RNA–Protein interactions for RNA: ENST00000549354.6

LINC00661-204, long intergenic non-protein coding RNA 661, humanhuman

TSL 1 (best) BASIC

Gene LINC00661, Length 3,340 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00661-204ENST00000549354 IFT140Q96RY7 1462 aa16.78■□□□□ 0.28
LINC00661-204ENST00000549354 THOC2Q8NI27 1593 aaKnown RBP16.77■□□□□ 0.27
LINC00661-204ENST00000549354 DIEXFQ68CQ4 756 aaKnown RBP16.77■□□□□ 0.27
LINC00661-204ENST00000549354 GTF3C3Q9Y5Q9 886 aa16.74■□□□□ 0.27
LINC00661-204ENST00000549354 CTTNBP2Q8WZ74 1663 aa16.74■□□□□ 0.27
LINC00661-204ENST00000549354 ACIN1Q9UKV3 1341 aaKnown RBP16.74■□□□□ 0.27
LINC00661-204ENST00000549354 PBRM1Q86U86 1689 aa16.74■□□□□ 0.27
LINC00661-204ENST00000549354 PELP1Q8IZL8 1130 aaKnown RBP16.73■□□□□ 0.27
LINC00661-204ENST00000549354 ERCC6Q03468 1493 aa16.71■□□□□ 0.26
LINC00661-204ENST00000549354 EFCAB5A4FU69 1503 aa16.7■□□□□ 0.26
LINC00661-204ENST00000549354 GRIN2BQ13224 1484 aa16.69■□□□□ 0.26
LINC00661-204ENST00000549354 FHAD1B1AJZ9 1412 aa16.68■□□□□ 0.26
LINC00661-204ENST00000549354 ADAMTS12P58397 1594 aa16.67■□□□□ 0.26
LINC00661-204ENST00000549354 AQRO60306 1485 aaKnown RBP eCLIP16.67■□□□□ 0.26
LINC00661-204ENST00000549354 MAP3K1Q13233 1512 aa16.66■□□□□ 0.26
LINC00661-204ENST00000549354 ZNF608Q9ULD9 1512 aaPredicted RBP16.64■□□□□ 0.25
LINC00661-204ENST00000549354 ITGAEP38570 1179 aa16.63■□□□□ 0.25
LINC00661-204ENST00000549354 SAMD9Q5K651 1589 aa16.62■□□□□ 0.25
LINC00661-204ENST00000549354 APLP2Q06481 763 aa16.62■□□□□ 0.25
LINC00661-204ENST00000549354 EIF4G3O43432 1585 aaKnown RBP16.6■□□□□ 0.25
LINC00661-204ENST00000549354 CENPBP07199 599 aaPredicted RBP16.6■□□□□ 0.25
LINC00661-204ENST00000549354 TIAM1Q13009 1591 aa16.55■□□□□ 0.24
LINC00661-204ENST00000549354 MAGI1Q96QZ7 1491 aaPredicted RBP16.54■□□□□ 0.24
LINC00661-204ENST00000549354 CASKIN1Q8WXD9 1431 aa16.53■□□□□ 0.24
LINC00661-204ENST00000549354 FYCO1Q9BQS8 1478 aa16.53■□□□□ 0.24
LINC00661-204ENST00000549354 PCF11O94913 1555 aaKnown RBP16.53■□□□□ 0.24
LINC00661-204ENST00000549354 KANK4Q5T7N3 995 aaPredicted RBP16.53■□□□□ 0.24
LINC00661-204ENST00000549354 CFAP43Q8NDM7 1665 aa16.52■□□□□ 0.24
LINC00661-204ENST00000549354 FHOD3Q2V2M9 1422 aa16.52■□□□□ 0.24
LINC00661-204ENST00000549354 SNAPC4Q5SXM2 1469 aa16.52■□□□□ 0.24
LINC00661-204ENST00000549354 FMN1Q68DA7 1419 aa16.51■□□□□ 0.23
LINC00661-204ENST00000549354 IQGAP2Q13576 1575 aa16.51■□□□□ 0.23
LINC00661-204ENST00000549354 UGGT2Q9NYU1 1516 aa16.49■□□□□ 0.23
LINC00661-204ENST00000549354 GRIN2AQ12879 1464 aa16.48■□□□□ 0.23
LINC00661-204ENST00000549354 RRBP1Q9P2E9 1410 aaKnown RBP16.48■□□□□ 0.23
LINC00661-204ENST00000549354 KIAA0586Q9BVV6 1533 aa16.47■□□□□ 0.23
LINC00661-204ENST00000549354 LRRC9Q6ZRR7 1453 aa16.47■□□□□ 0.23
LINC00661-204ENST00000549354 SYNJ2O15056 1496 aa16.46■□□□□ 0.23
LINC00661-204ENST00000549354 ATP1B4Q9UN42 357 aaPredicted RBP16.45■□□□□ 0.22
LINC00661-204ENST00000549354 ZNF316A6NFI3 1004 aaPredicted RBP16.44■□□□□ 0.22
LINC00661-204ENST00000549354 P3H3Q8IVL6 736 aa16.44■□□□□ 0.22
LINC00661-204ENST00000549354 MIER1Q8N108 512 aa16.42■□□□□ 0.22
LINC00661-204ENST00000549354 NUP160Q12769 1436 aa16.39■□□□□ 0.21
LINC00661-204ENST00000549354 CEP170Q5SW79 1584 aa16.38■□□□□ 0.21
LINC00661-204ENST00000549354 LRRIQ1Q96JM4 1722 aa16.38■□□□□ 0.21
LINC00661-204ENST00000549354 DISP1Q96F81 1524 aa16.37■□□□□ 0.21
LINC00661-204ENST00000549354 KIAA0556O60303 1618 aa16.36■□□□□ 0.21
LINC00661-204ENST00000549354 CCNB3Q8WWL7 1395 aa16.35■□□□□ 0.21
LINC00661-204ENST00000549354 CCDC18Q5T9S5 1454 aa16.32■□□□□ 0.2
LINC00661-204ENST00000549354 CHMP7Q8WUX9 453 aaPredicted RBP16.32■□□□□ 0.2
LINC00661-204ENST00000549354 HECW1Q76N89 1606 aa16.32■□□□□ 0.2
LINC00661-204ENST00000549354 PHLDB1Q86UU1 1377 aa16.31■□□□□ 0.2
LINC00661-204ENST00000549354 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.3■□□□□ 0.2
LINC00661-204ENST00000549354 EHBP1L1Q8N3D4 1523 aa16.27■□□□□ 0.2
LINC00661-204ENST00000549354 ARHGEF11O15085 1522 aa16.26■□□□□ 0.19
LINC00661-204ENST00000549354 EPRSP07814 1512 aaKnown RBP16.26■□□□□ 0.19
LINC00661-204ENST00000549354 MAGI3Q5TCQ9 1506 aa16.23■□□□□ 0.19
LINC00661-204ENST00000549354 HIRIP3Q9BW71 556 aaPredicted RBP16.23■□□□□ 0.19
LINC00661-204ENST00000549354 SUPT6HQ7KZ85 1726 aaKnown RBP16.22■□□□□ 0.19
LINC00661-204ENST00000549354 MTUS2Q5JR59 1369 aa16.22■□□□□ 0.19
LINC00661-204ENST00000549354 RAPGEF6Q8TEU7 1601 aa16.22■□□□□ 0.19
LINC00661-204ENST00000549354 JPH4Q96JJ6 628 aa16.21■□□□□ 0.18
LINC00661-204ENST00000549354 CARMIL2Q6F5E8 1435 aa16.2■□□□□ 0.18
LINC00661-204ENST00000549354 NCOA2Q15596 1464 aa16.2■□□□□ 0.18
LINC00661-204ENST00000549354 BCANQ96GW7 911 aa16.2■□□□□ 0.18
LINC00661-204ENST00000549354 CHD1O14646 1710 aa16.19■□□□□ 0.18
LINC00661-204ENST00000549354 NUP153P49790 1475 aaKnown RBP16.19■□□□□ 0.18
LINC00661-204ENST00000549354 FGD6Q6ZV73 1430 aa16.19■□□□□ 0.18
LINC00661-204ENST00000549354 FBLN2P98095 1184 aa16.18■□□□□ 0.18
LINC00661-204ENST00000549354 MYOM3Q5VTT5 1437 aa16.17■□□□□ 0.18
LINC00661-204ENST00000549354 SHROOM2Q13796 1616 aa16.16■□□□□ 0.18
LINC00661-204ENST00000549354 CDK13Q14004 1512 aaKnown RBP16.16■□□□□ 0.18
LINC00661-204ENST00000549354 CLSPNQ9HAW4 1339 aa16.15■□□□□ 0.18
LINC00661-204ENST00000549354 ABCA8O94911 1581 aa16.13■□□□□ 0.17
LINC00661-204ENST00000549354 TCOF1Q13428 1488 aaKnown RBP16.13■□□□□ 0.17
LINC00661-204ENST00000549354 DHX57Q6P158 1386 aaKnown RBP16.12■□□□□ 0.17
LINC00661-204ENST00000549354 CNGB1Q14028 1251 aaPredicted RBP16.1■□□□□ 0.17
LINC00661-204ENST00000549354 PLB1Q6P1J6 1458 aa16.1■□□□□ 0.17
LINC00661-204ENST00000549354 MIA2Q96PC5 1412 aa16.09■□□□□ 0.17
LINC00661-204ENST00000549354 SETD5Q9C0A6 1442 aa16.09■□□□□ 0.17
LINC00661-204ENST00000549354 PTPN23Q9H3S7 1636 aa16.08■□□□□ 0.17
LINC00661-204ENST00000549354 PRG4Q92954 1404 aaPredicted RBP16.08■□□□□ 0.17
LINC00661-204ENST00000549354 KCNH8Q96L42 1107 aa16.08■□□□□ 0.17
LINC00661-204ENST00000549354 FAM50AQ14320 339 aaKnown RBP16.07■□□□□ 0.16
LINC00661-204ENST00000549354 ADCY10Q96PN6 1610 aa16.07■□□□□ 0.16
LINC00661-204ENST00000549354 CLASP1Q7Z460 1538 aa16.07■□□□□ 0.16
LINC00661-204ENST00000549354 RAB3GAP2Q9H2M9 1393 aa16.06■□□□□ 0.16
LINC00661-204ENST00000549354 TROQ12816 1431 aaPredicted RBP16.05■□□□□ 0.16
LINC00661-204ENST00000549354 CDK11AQ9UQ88 783 aaPredicted RBP16.04■□□□□ 0.16
LINC00661-204ENST00000549354 PTPRKQ15262 1439 aa16.03■□□□□ 0.16
LINC00661-204ENST00000549354 ARID3CA6NKF2 412 aa16.02■□□□□ 0.15
LINC00661-204ENST00000549354 HFM1A2PYH4 1435 aa16.01■□□□□ 0.15
LINC00661-204ENST00000549354 PTPRGP23470 1445 aa16.01■□□□□ 0.15
LINC00661-204ENST00000549354 ATP10BO94823 1461 aa16.01■□□□□ 0.15
LINC00661-204ENST00000549354 AKNAQ7Z591 1439 aa15.98■□□□□ 0.15
LINC00661-204ENST00000549354 MAPKBP1O60336 1514 aa15.96■□□□□ 0.15
LINC00661-204ENST00000549354 SIN3AQ96ST3 1273 aa15.96■□□□□ 0.14
LINC00661-204ENST00000549354 ITSN2Q9NZM3 1697 aa15.95■□□□□ 0.14
LINC00661-204ENST00000549354 UACAQ9BZF9 1416 aa15.95■□□□□ 0.14
LINC00661-204ENST00000549354 DDX10Q13206 875 aaKnown RBP15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms