RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	JPH4	Q96JJ6	628 aa		16.46	■□□□□ 0.23
CPSF7-221	ENST00000543545	KIF21B	O75037	1637 aa		16.43	■□□□□ 0.22
CPSF7-221	ENST00000543545	KIAA0586	Q9BVV6	1533 aa		16.43	■□□□□ 0.22
CPSF7-221	ENST00000543545	CEP170	Q5SW79	1584 aa		16.43	■□□□□ 0.22
CPSF7-221	ENST00000543545	DNAJC5	Q9H3Z4	198 aa		16.38	■□□□□ 0.21
CPSF7-221	ENST00000543545	TNIK	Q9UKE5	1360 aa		16.36	■□□□□ 0.21
CPSF7-221	ENST00000543545	CLASP1	Q7Z460	1538 aa		16.35	■□□□□ 0.21
CPSF7-221	ENST00000543545	TTBK1	Q5TCY1	1321 aa	Predicted RBP	16.35	■□□□□ 0.21
CPSF7-221	ENST00000543545	PRG4	Q92954	1404 aa	Predicted RBP	16.35	■□□□□ 0.21
CPSF7-221	ENST00000543545	P3H3	Q8IVL6	736 aa		16.34	■□□□□ 0.21
CPSF7-221	ENST00000543545	IQGAP2	Q13576	1575 aa		16.32	■□□□□ 0.2
CPSF7-221	ENST00000543545	CARMIL2	Q6F5E8	1435 aa		16.3	■□□□□ 0.2
CPSF7-221	ENST00000543545	UGGT2	Q9NYU1	1516 aa		16.24	■□□□□ 0.19
CPSF7-221	ENST00000543545	CYB5RL	Q6IPT4	315 aa		16.24	■□□□□ 0.19
CPSF7-221	ENST00000543545	CLIP1	P30622	1438 aa		16.23	■□□□□ 0.19
CPSF7-221	ENST00000543545	ARHGEF11	O15085	1522 aa		16.23	■□□□□ 0.19
CPSF7-221	ENST00000543545	PTPRG	P23470	1445 aa		16.22	■□□□□ 0.19
CPSF7-221	ENST00000543545	CTTNBP2	Q8WZ74	1663 aa		16.22	■□□□□ 0.19
CPSF7-221	ENST00000543545	DISP1	Q96F81	1524 aa		16.21	■□□□□ 0.19
CPSF7-221	ENST00000543545	SHROOM2	Q13796	1616 aa		16.21	■□□□□ 0.19
CPSF7-221	ENST00000543545	CEP162	Q5TB80	1403 aa		16.2	■□□□□ 0.18
CPSF7-221	ENST00000543545	ERCC6L2	Q5T890	1561 aa		16.2	■□□□□ 0.18
CPSF7-221	ENST00000543545	FHOD3	Q2V2M9	1422 aa		16.18	■□□□□ 0.18
CPSF7-221	ENST00000543545	ATP1B4	Q9UN42	357 aa	Predicted RBP	16.16	■□□□□ 0.18
CPSF7-221	ENST00000543545	ARHGAP35	Q9NRY4	1499 aa		16.16	■□□□□ 0.18
CPSF7-221	ENST00000543545	RIMBP3C	A6NJZ7	1639 aa		16.15	■□□□□ 0.18
CPSF7-221	ENST00000543545	RIMBP3B	A6NNM3	1639 aa		16.15	■□□□□ 0.18
CPSF7-221	ENST00000543545	KIAA0556	O60303	1618 aa		16.15	■□□□□ 0.18
CPSF7-221	ENST00000543545	RIMBP3	Q9UFD9	1639 aa		16.15	■□□□□ 0.18
CPSF7-221	ENST00000543545	EFCAB5	A4FU69	1503 aa		16.14	■□□□□ 0.18
CPSF7-221	ENST00000543545	ARAP1	Q96P48	1450 aa		16.13	■□□□□ 0.17
CPSF7-221	ENST00000543545	SAMD9	Q5K651	1589 aa		16.1	■□□□□ 0.17
CPSF7-221	ENST00000543545	ARID3C	A6NKF2	412 aa		16.09	■□□□□ 0.17
CPSF7-221	ENST00000543545	NPM1	P06748	294 aa	Known RBP eCLIP	16.09	■□□□□ 0.17
CPSF7-221	ENST00000543545	FMN1	Q68DA7	1419 aa		16.08	■□□□□ 0.16
CPSF7-221	ENST00000543545	UACA	Q9BZF9	1416 aa		16.08	■□□□□ 0.16
CPSF7-221	ENST00000543545	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	16.07	■□□□□ 0.16
CPSF7-221	ENST00000543545	HNRNPUL2	Q1KMD3	747 aa	Known RBP	16.07	■□□□□ 0.16
CPSF7-221	ENST00000543545	PLB1	Q6P1J6	1458 aa		16.05	■□□□□ 0.16
CPSF7-221	ENST00000543545	APLP2	Q06481	763 aa		15.98	■□□□□ 0.15
CPSF7-221	ENST00000543545	UHRF1BP1L	A0JNW5	1464 aa		15.97	■□□□□ 0.15
CPSF7-221	ENST00000543545	VPS8	Q8N3P4	1428 aa		15.97	■□□□□ 0.15
CPSF7-221	ENST00000543545	CASKIN1	Q8WXD9	1431 aa		15.97	■□□□□ 0.15
CPSF7-221	ENST00000543545	ABCC2	Q92887	1545 aa		15.96	■□□□□ 0.15
CPSF7-221	ENST00000543545	ABCA8	O94911	1581 aa		15.96	■□□□□ 0.14
CPSF7-221	ENST00000543545	CDK11A	Q9UQ88	783 aa	Predicted RBP	15.94	■□□□□ 0.14
CPSF7-221	ENST00000543545	PLEKHD1	A6NEE1	506 aa		15.93	■□□□□ 0.14
CPSF7-221	ENST00000543545	RAPGEF6	Q8TEU7	1601 aa		15.93	■□□□□ 0.14
CPSF7-221	ENST00000543545	NUP153	P49790	1475 aa	Known RBP	15.92	■□□□□ 0.14
CPSF7-221	ENST00000543545	ATP10B	O94823	1461 aa		15.91	■□□□□ 0.14
CPSF7-221	ENST00000543545	ADCY10	Q96PN6	1610 aa		15.91	■□□□□ 0.14
CPSF7-221	ENST00000543545	FYCO1	Q9BQS8	1478 aa		15.91	■□□□□ 0.14
CPSF7-221	ENST00000543545	KCNH8	Q96L42	1107 aa		15.9	■□□□□ 0.14
CPSF7-221	ENST00000543545	KDM5B	Q9UGL1	1544 aa		15.89	■□□□□ 0.13
CPSF7-221	ENST00000543545	PCF11	O94913	1555 aa	Known RBP	15.88	■□□□□ 0.13
CPSF7-221	ENST00000543545	EPRS	P07814	1512 aa	Known RBP	15.88	■□□□□ 0.13
CPSF7-221	ENST00000543545	HECW1	Q76N89	1606 aa		15.87	■□□□□ 0.13
CPSF7-221	ENST00000543545	TRH	P20396	242 aa	Predicted RBP	15.86	■□□□□ 0.13
CPSF7-221	ENST00000543545	ASXL2	Q76L83	1435 aa		15.85	■□□□□ 0.13
CPSF7-221	ENST00000543545	CDK13	Q14004	1512 aa	Known RBP	15.85	■□□□□ 0.13
CPSF7-221	ENST00000543545	CCDC18	Q5T9S5	1454 aa		15.84	■□□□□ 0.13
CPSF7-221	ENST00000543545	FAM69C	Q0P6D2	419 aa		15.82	■□□□□ 0.12
CPSF7-221	ENST00000543545	MTUS2	Q5JR59	1369 aa		15.82	■□□□□ 0.12
CPSF7-221	ENST00000543545	KANK4	Q5T7N3	995 aa	Predicted RBP	15.8	■□□□□ 0.12
CPSF7-221	ENST00000543545	PPARGC1B	Q86YN6	1023 aa	Known RBP	15.8	■□□□□ 0.12
CPSF7-221	ENST00000543545	ZCCHC11	Q5TAX3	1644 aa	Known RBP	15.79	■□□□□ 0.12
CPSF7-221	ENST00000543545	WDR7	Q9Y4E6	1490 aa		15.79	■□□□□ 0.12
CPSF7-221	ENST00000543545	MAPKBP1	O60336	1514 aa		15.77	■□□□□ 0.11
CPSF7-221	ENST00000543545	TRO	Q12816	1431 aa	Predicted RBP	15.77	■□□□□ 0.11
CPSF7-221	ENST00000543545	MAP3K1	Q13233	1512 aa		15.73	■□□□□ 0.11
CPSF7-221	ENST00000543545	ABCC10	Q5T3U5	1492 aa		15.72	■□□□□ 0.11
CPSF7-221	ENST00000543545	TIAM1	Q13009	1591 aa		15.72	■□□□□ 0.11
CPSF7-221	ENST00000543545	LRRC9	Q6ZRR7	1453 aa		15.71	■□□□□ 0.11
CPSF7-221	ENST00000543545	MAGI3	Q5TCQ9	1506 aa		15.68	■□□□□ 0.1
CPSF7-221	ENST00000543545	CD109	Q6YHK3	1445 aa		15.68	■□□□□ 0.1
CPSF7-221	ENST00000543545	CCNB3	Q8WWL7	1395 aa		15.67	■□□□□ 0.1
CPSF7-221	ENST00000543545	EHBP1L1	Q8N3D4	1523 aa		15.67	■□□□□ 0.1
CPSF7-221	ENST00000543545	LRRIQ1	Q96JM4	1722 aa		15.66	■□□□□ 0.1
CPSF7-221	ENST00000543545	ZNF777	Q9ULD5	760 aa	Predicted RBP	15.65	■□□□□ 0.1
CPSF7-221	ENST00000543545	CFDP1	Q9UEE9	299 aa	Predicted RBP	15.64	■□□□□ 0.09
CPSF7-221	ENST00000543545	NCOA2	Q15596	1464 aa		15.64	■□□□□ 0.09
CPSF7-221	ENST00000543545	CFAP43	Q8NDM7	1665 aa		15.63	■□□□□ 0.09
CPSF7-221	ENST00000543545	EFCAB2	Q5VUJ9	269 aa		15.63	■□□□□ 0.09
CPSF7-221	ENST00000543545	KIF14	Q15058	1648 aa		15.63	■□□□□ 0.09
CPSF7-221	ENST00000543545	DIP2B	Q9P265	1576 aa		15.62	■□□□□ 0.09
CPSF7-221	ENST00000543545	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	15.61	■□□□□ 0.09
CPSF7-221	ENST00000543545	GLI2	P10070	1586 aa		15.61	■□□□□ 0.09
CPSF7-221	ENST00000543545	PLCH2	O75038	1416 aa		15.6	■□□□□ 0.09
CPSF7-221	ENST00000543545	PHLDB1	Q86UU1	1377 aa		15.58	■□□□□ 0.08
CPSF7-221	ENST00000543545	GPATCH8	Q9UKJ3	1502 aa	Known RBP	15.58	■□□□□ 0.08
CPSF7-221	ENST00000543545	TTC37	Q6PGP7	1564 aa		15.56	■□□□□ 0.08
CPSF7-221	ENST00000543545	SUPT6H	Q7KZ85	1726 aa	Known RBP	15.56	■□□□□ 0.08
CPSF7-221	ENST00000543545	ABCA9	Q8IUA7	1624 aa		15.55	■□□□□ 0.08
CPSF7-221	ENST00000543545	ARHGAP5	Q13017	1502 aa		15.55	■□□□□ 0.08
CPSF7-221	ENST00000543545	FAM50A	Q14320	339 aa	Known RBP	15.55	■□□□□ 0.08
CPSF7-221	ENST00000543545	TEX14	Q8IWB6	1497 aa		15.54	■□□□□ 0.08
CPSF7-221	ENST00000543545	MYOM3	Q5VTT5	1437 aa		15.54	■□□□□ 0.08
CPSF7-221	ENST00000543545	ZNF644	Q9H582	1327 aa	Predicted RBP	15.54	■□□□□ 0.08
CPSF7-221	ENST00000543545	FANCA	O15360	1455 aa		15.53	■□□□□ 0.08
CPSF7-221	ENST00000543545	AKNA	Q7Z591	1439 aa		15.51	■□□□□ 0.07

Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms