RNA–Protein interactions for RNA: ENST00000549328.1

CHMP1A-207, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 1,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-207ENST00000549328 PRG4Q92954 1404 aaPredicted RBP32.07■■■□□ 2.72
CHMP1A-207ENST00000549328 RUSC2Q8N2Y8 1516 aa32.05■■■□□ 2.72
CHMP1A-207ENST00000549328 CARMIL1Q5VZK9 1371 aa32.04■■■□□ 2.72
CHMP1A-207ENST00000549328 KIAA0586Q9BVV6 1533 aa32.01■■■□□ 2.72
CHMP1A-207ENST00000549328 RAPGEF2Q9Y4G8 1499 aa31.78■■■□□ 2.68
CHMP1A-207ENST00000549328 IQGAP2Q13576 1575 aa31.71■■■□□ 2.67
CHMP1A-207ENST00000549328 CARMIL2Q6F5E8 1435 aa31.69■■■□□ 2.66
CHMP1A-207ENST00000549328 NPM1P06748 294 aaKnown RBP eCLIP31.66■■■□□ 2.66
CHMP1A-207ENST00000549328 PTPRGP23470 1445 aa31.64■■■□□ 2.66
CHMP1A-207ENST00000549328 TNIKQ9UKE5 1360 aa31.61■■■□□ 2.65
CHMP1A-207ENST00000549328 ADCY10Q96PN6 1610 aa31.6■■■□□ 2.65
CHMP1A-207ENST00000549328 UGGT2Q9NYU1 1516 aa31.55■■■□□ 2.64
CHMP1A-207ENST00000549328 PRXQ9BXM0 1461 aa31.55■■■□□ 2.64
CHMP1A-207ENST00000549328 MAPKBP1O60336 1514 aa31.54■■■□□ 2.64
CHMP1A-207ENST00000549328 DISP1Q96F81 1524 aa31.54■■■□□ 2.64
CHMP1A-207ENST00000549328 TTBK1Q5TCY1 1321 aaPredicted RBP31.49■■■□□ 2.63
CHMP1A-207ENST00000549328 KIF13AQ9H1H9 1805 aa31.48■■■□□ 2.63
CHMP1A-207ENST00000549328 ABCC10Q5T3U5 1492 aa31.47■■■□□ 2.63
CHMP1A-207ENST00000549328 CTTNBP2Q8WZ74 1663 aa31.44■■■□□ 2.62
CHMP1A-207ENST00000549328 FAM69CQ0P6D2 419 aa31.43■■■□□ 2.62
CHMP1A-207ENST00000549328 CSRNP3Q8WYN3 585 aa31.43■■■□□ 2.62
CHMP1A-207ENST00000549328 UHRF1BP1LA0JNW5 1464 aa31.41■■■□□ 2.62
CHMP1A-207ENST00000549328 UACAQ9BZF9 1416 aa31.41■■■□□ 2.62
CHMP1A-207ENST00000549328 ABCC2Q92887 1545 aa31.4■■■□□ 2.62
CHMP1A-207ENST00000549328 KIAA0556O60303 1618 aa31.4■■■□□ 2.62
CHMP1A-207ENST00000549328 EEA1Q15075 1411 aa31.37■■■□□ 2.61
CHMP1A-207ENST00000549328 DIP2BQ9P265 1576 aa31.36■■■□□ 2.61
CHMP1A-207ENST00000549328 GOLGA3Q08378 1498 aa31.35■■■□□ 2.61
CHMP1A-207ENST00000549328 PLB1Q6P1J6 1458 aa31.27■■■□□ 2.6
CHMP1A-207ENST00000549328 KDM5BQ9UGL1 1544 aa31.26■■■□□ 2.59
CHMP1A-207ENST00000549328 ASXL2Q76L83 1435 aa31.24■■■□□ 2.59
CHMP1A-207ENST00000549328 CHIC1Q5VXU3 224 aa31.15■■■□□ 2.58
CHMP1A-207ENST00000549328 FAM9AQ8IZU1 332 aaPredicted RBP31.14■■■□□ 2.58
CHMP1A-207ENST00000549328 GLI2P10070 1586 aa31.13■■■□□ 2.57
CHMP1A-207ENST00000549328 ZCCHC11Q5TAX3 1644 aaKnown RBP31.13■■■□□ 2.57
CHMP1A-207ENST00000549328 ABCA8O94911 1581 aa31.11■■■□□ 2.57
CHMP1A-207ENST00000549328 TSPOAP1O95153 1857 aa31.08■■■□□ 2.57
CHMP1A-207ENST00000549328 EPRSP07814 1512 aaKnown RBP31.06■■■□□ 2.56
CHMP1A-207ENST00000549328 P3H3Q8IVL6 736 aa31.05■■■□□ 2.56
CHMP1A-207ENST00000549328 SAMD9Q5K651 1589 aa31.04■■■□□ 2.56
CHMP1A-207ENST00000549328 KIF21BO75037 1637 aa31.02■■■□□ 2.56
CHMP1A-207ENST00000549328 WDR7Q9Y4E6 1490 aa31.01■■■□□ 2.55
CHMP1A-207ENST00000549328 KDM6BO15054 1643 aa30.99■■■□□ 2.55
CHMP1A-207ENST00000549328 PPRC1Q5VV67 1664 aaKnown RBP30.94■■■□□ 2.54
CHMP1A-207ENST00000549328 MAP3K4Q9Y6R4 1608 aa30.94■■■□□ 2.54
CHMP1A-207ENST00000549328 RANGAP1P46060 587 aaPredicted RBP30.88■■■□□ 2.53
CHMP1A-207ENST00000549328 AEBP2Q6ZN18 517 aaPredicted RBP30.88■■■□□ 2.53
CHMP1A-207ENST00000549328 ATP10BO94823 1461 aa30.88■■■□□ 2.53
CHMP1A-207ENST00000549328 TEX14Q8IWB6 1497 aa30.88■■■□□ 2.53
CHMP1A-207ENST00000549328 KCNH8Q96L42 1107 aa30.86■■■□□ 2.53
CHMP1A-207ENST00000549328 RAPGEF6Q8TEU7 1601 aa30.84■■■□□ 2.53
CHMP1A-207ENST00000549328 EFCAB5A4FU69 1503 aa30.83■■■□□ 2.53
CHMP1A-207ENST00000549328 FHOD3Q2V2M9 1422 aa30.82■■■□□ 2.52
CHMP1A-207ENST00000549328 UBTFP17480 764 aaKnown RBP30.81■■■□□ 2.52
CHMP1A-207ENST00000549328 ARID3CA6NKF2 412 aa30.8■■■□□ 2.52
CHMP1A-207ENST00000549328 CD109Q6YHK3 1445 aa30.8■■■□□ 2.52
CHMP1A-207ENST00000549328 CFAP43Q8NDM7 1665 aa30.78■■■□□ 2.52
CHMP1A-207ENST00000549328 MAGI3Q5TCQ9 1506 aa30.77■■■□□ 2.52
CHMP1A-207ENST00000549328 COL17A1Q9UMD9 1497 aaPredicted RBP30.75■■■□□ 2.51
CHMP1A-207ENST00000549328 NUP153P49790 1475 aaKnown RBP30.74■■■□□ 2.51
CHMP1A-207ENST00000549328 EHMT2Q96KQ7 1210 aa30.72■■■□□ 2.51
CHMP1A-207ENST00000549328 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.7■■■□□ 2.51
CHMP1A-207ENST00000549328 HNRNPUL2Q1KMD3 747 aaKnown RBP30.7■■■□□ 2.51
CHMP1A-207ENST00000549328 ABCA9Q8IUA7 1624 aa30.62■■■□□ 2.49
CHMP1A-207ENST00000549328 PLEKHD1A6NEE1 506 aa30.6■■■□□ 2.49
CHMP1A-207ENST00000549328 ARHGAP35Q9NRY4 1499 aa30.59■■■□□ 2.49
CHMP1A-207ENST00000549328 FMN1Q68DA7 1419 aa30.58■■■□□ 2.49
CHMP1A-207ENST00000549328 PHLDB1Q86UU1 1377 aa30.56■■■□□ 2.48
CHMP1A-207ENST00000549328 KDM4FA0A1W2PPD8 638 aa30.55■■■□□ 2.48
CHMP1A-207ENST00000549328 ARAP3Q8WWN8 1544 aa30.52■■■□□ 2.48
CHMP1A-207ENST00000549328 NEO1Q92859 1461 aa30.46■■■□□ 2.47
CHMP1A-207ENST00000549328 CDK13Q14004 1512 aaKnown RBP30.44■■■□□ 2.46
CHMP1A-207ENST00000549328 ATP1B4Q9UN42 357 aaPredicted RBP30.43■■■□□ 2.46
CHMP1A-207ENST00000549328 HECW1Q76N89 1606 aa30.43■■■□□ 2.46
CHMP1A-207ENST00000549328 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.38■■■□□ 2.45
CHMP1A-207ENST00000549328 CDK11AQ9UQ88 783 aaPredicted RBP30.38■■■□□ 2.45
CHMP1A-207ENST00000549328 ADGRL1O94910 1474 aa30.37■■■□□ 2.45
CHMP1A-207ENST00000549328 RAPGEF3O95398 923 aa30.32■■■□□ 2.44
CHMP1A-207ENST00000549328 TTC37Q6PGP7 1564 aa30.3■■■□□ 2.44
CHMP1A-207ENST00000549328 FANCAO15360 1455 aa30.3■■■□□ 2.44
CHMP1A-207ENST00000549328 AKNAQ7Z591 1439 aa30.28■■■□□ 2.44
CHMP1A-207ENST00000549328 CASKIN1Q8WXD9 1431 aa30.27■■■□□ 2.44
CHMP1A-207ENST00000549328 CFAP74Q9C0B2 1584 aa30.27■■■□□ 2.44
CHMP1A-207ENST00000549328 CLIP1P30622 1438 aa30.25■■■□□ 2.43
CHMP1A-207ENST00000549328 PLCH2O75038 1416 aa30.24■■■□□ 2.43
CHMP1A-207ENST00000549328 TROQ12816 1431 aaPredicted RBP30.24■■■□□ 2.43
CHMP1A-207ENST00000549328 DENND4BO75064 1496 aaPredicted RBP30.23■■■□□ 2.43
CHMP1A-207ENST00000549328 FRMPD1Q5SYB0 1578 aa30.21■■■□□ 2.43
CHMP1A-207ENST00000549328 CCDC18Q5T9S5 1454 aa30.2■■■□□ 2.43
CHMP1A-207ENST00000549328 LRRIQ1Q96JM4 1722 aa30.2■■■□□ 2.43
CHMP1A-207ENST00000549328 PCF11O94913 1555 aaKnown RBP30.2■■■□□ 2.42
CHMP1A-207ENST00000549328 KIF14Q15058 1648 aa30.17■■■□□ 2.42
CHMP1A-207ENST00000549328 EFCAB2Q5VUJ9 269 aa30.16■■■□□ 2.42
CHMP1A-207ENST00000549328 FYCO1Q9BQS8 1478 aa30.16■■■□□ 2.42
CHMP1A-207ENST00000549328 RICTORQ6R327 1708 aa30.15■■■□□ 2.42
CHMP1A-207ENST00000549328 MYO5CQ9NQX4 1742 aa30.13■■■□□ 2.41
CHMP1A-207ENST00000549328 SCAPERQ9BY12 1400 aa30.1■■■□□ 2.41
CHMP1A-207ENST00000549328 ZMYM4Q5VZL5 1548 aa30.07■■■□□ 2.4
CHMP1A-207ENST00000549328 MAGI2Q86UL8 1455 aa30.06■■■□□ 2.4
CHMP1A-207ENST00000549328 ARHGEF40Q8TER5 1519 aa30.05■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms