RNA–Protein interactions for RNA: ENST00000543048.5

TNFRSF1A-214, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-214ENST00000543048 KIF27Q86VH2 1401 aa16.7■□□□□ 0.26
TNFRSF1A-214ENST00000543048 IGF1RP08069 1367 aa16.67■□□□□ 0.26
TNFRSF1A-214ENST00000543048 ARAP1Q96P48 1450 aa16.67■□□□□ 0.26
TNFRSF1A-214ENST00000543048 NUP160Q12769 1436 aa16.66■□□□□ 0.26
TNFRSF1A-214ENST00000543048 CEP170Q5SW79 1584 aa16.65■□□□□ 0.26
TNFRSF1A-214ENST00000543048 CUL7Q14999 1698 aa16.6■□□□□ 0.25
TNFRSF1A-214ENST00000543048 JPH4Q96JJ6 628 aa16.58■□□□□ 0.24
TNFRSF1A-214ENST00000543048 SHROOM2Q13796 1616 aa16.57■□□□□ 0.24
TNFRSF1A-214ENST00000543048 PPP4R3CPQ6ZMV5 832 aa16.57■□□□□ 0.24
TNFRSF1A-214ENST00000543048 CARMIL1Q5VZK9 1371 aa16.56■□□□□ 0.24
TNFRSF1A-214ENST00000543048 SCAF1Q9H7N4 1312 aaKnown RBP16.54■□□□□ 0.24
TNFRSF1A-214ENST00000543048 ERCC6L2Q5T890 1561 aa16.54■□□□□ 0.24
TNFRSF1A-214ENST00000543048 PRG4Q92954 1404 aaPredicted RBP16.51■□□□□ 0.23
TNFRSF1A-214ENST00000543048 RUSC2Q8N2Y8 1516 aa16.5■□□□□ 0.23
TNFRSF1A-214ENST00000543048 KIAA0586Q9BVV6 1533 aa16.5■□□□□ 0.23
TNFRSF1A-214ENST00000543048 MAPK8IP2Q13387 824 aaPredicted RBP16.48■□□□□ 0.23
TNFRSF1A-214ENST00000543048 TRHP20396 242 aaPredicted RBP16.47■□□□□ 0.23
TNFRSF1A-214ENST00000543048 RAPGEF2Q9Y4G8 1499 aa16.43■□□□□ 0.22
TNFRSF1A-214ENST00000543048 POTEDQ86YR6 584 aa16.38■□□□□ 0.21
TNFRSF1A-214ENST00000543048 IQGAP2Q13576 1575 aa16.36■□□□□ 0.21
TNFRSF1A-214ENST00000543048 CSRNP3Q8WYN3 585 aa16.34■□□□□ 0.21
TNFRSF1A-214ENST00000543048 CARMIL2Q6F5E8 1435 aa16.34■□□□□ 0.21
TNFRSF1A-214ENST00000543048 NPM1P06748 294 aaKnown RBP eCLIP16.33■□□□□ 0.2
TNFRSF1A-214ENST00000543048 PRXQ9BXM0 1461 aa16.31■□□□□ 0.2
TNFRSF1A-214ENST00000543048 PTPRGP23470 1445 aa16.31■□□□□ 0.2
TNFRSF1A-214ENST00000543048 CTTNBP2Q8WZ74 1663 aa16.3■□□□□ 0.2
TNFRSF1A-214ENST00000543048 TNIKQ9UKE5 1360 aa16.29■□□□□ 0.2
TNFRSF1A-214ENST00000543048 TTBK1Q5TCY1 1321 aaPredicted RBP16.29■□□□□ 0.2
TNFRSF1A-214ENST00000543048 DMRT2Q9Y5R5 561 aa16.27■□□□□ 0.2
TNFRSF1A-214ENST00000543048 UGGT2Q9NYU1 1516 aa16.27■□□□□ 0.2
TNFRSF1A-214ENST00000543048 EEA1Q15075 1411 aa16.27■□□□□ 0.19
TNFRSF1A-214ENST00000543048 ADCY10Q96PN6 1610 aa16.26■□□□□ 0.19
TNFRSF1A-214ENST00000543048 DISP1Q96F81 1524 aa16.25■□□□□ 0.19
TNFRSF1A-214ENST00000543048 FAM9AQ8IZU1 332 aaPredicted RBP16.23■□□□□ 0.19
TNFRSF1A-214ENST00000543048 KIF13AQ9H1H9 1805 aa16.22■□□□□ 0.19
TNFRSF1A-214ENST00000543048 KIAA0556O60303 1618 aa16.19■□□□□ 0.18
TNFRSF1A-214ENST00000543048 GOLGA3Q08378 1498 aa16.19■□□□□ 0.18
TNFRSF1A-214ENST00000543048 MAPKBP1O60336 1514 aa16.18■□□□□ 0.18
TNFRSF1A-214ENST00000543048 UACAQ9BZF9 1416 aa16.18■□□□□ 0.18
TNFRSF1A-214ENST00000543048 FAM69CQ0P6D2 419 aa16.17■□□□□ 0.18
TNFRSF1A-214ENST00000543048 UHRF1BP1LA0JNW5 1464 aa16.16■□□□□ 0.18
TNFRSF1A-214ENST00000543048 ABCC2Q92887 1545 aa16.14■□□□□ 0.18
TNFRSF1A-214ENST00000543048 CNKSR2Q8WXI2 1034 aa16.14■□□□□ 0.17
TNFRSF1A-214ENST00000543048 ABCC10Q5T3U5 1492 aa16.14■□□□□ 0.17
TNFRSF1A-214ENST00000543048 P3H3Q8IVL6 736 aa16.11■□□□□ 0.17
TNFRSF1A-214ENST00000543048 KIF21BO75037 1637 aa16.1■□□□□ 0.17
TNFRSF1A-214ENST00000543048 DIP2BQ9P265 1576 aa16.09■□□□□ 0.17
TNFRSF1A-214ENST00000543048 PLB1Q6P1J6 1458 aa16.08■□□□□ 0.16
TNFRSF1A-214ENST00000543048 KDM5BQ9UGL1 1544 aa16.08■□□□□ 0.16
TNFRSF1A-214ENST00000543048 TSPOAP1O95153 1857 aa16.08■□□□□ 0.16
TNFRSF1A-214ENST00000543048 NCBP3Q53F19 620 aaKnown RBP16.07■□□□□ 0.16
TNFRSF1A-214ENST00000543048 ASXL2Q76L83 1435 aa16.07■□□□□ 0.16
TNFRSF1A-214ENST00000543048 RANGAP1P46060 587 aaPredicted RBP16.06■□□□□ 0.16
TNFRSF1A-214ENST00000543048 ZCCHC11Q5TAX3 1644 aaKnown RBP16.05■□□□□ 0.16
TNFRSF1A-214ENST00000543048 UBTFP17480 764 aaKnown RBP16.05■□□□□ 0.16
TNFRSF1A-214ENST00000543048 ABCA8O94911 1581 aa16.04■□□□□ 0.16
TNFRSF1A-214ENST00000543048 SAMD9Q5K651 1589 aa16.04■□□□□ 0.16
TNFRSF1A-214ENST00000543048 EHMT2Q96KQ7 1210 aa16.03■□□□□ 0.16
TNFRSF1A-214ENST00000543048 GLI2P10070 1586 aa16■□□□□ 0.15
TNFRSF1A-214ENST00000543048 KCNA4P22459 653 aa15.97■□□□□ 0.15
TNFRSF1A-214ENST00000543048 EPRSP07814 1512 aaKnown RBP15.97■□□□□ 0.15
TNFRSF1A-214ENST00000543048 KCNH8Q96L42 1107 aa15.96■□□□□ 0.15
TNFRSF1A-214ENST00000543048 FHOD3Q2V2M9 1422 aa15.94■□□□□ 0.14
TNFRSF1A-214ENST00000543048 EFCAB5A4FU69 1503 aa15.94■□□□□ 0.14
TNFRSF1A-214ENST00000543048 RAPGEF6Q8TEU7 1601 aa15.94■□□□□ 0.14
TNFRSF1A-214ENST00000543048 ARID3CA6NKF2 412 aa15.94■□□□□ 0.14
TNFRSF1A-214ENST00000543048 ATP10BO94823 1461 aa15.94■□□□□ 0.14
TNFRSF1A-214ENST00000543048 WDR7Q9Y4E6 1490 aa15.94■□□□□ 0.14
TNFRSF1A-214ENST00000543048 PPRC1Q5VV67 1664 aaKnown RBP15.92■□□□□ 0.14
TNFRSF1A-214ENST00000543048 MAP3K4Q9Y6R4 1608 aa15.91■□□□□ 0.14
TNFRSF1A-214ENST00000543048 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.91■□□□□ 0.14
TNFRSF1A-214ENST00000543048 HNRNPUL2Q1KMD3 747 aaKnown RBP15.91■□□□□ 0.14
TNFRSF1A-214ENST00000543048 KDM6BO15054 1643 aa15.89■□□□□ 0.13
TNFRSF1A-214ENST00000543048 CFAP43Q8NDM7 1665 aa15.87■□□□□ 0.13
TNFRSF1A-214ENST00000543048 RNF216Q9NWF9 866 aaPredicted RBP15.86■□□□□ 0.13
TNFRSF1A-214ENST00000543048 CD109Q6YHK3 1445 aa15.85■□□□□ 0.13
TNFRSF1A-214ENST00000543048 NUP153P49790 1475 aaKnown RBP15.85■□□□□ 0.13
TNFRSF1A-214ENST00000543048 TEX14Q8IWB6 1497 aa15.85■□□□□ 0.13
TNFRSF1A-214ENST00000543048 ARHGAP35Q9NRY4 1499 aa15.84■□□□□ 0.13
TNFRSF1A-214ENST00000543048 PLEKHD1A6NEE1 506 aa15.84■□□□□ 0.13
TNFRSF1A-214ENST00000543048 NPM3O75607 178 aaKnown RBP15.84■□□□□ 0.13
TNFRSF1A-214ENST00000543048 HOXD11P31277 338 aaPredicted RBP15.84■□□□□ 0.13
TNFRSF1A-214ENST00000543048 FMN1Q68DA7 1419 aa15.82■□□□□ 0.12
TNFRSF1A-214ENST00000543048 MAGI3Q5TCQ9 1506 aa15.81■□□□□ 0.12
TNFRSF1A-214ENST00000543048 ATP1B4Q9UN42 357 aaPredicted RBP15.81■□□□□ 0.12
TNFRSF1A-214ENST00000543048 ABCA9Q8IUA7 1624 aa15.78■□□□□ 0.12
TNFRSF1A-214ENST00000543048 COL17A1Q9UMD9 1497 aaPredicted RBP15.78■□□□□ 0.12
TNFRSF1A-214ENST00000543048 CDK11AQ9UQ88 783 aaPredicted RBP15.74■□□□□ 0.11
TNFRSF1A-214ENST00000543048 HECW1Q76N89 1606 aa15.74■□□□□ 0.11
TNFRSF1A-214ENST00000543048 PHLDB1Q86UU1 1377 aa15.73■□□□□ 0.11
TNFRSF1A-214ENST00000543048 CDK13Q14004 1512 aaKnown RBP15.73■□□□□ 0.11
TNFRSF1A-214ENST00000543048 CLIP1P30622 1438 aa15.7■□□□□ 0.1
TNFRSF1A-214ENST00000543048 ARAP3Q8WWN8 1544 aa15.69■□□□□ 0.1
TNFRSF1A-214ENST00000543048 LRRIQ1Q96JM4 1722 aa15.69■□□□□ 0.1
TNFRSF1A-214ENST00000543048 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.68■□□□□ 0.1
TNFRSF1A-214ENST00000543048 CASKIN1Q8WXD9 1431 aa15.68■□□□□ 0.1
TNFRSF1A-214ENST00000543048 NEO1Q92859 1461 aa15.67■□□□□ 0.1
TNFRSF1A-214ENST00000543048 DCAF8L1A6NGE4 600 aa15.66■□□□□ 0.1
TNFRSF1A-214ENST00000543048 KDM4FA0A1W2PPD8 638 aa15.64■□□□□ 0.09
TNFRSF1A-214ENST00000543048 LOC105371045A0A1W2PR82 267 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms