa		28.17	■■■□□ 2.1
CHMP1A-208	ENST00000550102	ABCA9	Q8IUA7	1624 aa		28.12	■■■□□ 2.09
CHMP1A-208	ENST00000550102	KCNH8	Q96L42	1107 aa		28.08	■■■□□ 2.09
CHMP1A-208	ENST00000550102	MAGI3	Q5TCQ9	1506 aa		28.08	■■■□□ 2.08
CHMP1A-208	ENST00000550102	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	28.07	■■■□□ 2.08
CHMP1A-208	ENST00000550102	HNRNPUL2	Q1KMD3	747 aa	Known RBP	28.07	■■■□□ 2.08
CHMP1A-208	ENST00000550102	CD109	Q6YHK3	1445 aa		28.07	■■■□□ 2.08
CHMP1A-208	ENST00000550102	CDK13	Q14004	1512 aa	Known RBP	28.07	■■■□□ 2.08
CHMP1A-208	ENST00000550102	PCF11	O94913	1555 aa	Known RBP	28.03	■■■□□ 2.08
CHMP1A-208	ENST00000550102	LRRIQ1	Q96JM4	1722 aa		28.02	■■■□□ 2.08
CHMP1A-208	ENST00000550102	CLIP1	P30622	1438 aa		28.01	■■■□□ 2.08
CHMP1A-208	ENST00000550102	PLEKHD1	A6NEE1	506 aa		27.94	■■■□□ 2.06
CHMP1A-208	ENST00000550102	CASKIN1	Q8WXD9	1431 aa		27.92	■■■□□ 2.06
CHMP1A-208	ENST00000550102	TTC37	Q6PGP7	1564 aa		27.92	■■■□□ 2.06
CHMP1A-208	ENST00000550102	FYCO1	Q9BQS8	1478 aa		27.92	■■■□□ 2.06
CHMP1A-208	ENST00000550102	COL17A1	Q9UMD9	1497 aa	Predicted RBP	27.92	■■■□□ 2.06
CHMP1A-208	ENST00000550102	ATP1B4	Q9UN42	357 aa	Predicted RBP	27.91	■■■□□ 2.06
CHMP1A-208	ENST00000550102	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	27.9	■■■□□ 2.06
CHMP1A-208	ENST00000550102	CCDC18	Q5T9S5	1454 aa		27.89	■■■□□ 2.06
CHMP1A-208	ENST00000550102	CFAP74	Q9C0B2	1584 aa		27.88	■■■□□ 2.05
CHMP1A-208	ENST00000550102	CEP162	Q5TB80	1403 aa		27.86	■■■□□ 2.05
CHMP1A-208	ENST00000550102	KIF14	Q15058	1648 aa		27.86	■■■□□ 2.05
CHMP1A-208	ENST00000550102	NEO1	Q92859	1461 aa		27.85	■■■□□ 2.05
CHMP1A-208	ENST00000550102	ARAP3	Q8WWN8	1544 aa		27.84	■■■□□ 2.05
CHMP1A-208	ENST00000550102	MYO5C	Q9NQX4	1742 aa		27.83	■■■□□ 2.05
CHMP1A-208	ENST00000550102	CDK11A	Q9UQ88	783 aa	Predicted RBP	27.82	■■■□□ 2.04
CHMP1A-208	ENST00000550102	PHLDB1	Q86UU1	1377 aa		27.82	■■■□□ 2.04
CHMP1A-208	ENST00000550102	TRO	Q12816	1431 aa	Predicted RBP	27.8	■■■□□ 2.04
CHMP1A-208	ENST00000550102	AEBP2	Q6ZN18	517 aa	Predicted RBP	27.78	■■■□□ 2.04
CHMP1A-208	ENST00000550102	FANCA	O15360	1455 aa		27.76	■■■□□ 2.03
CHMP1A-208	ENST00000550102	FRMPD1	Q5SYB0	1578 aa		27.72	■■■□□ 2.03
CHMP1A-208	ENST00000550102	RICTOR	Q6R327	1708 aa		27.7	■■■□□ 2.03
CHMP1A-208	ENST00000550102	PLCH2	O75038	1416 aa		27.67	■■■□□ 2.02
CHMP1A-208	ENST00000550102	LOC105371045	A0A1W2PR82	267 aa		27.66	■■■□□ 2.02
CHMP1A-208	ENST00000550102	PREX2	Q70Z35	1606 aa		27.66	■■■□□ 2.02
CHMP1A-208	ENST00000550102	AKNA	Q7Z591	1439 aa		27.66	■■■□□ 2.02
CHMP1A-208	ENST00000550102	CDC42BPB	Q9Y5S2	1711 aa		27.63	■■■□□ 2.01
CHMP1A-208	ENST00000550102	DENND4B	O75064	1496 aa	Predicted RBP	27.62	■■■□□ 2.01
CHMP1A-208	ENST00000550102	ARHGAP5	Q13017	1502 aa		27.62	■■■□□ 2.01
CHMP1A-208	ENST00000550102	CDC42BPA	Q5VT25	1732 aa		27.61	■■■□□ 2.01
CHMP1A-208	ENST00000550102	ADGRL1	O94910	1474 aa		27.6	■■■□□ 2.01
CHMP1A-208	ENST00000550102	ZMYM4	Q5VZL5	1548 aa		27.58	■■■□□ 2.01

Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms