RNA–Protein interactions for RNA: ENST00000549678.1

PTCH1-219, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 578 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-219ENST00000549678 CUL7Q14999 1698 aa12.33□□□□□ -0.44
PTCH1-219ENST00000549678 RUSC2Q8N2Y8 1516 aa12.32□□□□□ -0.44
PTCH1-219ENST00000549678 KIAA0586Q9BVV6 1533 aa12.31□□□□□ -0.44
PTCH1-219ENST00000549678 CARMIL1Q5VZK9 1371 aa12.28□□□□□ -0.44
PTCH1-219ENST00000549678 NPM1P06748 294 aaKnown RBP eCLIP12.23□□□□□ -0.45
PTCH1-219ENST00000549678 CARMIL2Q6F5E8 1435 aa12.2□□□□□ -0.46
PTCH1-219ENST00000549678 MAPKBP1O60336 1514 aa12.2□□□□□ -0.46
PTCH1-219ENST00000549678 PTPRGP23470 1445 aa12.18□□□□□ -0.46
PTCH1-219ENST00000549678 TNIKQ9UKE5 1360 aa12.18□□□□□ -0.46
PTCH1-219ENST00000549678 ABCC10Q5T3U5 1492 aa12.17□□□□□ -0.46
PTCH1-219ENST00000549678 RAPGEF2Q9Y4G8 1499 aa12.17□□□□□ -0.46
PTCH1-219ENST00000549678 IQGAP2Q13576 1575 aa12.17□□□□□ -0.46
PTCH1-219ENST00000549678 ADCY10Q96PN6 1610 aa12.16□□□□□ -0.46
PTCH1-219ENST00000549678 KIF13AQ9H1H9 1805 aa12.15□□□□□ -0.46
PTCH1-219ENST00000549678 FAM69CQ0P6D2 419 aa12.13□□□□□ -0.47
PTCH1-219ENST00000549678 UGGT2Q9NYU1 1516 aa12.12□□□□□ -0.47
PTCH1-219ENST00000549678 CTTNBP2Q8WZ74 1663 aa12.12□□□□□ -0.47
PTCH1-219ENST00000549678 DIP2BQ9P265 1576 aa12.11□□□□□ -0.47
PTCH1-219ENST00000549678 UHRF1BP1LA0JNW5 1464 aa12.11□□□□□ -0.47
PTCH1-219ENST00000549678 ABCC2Q92887 1545 aa12.11□□□□□ -0.47
PTCH1-219ENST00000549678 FAM9AQ8IZU1 332 aaPredicted RBP12.1□□□□□ -0.47
PTCH1-219ENST00000549678 DISP1Q96F81 1524 aa12.1□□□□□ -0.47
PTCH1-219ENST00000549678 EEA1Q15075 1411 aa12.1□□□□□ -0.47
PTCH1-219ENST00000549678 CHIC1Q5VXU3 224 aa12.09□□□□□ -0.47
PTCH1-219ENST00000549678 UACAQ9BZF9 1416 aa12.09□□□□□ -0.47
PTCH1-219ENST00000549678 PLB1Q6P1J6 1458 aa12.08□□□□□ -0.48
PTCH1-219ENST00000549678 PRXQ9BXM0 1461 aa12.07□□□□□ -0.48
PTCH1-219ENST00000549678 AEBP2Q6ZN18 517 aaPredicted RBP12.06□□□□□ -0.48
PTCH1-219ENST00000549678 CSRNP3Q8WYN3 585 aa12.06□□□□□ -0.48
PTCH1-219ENST00000549678 GOLGA3Q08378 1498 aa12.06□□□□□ -0.48
PTCH1-219ENST00000549678 TTBK1Q5TCY1 1321 aaPredicted RBP12.06□□□□□ -0.48
PTCH1-219ENST00000549678 KIAA0556O60303 1618 aa12.05□□□□□ -0.48
PTCH1-219ENST00000549678 KDM5BQ9UGL1 1544 aa12.04□□□□□ -0.48
PTCH1-219ENST00000549678 ASXL2Q76L83 1435 aa12.03□□□□□ -0.48
PTCH1-219ENST00000549678 GLI2P10070 1586 aa12.03□□□□□ -0.48
PTCH1-219ENST00000549678 EHMT2Q96KQ7 1210 aa11.99□□□□□ -0.49
PTCH1-219ENST00000549678 KDM6BO15054 1643 aa11.99□□□□□ -0.49
PTCH1-219ENST00000549678 KIF21BO75037 1637 aa11.99□□□□□ -0.49
PTCH1-219ENST00000549678 EPRSP07814 1512 aaKnown RBP11.97□□□□□ -0.49
PTCH1-219ENST00000549678 TSPOAP1O95153 1857 aa11.97□□□□□ -0.49
PTCH1-219ENST00000549678 ZCCHC11Q5TAX3 1644 aaKnown RBP11.96□□□□□ -0.5
PTCH1-219ENST00000549678 TEX14Q8IWB6 1497 aa11.95□□□□□ -0.5
PTCH1-219ENST00000549678 RANGAP1P46060 587 aaPredicted RBP11.95□□□□□ -0.5
PTCH1-219ENST00000549678 WDR7Q9Y4E6 1490 aa11.95□□□□□ -0.5
PTCH1-219ENST00000549678 ABCA8O94911 1581 aa11.94□□□□□ -0.5
PTCH1-219ENST00000549678 UBTFP17480 764 aaKnown RBP11.93□□□□□ -0.5
PTCH1-219ENST00000549678 MAP3K4Q9Y6R4 1608 aa11.92□□□□□ -0.5
PTCH1-219ENST00000549678 PPRC1Q5VV67 1664 aaKnown RBP11.91□□□□□ -0.5
PTCH1-219ENST00000549678 P3H3Q8IVL6 736 aa11.89□□□□□ -0.51
PTCH1-219ENST00000549678 SAMD9Q5K651 1589 aa11.88□□□□□ -0.51
PTCH1-219ENST00000549678 MAGI3Q5TCQ9 1506 aa11.88□□□□□ -0.51
PTCH1-219ENST00000549678 CD109Q6YHK3 1445 aa11.86□□□□□ -0.51
PTCH1-219ENST00000549678 CFAP43Q8NDM7 1665 aa11.86□□□□□ -0.51
PTCH1-219ENST00000549678 KDM4FA0A1W2PPD8 638 aa11.85□□□□□ -0.51
PTCH1-219ENST00000549678 EFCAB5A4FU69 1503 aa11.85□□□□□ -0.51
PTCH1-219ENST00000549678 ATP10BO94823 1461 aa11.84□□□□□ -0.51
PTCH1-219ENST00000549678 COL17A1Q9UMD9 1497 aaPredicted RBP11.84□□□□□ -0.51
PTCH1-219ENST00000549678 PHLDB1Q86UU1 1377 aa11.83□□□□□ -0.52
PTCH1-219ENST00000549678 KCNH8Q96L42 1107 aa11.83□□□□□ -0.52
PTCH1-219ENST00000549678 RAPGEF6Q8TEU7 1601 aa11.82□□□□□ -0.52
PTCH1-219ENST00000549678 FHOD3Q2V2M9 1422 aa11.81□□□□□ -0.52
PTCH1-219ENST00000549678 ARID3CA6NKF2 412 aa11.79□□□□□ -0.52
PTCH1-219ENST00000549678 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.79□□□□□ -0.52
PTCH1-219ENST00000549678 HNRNPUL2Q1KMD3 747 aaKnown RBP11.79□□□□□ -0.52
PTCH1-219ENST00000549678 NUP153P49790 1475 aaKnown RBP11.78□□□□□ -0.52
PTCH1-219ENST00000549678 ARAP3Q8WWN8 1544 aa11.78□□□□□ -0.52
PTCH1-219ENST00000549678 ABCA9Q8IUA7 1624 aa11.78□□□□□ -0.52
PTCH1-219ENST00000549678 ADGRL1O94910 1474 aa11.76□□□□□ -0.53
PTCH1-219ENST00000549678 ATP1B4Q9UN42 357 aaPredicted RBP11.76□□□□□ -0.53
PTCH1-219ENST00000549678 NEO1Q92859 1461 aa11.76□□□□□ -0.53
PTCH1-219ENST00000549678 PLEKHD1A6NEE1 506 aa11.75□□□□□ -0.53
PTCH1-219ENST00000549678 FMN1Q68DA7 1419 aa11.73□□□□□ -0.53
PTCH1-219ENST00000549678 ARHGAP35Q9NRY4 1499 aa11.73□□□□□ -0.53
PTCH1-219ENST00000549678 HECW1Q76N89 1606 aa11.72□□□□□ -0.53
PTCH1-219ENST00000549678 CLIP1P30622 1438 aa11.69□□□□□ -0.54
PTCH1-219ENST00000549678 CDK11AQ9UQ88 783 aaPredicted RBP11.68□□□□□ -0.54
PTCH1-219ENST00000549678 CFAP74Q9C0B2 1584 aa11.67□□□□□ -0.54
PTCH1-219ENST00000549678 FANCAO15360 1455 aa11.65□□□□□ -0.54
PTCH1-219ENST00000549678 DENND4BO75064 1496 aaPredicted RBP11.65□□□□□ -0.54
PTCH1-219ENST00000549678 RAPGEF3O95398 923 aa11.65□□□□□ -0.54
PTCH1-219ENST00000549678 AKNAQ7Z591 1439 aa11.65□□□□□ -0.54
PTCH1-219ENST00000549678 PCF11O94913 1555 aaKnown RBP11.65□□□□□ -0.54
PTCH1-219ENST00000549678 CDK13Q14004 1512 aaKnown RBP11.65□□□□□ -0.55
PTCH1-219ENST00000549678 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.65□□□□□ -0.55
PTCH1-219ENST00000549678 CEP162Q5TB80 1403 aa11.63□□□□□ -0.55
PTCH1-219ENST00000549678 PLCH2O75038 1416 aa11.62□□□□□ -0.55
PTCH1-219ENST00000549678 FRMPD1Q5SYB0 1578 aa11.62□□□□□ -0.55
PTCH1-219ENST00000549678 LRRIQ1Q96JM4 1722 aa11.61□□□□□ -0.55
PTCH1-219ENST00000549678 LOC105371045A0A1W2PR82 267 aa11.61□□□□□ -0.55
PTCH1-219ENST00000549678 CCDC18Q5T9S5 1454 aa11.61□□□□□ -0.55
PTCH1-219ENST00000549678 MAGI2Q86UL8 1455 aa11.61□□□□□ -0.55
PTCH1-219ENST00000549678 TTC37Q6PGP7 1564 aa11.61□□□□□ -0.55
PTCH1-219ENST00000549678 ZMYM4Q5VZL5 1548 aa11.6□□□□□ -0.55
PTCH1-219ENST00000549678 FYCO1Q9BQS8 1478 aa11.6□□□□□ -0.55
PTCH1-219ENST00000549678 ARHGEF40Q8TER5 1519 aa11.6□□□□□ -0.55
PTCH1-219ENST00000549678 TROQ12816 1431 aaPredicted RBP11.6□□□□□ -0.55
PTCH1-219ENST00000549678 CASKIN1Q8WXD9 1431 aa11.6□□□□□ -0.55
PTCH1-219ENST00000549678 EFCAB2Q5VUJ9 269 aa11.59□□□□□ -0.55
PTCH1-219ENST00000549678 RICTORQ6R327 1708 aa11.59□□□□□ -0.55
PTCH1-219ENST00000549678 KIF14Q15058 1648 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms