RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 ATP1B4Q9UN42 357 aaPredicted RBP24.51■■□□□ 1.51
COL4A1-204ENST00000543140 TIAM1Q13009 1591 aa24.49■■□□□ 1.51
COL4A1-204ENST00000543140 FHAD1B1AJZ9 1412 aa24.47■■□□□ 1.51
COL4A1-204ENST00000543140 MRC2Q9UBG0 1479 aa24.46■■□□□ 1.51
COL4A1-204ENST00000543140 PCF11O94913 1555 aaKnown RBP24.45■■□□□ 1.51
COL4A1-204ENST00000543140 RRBP1Q9P2E9 1410 aaKnown RBP24.45■■□□□ 1.5
COL4A1-204ENST00000543140 EFCAB5A4FU69 1503 aa24.43■■□□□ 1.5
COL4A1-204ENST00000543140 MAP3K1Q13233 1512 aa24.41■■□□□ 1.5
COL4A1-204ENST00000543140 AQRO60306 1485 aaKnown RBP eCLIP24.41■■□□□ 1.5
COL4A1-204ENST00000543140 CCNB3Q8WWL7 1395 aa24.4■■□□□ 1.5
COL4A1-204ENST00000543140 LRRC9Q6ZRR7 1453 aa24.39■■□□□ 1.5
COL4A1-204ENST00000543140 ITGAEP38570 1179 aa24.38■■□□□ 1.49
COL4A1-204ENST00000543140 PBRM1Q86U86 1689 aa24.37■■□□□ 1.49
COL4A1-204ENST00000543140 CFAP43Q8NDM7 1665 aa24.34■■□□□ 1.49
COL4A1-204ENST00000543140 FYCO1Q9BQS8 1478 aa24.32■■□□□ 1.48
COL4A1-204ENST00000543140 CASKIN1Q8WXD9 1431 aa24.32■■□□□ 1.48
COL4A1-204ENST00000543140 PHLDB1Q86UU1 1377 aa24.29■■□□□ 1.48
COL4A1-204ENST00000543140 FMN1Q68DA7 1419 aa24.29■■□□□ 1.48
COL4A1-204ENST00000543140 ZNF608Q9ULD9 1512 aaPredicted RBP24.28■■□□□ 1.48
COL4A1-204ENST00000543140 SAMD9Q5K651 1589 aa24.28■■□□□ 1.48
COL4A1-204ENST00000543140 WDR62O43379 1518 aa24.27■■□□□ 1.48
COL4A1-204ENST00000543140 ERCC6Q03468 1493 aa24.26■■□□□ 1.47
COL4A1-204ENST00000543140 GRIN2BQ13224 1484 aa24.24■■□□□ 1.47
COL4A1-204ENST00000543140 ADAMTS12P58397 1594 aa24.24■■□□□ 1.47
COL4A1-204ENST00000543140 IFT140Q96RY7 1462 aa24.24■■□□□ 1.47
COL4A1-204ENST00000543140 SNAPC4Q5SXM2 1469 aa24.23■■□□□ 1.47
COL4A1-204ENST00000543140 DHX57Q6P158 1386 aaKnown RBP24.23■■□□□ 1.47
COL4A1-204ENST00000543140 FAM50AQ14320 339 aaKnown RBP24.22■■□□□ 1.47
COL4A1-204ENST00000543140 LRRIQ1Q96JM4 1722 aa24.16■■□□□ 1.46
COL4A1-204ENST00000543140 DIEXFQ68CQ4 756 aaKnown RBP24.15■■□□□ 1.46
COL4A1-204ENST00000543140 IQGAP2Q13576 1575 aa24.15■■□□□ 1.46
COL4A1-204ENST00000543140 ZNF316A6NFI3 1004 aaPredicted RBP24.12■■□□□ 1.45
COL4A1-204ENST00000543140 MTUS2Q5JR59 1369 aa24.12■■□□□ 1.45
COL4A1-204ENST00000543140 EIF4G3O43432 1585 aaKnown RBP24.11■■□□□ 1.45
COL4A1-204ENST00000543140 RAB3GAP2Q9H2M9 1393 aa24.1■■□□□ 1.45
COL4A1-204ENST00000543140 THOC2Q8NI27 1593 aaKnown RBP24.09■■□□□ 1.45
COL4A1-204ENST00000543140 CLSPNQ9HAW4 1339 aa24.09■■□□□ 1.45
COL4A1-204ENST00000543140 SETD5Q9C0A6 1442 aa24.03■■□□□ 1.44
COL4A1-204ENST00000543140 FGD6Q6ZV73 1430 aa24■■□□□ 1.43
COL4A1-204ENST00000543140 ARID3CA6NKF2 412 aa24■■□□□ 1.43
COL4A1-204ENST00000543140 GRIN2AQ12879 1464 aa23.99■■□□□ 1.43
COL4A1-204ENST00000543140 NCOA2Q15596 1464 aa23.98■■□□□ 1.43
COL4A1-204ENST00000543140 UGGT2Q9NYU1 1516 aa23.98■■□□□ 1.43
COL4A1-204ENST00000543140 KIAA0586Q9BVV6 1533 aa23.97■■□□□ 1.43
COL4A1-204ENST00000543140 FBLN2P98095 1184 aa23.97■■□□□ 1.43
COL4A1-204ENST00000543140 MAGI3Q5TCQ9 1506 aa23.95■■□□□ 1.43
COL4A1-204ENST00000543140 CHMP7Q8WUX9 453 aaPredicted RBP23.95■■□□□ 1.42
COL4A1-204ENST00000543140 SUPT6HQ7KZ85 1726 aaKnown RBP23.95■■□□□ 1.42
COL4A1-204ENST00000543140 HECW1Q76N89 1606 aa23.95■■□□□ 1.42
COL4A1-204ENST00000543140 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.94■■□□□ 1.42
COL4A1-204ENST00000543140 EHBP1L1Q8N3D4 1523 aa23.93■■□□□ 1.42
COL4A1-204ENST00000543140 CCDC18Q5T9S5 1454 aa23.93■■□□□ 1.42
COL4A1-204ENST00000543140 EPRSP07814 1512 aaKnown RBP23.91■■□□□ 1.42
COL4A1-204ENST00000543140 MAGI1Q96QZ7 1491 aaPredicted RBP23.91■■□□□ 1.42
COL4A1-204ENST00000543140 CDK13Q14004 1512 aaKnown RBP23.91■■□□□ 1.42
COL4A1-204ENST00000543140 MYOM3Q5VTT5 1437 aa23.9■■□□□ 1.42
COL4A1-204ENST00000543140 DISP1Q96F81 1524 aa23.9■■□□□ 1.42
COL4A1-204ENST00000543140 MAPKBP1O60336 1514 aa23.89■■□□□ 1.41
COL4A1-204ENST00000543140 KIAA0556O60303 1618 aa23.88■■□□□ 1.41
COL4A1-204ENST00000543140 SYNJ2O15056 1496 aa23.87■■□□□ 1.41
COL4A1-204ENST00000543140 CEP170Q5SW79 1584 aa23.85■■□□□ 1.41
COL4A1-204ENST00000543140 PTPRKQ15262 1439 aa23.85■■□□□ 1.41
COL4A1-204ENST00000543140 ARHGEF11O15085 1522 aa23.82■■□□□ 1.4
COL4A1-204ENST00000543140 PTPN23Q9H3S7 1636 aa23.81■■□□□ 1.4
COL4A1-204ENST00000543140 SIN3AQ96ST3 1273 aa23.78■■□□□ 1.4
COL4A1-204ENST00000543140 NEUROD1Q13562 356 aa23.77■■□□□ 1.4
COL4A1-204ENST00000543140 NUP153P49790 1475 aaKnown RBP23.75■■□□□ 1.39
COL4A1-204ENST00000543140 RAPGEF6Q8TEU7 1601 aa23.75■■□□□ 1.39
COL4A1-204ENST00000543140 JPH4Q96JJ6 628 aa23.73■■□□□ 1.39
COL4A1-204ENST00000543140 HFM1A2PYH4 1435 aa23.73■■□□□ 1.39
COL4A1-204ENST00000543140 CHIC2Q9UKJ5 165 aa23.72■■□□□ 1.39
COL4A1-204ENST00000543140 NUP160Q12769 1436 aa23.71■■□□□ 1.39
COL4A1-204ENST00000543140 MIER1Q8N108 512 aa23.71■■□□□ 1.39
COL4A1-204ENST00000543140 NAIPQ13075 1403 aa23.69■■□□□ 1.38
COL4A1-204ENST00000543140 PLB1Q6P1J6 1458 aa23.68■■□□□ 1.38
COL4A1-204ENST00000543140 RRP7BPQ9NSQ0 103 aa23.68■■□□□ 1.38
COL4A1-204ENST00000543140 TCOF1Q13428 1488 aaKnown RBP23.67■■□□□ 1.38
COL4A1-204ENST00000543140 CARMIL2Q6F5E8 1435 aa23.66■■□□□ 1.38
COL4A1-204ENST00000543140 CDK11AQ9UQ88 783 aaPredicted RBP23.64■■□□□ 1.38
COL4A1-204ENST00000543140 MIA2Q96PC5 1412 aa23.63■■□□□ 1.37
COL4A1-204ENST00000543140 UACAQ9BZF9 1416 aa23.61■■□□□ 1.37
COL4A1-204ENST00000543140 PRG4Q92954 1404 aaPredicted RBP23.6■■□□□ 1.37
COL4A1-204ENST00000543140 ZNF644Q9H582 1327 aaPredicted RBP23.58■■□□□ 1.37
COL4A1-204ENST00000543140 SCAF1Q9H7N4 1312 aaKnown RBP23.56■■□□□ 1.36
COL4A1-204ENST00000543140 YTHDC1Q96MU7 727 aaKnown RBP23.56■■□□□ 1.36
COL4A1-204ENST00000543140 ACIN1Q9UKV3 1341 aaKnown RBP23.55■■□□□ 1.36
COL4A1-204ENST00000543140 TROQ12816 1431 aaPredicted RBP23.54■■□□□ 1.36
COL4A1-204ENST00000543140 GCC2Q8IWJ2 1684 aa23.53■■□□□ 1.36
COL4A1-204ENST00000543140 CENPBP07199 599 aaPredicted RBP23.52■■□□□ 1.36
COL4A1-204ENST00000543140 KDM6BO15054 1643 aa23.52■■□□□ 1.36
COL4A1-204ENST00000543140 TRIM52Q96A61 297 aa23.52■■□□□ 1.35
COL4A1-204ENST00000543140 TIMELESSQ9UNS1 1208 aa23.51■■□□□ 1.35
COL4A1-204ENST00000543140 CHD1O14646 1710 aa23.5■■□□□ 1.35
COL4A1-204ENST00000543140 KIF14Q15058 1648 aa23.49■■□□□ 1.35
COL4A1-204ENST00000543140 DAPK1P53355 1430 aa23.49■■□□□ 1.35
COL4A1-204ENST00000543140 PPP1R15AO75807 674 aaPredicted RBP23.48■■□□□ 1.35
COL4A1-204ENST00000543140 CFDP1Q9UEE9 299 aaPredicted RBP23.48■■□□□ 1.35
COL4A1-204ENST00000543140 ABCA8O94911 1581 aa23.47■■□□□ 1.35
COL4A1-204ENST00000543140 ABCC5O15440 1437 aa23.47■■□□□ 1.35
COL4A1-204ENST00000543140 AKNAQ7Z591 1439 aa23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms