RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 P3H3Q8IVL6 736 aa27.66■■■□□ 2.02
PRPF40B-208ENST00000548436 PCF11O94913 1555 aaKnown RBP27.66■■■□□ 2.02
PRPF40B-208ENST00000548436 CCNB3Q8WWL7 1395 aa27.65■■■□□ 2.02
PRPF40B-208ENST00000548436 EFCAB5A4FU69 1503 aa27.63■■■□□ 2.01
PRPF40B-208ENST00000548436 GAPVD1Q14C86 1478 aa27.63■■■□□ 2.01
PRPF40B-208ENST00000548436 CFAP43Q8NDM7 1665 aa27.62■■■□□ 2.01
PRPF40B-208ENST00000548436 FHOD3Q2V2M9 1422 aa27.62■■■□□ 2.01
PRPF40B-208ENST00000548436 LRRC9Q6ZRR7 1453 aa27.62■■■□□ 2.01
PRPF40B-208ENST00000548436 DIEXFQ68CQ4 756 aaKnown RBP27.6■■■□□ 2.01
PRPF40B-208ENST00000548436 TARBP1Q13395 1621 aaKnown RBP27.59■■■□□ 2.01
PRPF40B-208ENST00000548436 DHX57Q6P158 1386 aaKnown RBP27.56■■■□□ 2
PRPF40B-208ENST00000548436 ZNF316A6NFI3 1004 aaPredicted RBP27.54■■■□□ 2
PRPF40B-208ENST00000548436 FYCO1Q9BQS8 1478 aa27.52■■■□□ 2
PRPF40B-208ENST00000548436 AQRO60306 1485 aaKnown RBP eCLIP27.5■■□□□ 1.99
PRPF40B-208ENST00000548436 CASKIN1Q8WXD9 1431 aa27.49■■□□□ 1.99
PRPF40B-208ENST00000548436 CLSPNQ9HAW4 1339 aa27.49■■□□□ 1.99
PRPF40B-208ENST00000548436 PHLDB1Q86UU1 1377 aa27.49■■□□□ 1.99
PRPF40B-208ENST00000548436 ATP1B4Q9UN42 357 aaPredicted RBP27.47■■□□□ 1.99
PRPF40B-208ENST00000548436 SAMD9Q5K651 1589 aa27.46■■□□□ 1.99
PRPF40B-208ENST00000548436 ERCC6Q03468 1493 aa27.45■■□□□ 1.99
PRPF40B-208ENST00000548436 ITGAEP38570 1179 aa27.45■■□□□ 1.99
PRPF40B-208ENST00000548436 PBRM1Q86U86 1689 aa27.44■■□□□ 1.98
PRPF40B-208ENST00000548436 MRC2Q9UBG0 1479 aa27.42■■□□□ 1.98
PRPF40B-208ENST00000548436 FMN1Q68DA7 1419 aa27.42■■□□□ 1.98
PRPF40B-208ENST00000548436 SNAPC4Q5SXM2 1469 aa27.4■■□□□ 1.98
PRPF40B-208ENST00000548436 LRRIQ1Q96JM4 1722 aa27.35■■□□□ 1.97
PRPF40B-208ENST00000548436 RAB3GAP2Q9H2M9 1393 aa27.32■■□□□ 1.96
PRPF40B-208ENST00000548436 FAM50AQ14320 339 aaKnown RBP27.29■■□□□ 1.96
PRPF40B-208ENST00000548436 ADAMTS12P58397 1594 aa27.29■■□□□ 1.96
PRPF40B-208ENST00000548436 GRIN2BQ13224 1484 aa27.26■■□□□ 1.95
PRPF40B-208ENST00000548436 SETD5Q9C0A6 1442 aa27.26■■□□□ 1.95
PRPF40B-208ENST00000548436 WDR62O43379 1518 aa27.24■■□□□ 1.95
PRPF40B-208ENST00000548436 THOC2Q8NI27 1593 aaKnown RBP27.21■■□□□ 1.95
PRPF40B-208ENST00000548436 IQGAP2Q13576 1575 aa27.2■■□□□ 1.95
PRPF40B-208ENST00000548436 IFT140Q96RY7 1462 aa27.2■■□□□ 1.94
PRPF40B-208ENST00000548436 ZNF608Q9ULD9 1512 aaPredicted RBP27.2■■□□□ 1.94
PRPF40B-208ENST00000548436 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.2■■□□□ 1.94
PRPF40B-208ENST00000548436 MAPKBP1O60336 1514 aa27.19■■□□□ 1.94
PRPF40B-208ENST00000548436 MTUS2Q5JR59 1369 aa27.19■■□□□ 1.94
PRPF40B-208ENST00000548436 FGD6Q6ZV73 1430 aa27.16■■□□□ 1.94
PRPF40B-208ENST00000548436 SCAF1Q9H7N4 1312 aaKnown RBP27.14■■□□□ 1.94
PRPF40B-208ENST00000548436 SUPT6HQ7KZ85 1726 aaKnown RBP27.1■■□□□ 1.93
PRPF40B-208ENST00000548436 NCOA2Q15596 1464 aa27.1■■□□□ 1.93
PRPF40B-208ENST00000548436 EHBP1L1Q8N3D4 1523 aa27.09■■□□□ 1.93
PRPF40B-208ENST00000548436 ACIN1Q9UKV3 1341 aaKnown RBP27.07■■□□□ 1.92
PRPF40B-208ENST00000548436 MAGI3Q5TCQ9 1506 aa27.07■■□□□ 1.92
PRPF40B-208ENST00000548436 NEUROD1Q13562 356 aa27.06■■□□□ 1.92
PRPF40B-208ENST00000548436 MIER1Q8N108 512 aa27.06■■□□□ 1.92
PRPF40B-208ENST00000548436 HECW1Q76N89 1606 aa27.06■■□□□ 1.92
PRPF40B-208ENST00000548436 CCDC18Q5T9S5 1454 aa27.05■■□□□ 1.92
PRPF40B-208ENST00000548436 EIF4G3O43432 1585 aaKnown RBP27.05■■□□□ 1.92
PRPF40B-208ENST00000548436 UGGT2Q9NYU1 1516 aa27.04■■□□□ 1.92
PRPF40B-208ENST00000548436 MYOM3Q5VTT5 1437 aa27.04■■□□□ 1.92
PRPF40B-208ENST00000548436 ARHGEF11O15085 1522 aa27.01■■□□□ 1.91
PRPF40B-208ENST00000548436 PTPRKQ15262 1439 aa26.99■■□□□ 1.91
PRPF40B-208ENST00000548436 EPRSP07814 1512 aaKnown RBP26.98■■□□□ 1.91
PRPF40B-208ENST00000548436 CENPBP07199 599 aaPredicted RBP26.97■■□□□ 1.91
PRPF40B-208ENST00000548436 KIAA0586Q9BVV6 1533 aa26.97■■□□□ 1.91
PRPF40B-208ENST00000548436 PTPN23Q9H3S7 1636 aa26.95■■□□□ 1.91
PRPF40B-208ENST00000548436 GRIN2AQ12879 1464 aa26.95■■□□□ 1.9
PRPF40B-208ENST00000548436 CDK13Q14004 1512 aaKnown RBP26.93■■□□□ 1.9
PRPF40B-208ENST00000548436 KIAA0556O60303 1618 aa26.93■■□□□ 1.9
PRPF40B-208ENST00000548436 SIN3AQ96ST3 1273 aa26.92■■□□□ 1.9
PRPF40B-208ENST00000548436 DISP1Q96F81 1524 aa26.92■■□□□ 1.9
PRPF40B-208ENST00000548436 HFM1A2PYH4 1435 aa26.91■■□□□ 1.9
PRPF40B-208ENST00000548436 MAGI1Q96QZ7 1491 aaPredicted RBP26.86■■□□□ 1.89
PRPF40B-208ENST00000548436 NAIPQ13075 1403 aa26.85■■□□□ 1.89
PRPF40B-208ENST00000548436 TCOF1Q13428 1488 aaKnown RBP26.84■■□□□ 1.89
PRPF40B-208ENST00000548436 ARID3CA6NKF2 412 aa26.83■■□□□ 1.89
PRPF40B-208ENST00000548436 YTHDC1Q96MU7 727 aaKnown RBP26.82■■□□□ 1.88
PRPF40B-208ENST00000548436 CEP170Q5SW79 1584 aa26.81■■□□□ 1.88
PRPF40B-208ENST00000548436 SYNJ2O15056 1496 aa26.8■■□□□ 1.88
PRPF40B-208ENST00000548436 UACAQ9BZF9 1416 aa26.79■■□□□ 1.88
PRPF40B-208ENST00000548436 RAPGEF6Q8TEU7 1601 aa26.78■■□□□ 1.88
PRPF40B-208ENST00000548436 TIMELESSQ9UNS1 1208 aa26.77■■□□□ 1.88
PRPF40B-208ENST00000548436 NUP153P49790 1475 aaKnown RBP26.77■■□□□ 1.88
PRPF40B-208ENST00000548436 CHMP7Q8WUX9 453 aaPredicted RBP26.76■■□□□ 1.87
PRPF40B-208ENST00000548436 MIA2Q96PC5 1412 aa26.75■■□□□ 1.87
PRPF40B-208ENST00000548436 GCC2Q8IWJ2 1684 aa26.73■■□□□ 1.87
PRPF40B-208ENST00000548436 GTF3C3Q9Y5Q9 886 aa26.71■■□□□ 1.87
PRPF40B-208ENST00000548436 RRP7BPQ9NSQ0 103 aa26.69■■□□□ 1.86
PRPF40B-208ENST00000548436 CHIC2Q9UKJ5 165 aa26.69■■□□□ 1.86
PRPF40B-208ENST00000548436 FBLN2P98095 1184 aa26.68■■□□□ 1.86
PRPF40B-208ENST00000548436 PPP1R15AO75807 674 aaPredicted RBP26.67■■□□□ 1.86
PRPF40B-208ENST00000548436 NUP160Q12769 1436 aa26.66■■□□□ 1.86
PRPF40B-208ENST00000548436 AKNAQ7Z591 1439 aa26.65■■□□□ 1.86
PRPF40B-208ENST00000548436 KDM6BO15054 1643 aa26.64■■□□□ 1.86
PRPF40B-208ENST00000548436 PLB1Q6P1J6 1458 aa26.62■■□□□ 1.85
PRPF40B-208ENST00000548436 JPH4Q96JJ6 628 aa26.59■■□□□ 1.85
PRPF40B-208ENST00000548436 TONSLQ96HA7 1378 aa26.59■■□□□ 1.85
PRPF40B-208ENST00000548436 CDK11AQ9UQ88 783 aaPredicted RBP26.58■■□□□ 1.85
PRPF40B-208ENST00000548436 CARMIL2Q6F5E8 1435 aa26.57■■□□□ 1.84
PRPF40B-208ENST00000548436 PRG4Q92954 1404 aaPredicted RBP26.56■■□□□ 1.84
PRPF40B-208ENST00000548436 DNMT1P26358 1616 aaKnown RBP26.56■■□□□ 1.84
PRPF40B-208ENST00000548436 DENND4BO75064 1496 aaPredicted RBP26.56■■□□□ 1.84
PRPF40B-208ENST00000548436 DAPK1P53355 1430 aa26.55■■□□□ 1.84
PRPF40B-208ENST00000548436 TROQ12816 1431 aaPredicted RBP26.54■■□□□ 1.84
PRPF40B-208ENST00000548436 ZNF644Q9H582 1327 aaPredicted RBP26.53■■□□□ 1.84
PRPF40B-208ENST00000548436 ABCC5O15440 1437 aa26.52■■□□□ 1.84
PRPF40B-208ENST00000548436 ADCY10Q96PN6 1610 aa26.5■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms