RNA–Protein interactions for RNA: ENST00000550020.6

TMEM116-209, Transcript of transmembrane protein 116, humanhuman

TSL 4

Gene TMEM116, Length 572 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM116-209ENST00000550020 CCNB3Q8WWL7 1395 aa13.28□□□□□ -0.28
TMEM116-209ENST00000550020 FMN1Q68DA7 1419 aa13.28□□□□□ -0.28
TMEM116-209ENST00000550020 FYCO1Q9BQS8 1478 aa13.27□□□□□ -0.29
TMEM116-209ENST00000550020 CTTNBP2Q8WZ74 1663 aa13.27□□□□□ -0.29
TMEM116-209ENST00000550020 MRC2Q9UBG0 1479 aa13.25□□□□□ -0.29
TMEM116-209ENST00000550020 LRRC9Q6ZRR7 1453 aa13.24□□□□□ -0.29
TMEM116-209ENST00000550020 CASKIN1Q8WXD9 1431 aa13.24□□□□□ -0.29
TMEM116-209ENST00000550020 TDRD9Q8NDG6 1382 aaKnown RBP13.22□□□□□ -0.29
TMEM116-209ENST00000550020 KIF21AQ7Z4S6 1674 aa13.22□□□□□ -0.29
TMEM116-209ENST00000550020 CFAP43Q8NDM7 1665 aa13.22□□□□□ -0.29
TMEM116-209ENST00000550020 TARBP1Q13395 1621 aaKnown RBP13.2□□□□□ -0.3
TMEM116-209ENST00000550020 PCF11O94913 1555 aaKnown RBP13.2□□□□□ -0.3
TMEM116-209ENST00000550020 ZNF316A6NFI3 1004 aaPredicted RBP13.19□□□□□ -0.3
TMEM116-209ENST00000550020 THOC2Q8NI27 1593 aaKnown RBP13.18□□□□□ -0.3
TMEM116-209ENST00000550020 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.18□□□□□ -0.3
TMEM116-209ENST00000550020 IFT140Q96RY7 1462 aa13.17□□□□□ -0.3
TMEM116-209ENST00000550020 FHOD3Q2V2M9 1422 aa13.17□□□□□ -0.3
TMEM116-209ENST00000550020 SAMD9Q5K651 1589 aa13.16□□□□□ -0.3
TMEM116-209ENST00000550020 DIEXFQ68CQ4 756 aaKnown RBP13.16□□□□□ -0.3
TMEM116-209ENST00000550020 GRIN2BQ13224 1484 aa13.16□□□□□ -0.3
TMEM116-209ENST00000550020 DHX57Q6P158 1386 aaKnown RBP13.15□□□□□ -0.3
TMEM116-209ENST00000550020 P3H3Q8IVL6 736 aa13.14□□□□□ -0.31
TMEM116-209ENST00000550020 ATP1B4Q9UN42 357 aaPredicted RBP13.14□□□□□ -0.31
TMEM116-209ENST00000550020 WDR62O43379 1518 aa13.13□□□□□ -0.31
TMEM116-209ENST00000550020 PBRM1Q86U86 1689 aa13.12□□□□□ -0.31
TMEM116-209ENST00000550020 ADAMTS12P58397 1594 aa13.11□□□□□ -0.31
TMEM116-209ENST00000550020 SNAPC4Q5SXM2 1469 aa13.1□□□□□ -0.31
TMEM116-209ENST00000550020 CCDC18Q5T9S5 1454 aa13.1□□□□□ -0.31
TMEM116-209ENST00000550020 SETD5Q9C0A6 1442 aa13.1□□□□□ -0.31
TMEM116-209ENST00000550020 MTUS2Q5JR59 1369 aa13.09□□□□□ -0.31
TMEM116-209ENST00000550020 PHLDB1Q86UU1 1377 aa13.09□□□□□ -0.31
TMEM116-209ENST00000550020 DNAJC5BQ9UF47 199 aa13.09□□□□□ -0.31
TMEM116-209ENST00000550020 IQGAP2Q13576 1575 aa13.08□□□□□ -0.32
TMEM116-209ENST00000550020 FAM50AQ14320 339 aaKnown RBP13.07□□□□□ -0.32
TMEM116-209ENST00000550020 EHBP1L1Q8N3D4 1523 aa13.07□□□□□ -0.32
TMEM116-209ENST00000550020 RAB3GAP2Q9H2M9 1393 aa13.06□□□□□ -0.32
TMEM116-209ENST00000550020 ERCC6Q03468 1493 aa13.05□□□□□ -0.32
TMEM116-209ENST00000550020 ITGAEP38570 1179 aa13.05□□□□□ -0.32
TMEM116-209ENST00000550020 HECW1Q76N89 1606 aa13.05□□□□□ -0.32
TMEM116-209ENST00000550020 CENPBP07199 599 aaPredicted RBP13.04□□□□□ -0.32
TMEM116-209ENST00000550020 TIMELESSQ9UNS1 1208 aa13.04□□□□□ -0.32
TMEM116-209ENST00000550020 FGD6Q6ZV73 1430 aa13.04□□□□□ -0.32
TMEM116-209ENST00000550020 UGGT2Q9NYU1 1516 aa13.03□□□□□ -0.32
TMEM116-209ENST00000550020 ACIN1Q9UKV3 1341 aaKnown RBP13.03□□□□□ -0.32
TMEM116-209ENST00000550020 KIAA0586Q9BVV6 1533 aa13.03□□□□□ -0.32
TMEM116-209ENST00000550020 SUPT6HQ7KZ85 1726 aaKnown RBP13.02□□□□□ -0.33
TMEM116-209ENST00000550020 MYOM3Q5VTT5 1437 aa13.01□□□□□ -0.33
TMEM116-209ENST00000550020 MAGI1Q96QZ7 1491 aaPredicted RBP13.01□□□□□ -0.33
TMEM116-209ENST00000550020 NCOA2Q15596 1464 aa12.99□□□□□ -0.33
TMEM116-209ENST00000550020 GRIN2AQ12879 1464 aa12.97□□□□□ -0.33
TMEM116-209ENST00000550020 ZNF608Q9ULD9 1512 aaPredicted RBP12.96□□□□□ -0.33
TMEM116-209ENST00000550020 EIF4G3O43432 1585 aaKnown RBP12.95□□□□□ -0.34
TMEM116-209ENST00000550020 CDK11AQ9UQ88 783 aaPredicted RBP12.95□□□□□ -0.34
TMEM116-209ENST00000550020 MIA2Q96PC5 1412 aa12.95□□□□□ -0.34
TMEM116-209ENST00000550020 ARHGEF11O15085 1522 aa12.94□□□□□ -0.34
TMEM116-209ENST00000550020 EPRSP07814 1512 aaKnown RBP12.94□□□□□ -0.34
TMEM116-209ENST00000550020 SYNJ2O15056 1496 aa12.94□□□□□ -0.34
TMEM116-209ENST00000550020 HFM1A2PYH4 1435 aa12.94□□□□□ -0.34
TMEM116-209ENST00000550020 TCOF1Q13428 1488 aaKnown RBP12.92□□□□□ -0.34
TMEM116-209ENST00000550020 MAPKBP1O60336 1514 aa12.92□□□□□ -0.34
TMEM116-209ENST00000550020 KIAA0556O60303 1618 aa12.91□□□□□ -0.34
TMEM116-209ENST00000550020 CARMIL2Q6F5E8 1435 aa12.91□□□□□ -0.34
TMEM116-209ENST00000550020 AKNAQ7Z591 1439 aa12.91□□□□□ -0.34
TMEM116-209ENST00000550020 CHMP7Q8WUX9 453 aaPredicted RBP12.91□□□□□ -0.34
TMEM116-209ENST00000550020 UACAQ9BZF9 1416 aa12.89□□□□□ -0.35
TMEM116-209ENST00000550020 PTPN23Q9H3S7 1636 aa12.89□□□□□ -0.35
TMEM116-209ENST00000550020 LRRIQ1Q96JM4 1722 aa12.88□□□□□ -0.35
TMEM116-209ENST00000550020 DISP1Q96F81 1524 aa12.88□□□□□ -0.35
TMEM116-209ENST00000550020 RAPGEF6Q8TEU7 1601 aa12.86□□□□□ -0.35
TMEM116-209ENST00000550020 NUP160Q12769 1436 aa12.85□□□□□ -0.35
TMEM116-209ENST00000550020 MAGI3Q5TCQ9 1506 aa12.84□□□□□ -0.35
TMEM116-209ENST00000550020 NAIPQ13075 1403 aa12.84□□□□□ -0.35
TMEM116-209ENST00000550020 MIER1Q8N108 512 aa12.82□□□□□ -0.36
TMEM116-209ENST00000550020 CDK13Q14004 1512 aaKnown RBP12.82□□□□□ -0.36
TMEM116-209ENST00000550020 ROCK1Q13464 1354 aa12.81□□□□□ -0.36
TMEM116-209ENST00000550020 TONSLQ96HA7 1378 aa12.81□□□□□ -0.36
TMEM116-209ENST00000550020 NUP153P49790 1475 aaKnown RBP12.81□□□□□ -0.36
TMEM116-209ENST00000550020 CEP170Q5SW79 1584 aa12.81□□□□□ -0.36
TMEM116-209ENST00000550020 PTPRKQ15262 1439 aa12.8□□□□□ -0.36
TMEM116-209ENST00000550020 GCC2Q8IWJ2 1684 aa12.8□□□□□ -0.36
TMEM116-209ENST00000550020 TROQ12816 1431 aaPredicted RBP12.79□□□□□ -0.36
TMEM116-209ENST00000550020 FBLN2P98095 1184 aa12.79□□□□□ -0.36
TMEM116-209ENST00000550020 NEUROD1Q13562 356 aa12.79□□□□□ -0.36
TMEM116-209ENST00000550020 JPH4Q96JJ6 628 aa12.79□□□□□ -0.36
TMEM116-209ENST00000550020 PPP1R15AO75807 674 aaPredicted RBP12.77□□□□□ -0.37
TMEM116-209ENST00000550020 SCAF1Q9H7N4 1312 aaKnown RBP12.77□□□□□ -0.37
TMEM116-209ENST00000550020 ITSN2Q9NZM3 1697 aa12.76□□□□□ -0.37
TMEM116-209ENST00000550020 SIN3AQ96ST3 1273 aa12.75□□□□□ -0.37
TMEM116-209ENST00000550020 DAPK1P53355 1430 aa12.74□□□□□ -0.37
TMEM116-209ENST00000550020 DNMT1P26358 1616 aaKnown RBP12.73□□□□□ -0.37
TMEM116-209ENST00000550020 ADCY10Q96PN6 1610 aa12.73□□□□□ -0.37
TMEM116-209ENST00000550020 PLEKHD1A6NEE1 506 aa12.72□□□□□ -0.37
TMEM116-209ENST00000550020 TRIM52Q96A61 297 aa12.72□□□□□ -0.37
TMEM116-209ENST00000550020 RRP7BPQ9NSQ0 103 aa12.72□□□□□ -0.37
TMEM116-209ENST00000550020 CFDP1Q9UEE9 299 aaPredicted RBP12.71□□□□□ -0.37
TMEM116-209ENST00000550020 PLB1Q6P1J6 1458 aa12.71□□□□□ -0.38
TMEM116-209ENST00000550020 ABCA8O94911 1581 aa12.7□□□□□ -0.38
TMEM116-209ENST00000550020 CHIC2Q9UKJ5 165 aa12.7□□□□□ -0.38
TMEM116-209ENST00000550020 ABCC5O15440 1437 aa12.7□□□□□ -0.38
TMEM116-209ENST00000550020 ARID3CA6NKF2 412 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms