RNA–Protein interactions for RNA: ENST00000543721.1

LMO3-229, Transcript of LIM domain only 3, humanhuman

TSL 2

Gene LMO3, Length 3,626 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-229ENST00000543721 RRBP1Q9P2E9 1410 aaKnown RBP7.03□□□□□ -1.28
LMO3-229ENST00000543721 PRKCSHP14314 528 aaPredicted RBP7.02□□□□□ -1.29
LMO3-229ENST00000543721 CDK11AQ9UQ88 783 aaPredicted RBP7.02□□□□□ -1.29
LMO3-229ENST00000543721 BCANQ96GW7 911 aa7.01□□□□□ -1.29
LMO3-229ENST00000543721 DMRT2Q9Y5R5 561 aa7.01□□□□□ -1.29
LMO3-229ENST00000543721 HOXD11P31277 338 aaPredicted RBP6.99□□□□□ -1.29
LMO3-229ENST00000543721 ERICH3Q5RHP9 1530 aa6.99□□□□□ -1.29
LMO3-229ENST00000543721 ANP32CO43423 234 aa6.99□□□□□ -1.29
LMO3-229ENST00000543721 CCNB3Q8WWL7 1395 aa6.97□□□□□ -1.29
LMO3-229ENST00000543721 RAPGEF2Q9Y4G8 1499 aa6.97□□□□□ -1.29
LMO3-229ENST00000543721 SYNJ1O43426 1573 aa6.95□□□□□ -1.3
LMO3-229ENST00000543721 PPP1R15AO75807 674 aaPredicted RBP6.95□□□□□ -1.3
LMO3-229ENST00000543721 DDX10Q13206 875 aaKnown RBP6.95□□□□□ -1.3
LMO3-229ENST00000543721 PEG3Q9GZU2 1588 aa6.94□□□□□ -1.3
LMO3-229ENST00000543721 KCNH8Q96L42 1107 aa6.93□□□□□ -1.3
LMO3-229ENST00000543721 ARAP1Q96P48 1450 aa6.93□□□□□ -1.3
LMO3-229ENST00000543721 MAP3K1Q13233 1512 aa6.93□□□□□ -1.3
LMO3-229ENST00000543721 SETD5Q9C0A6 1442 aa6.93□□□□□ -1.3
LMO3-229ENST00000543721 PPP4R2Q9NY27 417 aa6.92□□□□□ -1.3
LMO3-229ENST00000543721 RAB3GAP2Q9H2M9 1393 aa6.92□□□□□ -1.3
LMO3-229ENST00000543721 PRXQ9BXM0 1461 aa6.92□□□□□ -1.3
LMO3-229ENST00000543721 DEKP35659 375 aaKnown RBP6.91□□□□□ -1.3
LMO3-229ENST00000543721 MAPKBP1O60336 1514 aa6.91□□□□□ -1.3
LMO3-229ENST00000543721 ITGAEP38570 1179 aa6.9□□□□□ -1.3
LMO3-229ENST00000543721 TOP2BQ02880 1626 aa6.9□□□□□ -1.3
LMO3-229ENST00000543721 KANK4Q5T7N3 995 aaPredicted RBP6.9□□□□□ -1.31
LMO3-229ENST00000543721 TRIM52Q96A61 297 aa6.9□□□□□ -1.31
LMO3-229ENST00000543721 FOXD4L1Q9NU39 408 aa6.9□□□□□ -1.31
LMO3-229ENST00000543721 WDR97A6NE52 1622 aa6.89□□□□□ -1.31
LMO3-229ENST00000543721 BIVM-ERCC5R4GMW8 1640 aa6.87□□□□□ -1.31
LMO3-229ENST00000543721 NOP58Q9Y2X3 529 aaKnown RBP6.87□□□□□ -1.31
LMO3-229ENST00000543721 SLC4A2P04920 1241 aa6.87□□□□□ -1.31
LMO3-229ENST00000543721 RTL5Q5HYW3 569 aaPredicted RBP6.87□□□□□ -1.31
LMO3-229ENST00000543721 RTN4Q9NQC3 1192 aaKnown RBP6.87□□□□□ -1.31
LMO3-229ENST00000543721 RANGAP1P46060 587 aaPredicted RBP6.86□□□□□ -1.31
LMO3-229ENST00000543721 HNRNPUQ00839 825 aaKnown RBP eCLIP6.86□□□□□ -1.31
LMO3-229ENST00000543721 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.85□□□□□ -1.31
LMO3-229ENST00000543721 KIF27Q86VH2 1401 aa6.85□□□□□ -1.31
LMO3-229ENST00000543721 TONSLQ96HA7 1378 aa6.84□□□□□ -1.31
LMO3-229ENST00000543721 TIAM1Q13009 1591 aa6.84□□□□□ -1.31
LMO3-229ENST00000543721 ANP32AP39687 249 aaKnown RBP6.83□□□□□ -1.32
LMO3-229ENST00000543721 ARHGAP35Q9NRY4 1499 aa6.83□□□□□ -1.32
LMO3-229ENST00000543721 FHAD1B1AJZ9 1412 aa6.83□□□□□ -1.32
LMO3-229ENST00000543721 SIN3AQ96ST3 1273 aa6.82□□□□□ -1.32
LMO3-229ENST00000543721 LRRC9Q6ZRR7 1453 aa6.81□□□□□ -1.32
LMO3-229ENST00000543721 UNC13AQ9UPW8 1703 aa6.81□□□□□ -1.32
LMO3-229ENST00000543721 IPO9Q96P70 1041 aaKnown RBP6.8□□□□□ -1.32
LMO3-229ENST00000543721 USP35Q9P2H5 1018 aa6.8□□□□□ -1.32
LMO3-229ENST00000543721 ZBTB47Q9UFB7 747 aaPredicted RBP6.8□□□□□ -1.32
LMO3-229ENST00000543721 ATAD2BQ9ULI0 1458 aa6.8□□□□□ -1.32
LMO3-229ENST00000543721 ZBED9Q6R2W3 1325 aa6.8□□□□□ -1.32
LMO3-229ENST00000543721 FAM50AQ14320 339 aaKnown RBP6.79□□□□□ -1.32
LMO3-229ENST00000543721 CFAP43Q8NDM7 1665 aa6.77□□□□□ -1.33
LMO3-229ENST00000543721 UACAQ9BZF9 1416 aa6.77□□□□□ -1.33
LMO3-229ENST00000543721 IRX6P78412 446 aaPredicted RBP6.77□□□□□ -1.33
LMO3-229ENST00000543721 NBR1Q14596 966 aa6.77□□□□□ -1.33
LMO3-229ENST00000543721 PHLDB1Q86UU1 1377 aa6.76□□□□□ -1.33
LMO3-229ENST00000543721 NCOA2Q15596 1464 aa6.76□□□□□ -1.33
LMO3-229ENST00000543721 CNTLNQ9NXG0 1405 aa6.76□□□□□ -1.33
LMO3-229ENST00000543721 PPM1GO15355 546 aaPredicted RBP6.75□□□□□ -1.33
LMO3-229ENST00000543721 B4GALNT3Q6L9W6 998 aa6.75□□□□□ -1.33
LMO3-229ENST00000543721 EIF4G2P78344 907 aaKnown RBP eCLIP6.75□□□□□ -1.33
LMO3-229ENST00000543721 WASHC2AQ641Q2 1341 aa6.75□□□□□ -1.33
LMO3-229ENST00000543721 C11orf95C9JLR9 678 aaPredicted RBP6.74□□□□□ -1.33
LMO3-229ENST00000543721 HIRIP3Q9BW71 556 aaPredicted RBP6.74□□□□□ -1.33
LMO3-229ENST00000543721 SMG6Q86US8 1419 aaKnown RBP6.74□□□□□ -1.33
LMO3-229ENST00000543721 ANO8Q9HCE9 1232 aaPredicted RBP6.74□□□□□ -1.33
LMO3-229ENST00000543721 HFM1A2PYH4 1435 aa6.74□□□□□ -1.33
LMO3-229ENST00000543721 CCDC18Q5T9S5 1454 aa6.74□□□□□ -1.33
LMO3-229ENST00000543721 CCDC136Q96JN2 1154 aa6.74□□□□□ -1.33
LMO3-229ENST00000543721 AQRO60306 1485 aaKnown RBP eCLIP6.73□□□□□ -1.33
LMO3-229ENST00000543721 PAK3O75914 559 aaPredicted RBP6.73□□□□□ -1.33
LMO3-229ENST00000543721 BICRAQ9NZM4 1560 aa6.73□□□□□ -1.33
LMO3-229ENST00000543721 FYCO1Q9BQS8 1478 aa6.73□□□□□ -1.33
LMO3-229ENST00000543721 CUX1P39880 1505 aa6.72□□□□□ -1.33
LMO3-229ENST00000543721 NCAPD3P42695 1498 aa6.72□□□□□ -1.33
LMO3-229ENST00000543721 RNF123Q5XPI4 1314 aa6.72□□□□□ -1.33
LMO3-229ENST00000543721 PRKRIP1Q9H875 184 aaPredicted RBP6.72□□□□□ -1.33
LMO3-229ENST00000543721 MRS2Q9HD23 443 aa6.72□□□□□ -1.33
LMO3-229ENST00000543721 UBE2Q2Q8WVN8 375 aa6.72□□□□□ -1.33
LMO3-229ENST00000543721 TCERG1O14776 1098 aaKnown RBP6.71□□□□□ -1.33
LMO3-229ENST00000543721 FMN1Q68DA7 1419 aa6.71□□□□□ -1.33
LMO3-229ENST00000543721 HSPA5P11021 654 aaKnown RBP6.71□□□□□ -1.34
LMO3-229ENST00000543721 EFCAB5A4FU69 1503 aa6.71□□□□□ -1.34
LMO3-229ENST00000543721 NUDCQ9Y266 331 aa6.71□□□□□ -1.34
LMO3-229ENST00000543721 WASHC2CQ9Y4E1 1318 aa6.7□□□□□ -1.34
LMO3-229ENST00000543721 FGD6Q6ZV73 1430 aa6.7□□□□□ -1.34
LMO3-229ENST00000543721 PTPN23Q9H3S7 1636 aa6.7□□□□□ -1.34
LMO3-229ENST00000543721 FAM9BQ8IZU0 186 aa6.7□□□□□ -1.34
LMO3-229ENST00000543721 DDRGK1Q96HY6 314 aa6.7□□□□□ -1.34
LMO3-229ENST00000543721 SALL2Q9Y467 1007 aaPredicted RBP6.7□□□□□ -1.34
LMO3-229ENST00000543721 CASKIN1Q8WXD9 1431 aa6.7□□□□□ -1.34
LMO3-229ENST00000543721 MS4A1P11836 297 aa6.7□□□□□ -1.34
LMO3-229ENST00000543721 IGF1RP08069 1367 aa6.7□□□□□ -1.34
LMO3-229ENST00000543721 CARMIL1Q5VZK9 1371 aa6.7□□□□□ -1.34
LMO3-229ENST00000543721 NCOA1Q15788 1441 aa6.69□□□□□ -1.34
LMO3-229ENST00000543721 CCDC7Q96M83 1385 aa6.69□□□□□ -1.34
LMO3-229ENST00000543721 PCF11O94913 1555 aaKnown RBP6.69□□□□□ -1.34
LMO3-229ENST00000543721 FGD5Q6ZNL6 1462 aa6.68□□□□□ -1.34
LMO3-229ENST00000543721 HMGXB3Q12766 1538 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms