RNA–Protein interactions for RNA: ENST00000541764.5

LMO3-227, Transcript of LIM domain only 3, humanhuman

TSL 1 (best)

Gene LMO3, Length 1,489 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-227ENST00000541764 LAMC3Q9Y6N6 1575 aa14.82□□□□□ -0.04
LMO3-227ENST00000541764 TOPBP1Q92547 1522 aa14.82□□□□□ -0.04
LMO3-227ENST00000541764 HNRNPUL2Q1KMD3 747 aaKnown RBP14.8□□□□□ -0.04
LMO3-227ENST00000541764 KANK4Q5T7N3 995 aaPredicted RBP14.78□□□□□ -0.04
LMO3-227ENST00000541764 POLA1P09884 1462 aaPredicted RBP14.78□□□□□ -0.04
LMO3-227ENST00000541764 CUL7Q14999 1698 aa14.77□□□□□ -0.05
LMO3-227ENST00000541764 FHAD1B1AJZ9 1412 aa14.76□□□□□ -0.05
LMO3-227ENST00000541764 ZNF316A6NFI3 1004 aaPredicted RBP14.76□□□□□ -0.05
LMO3-227ENST00000541764 DIEXFQ68CQ4 756 aaKnown RBP14.76□□□□□ -0.05
LMO3-227ENST00000541764 TIAM1Q13009 1591 aa14.75□□□□□ -0.05
LMO3-227ENST00000541764 RANGAP1P46060 587 aaPredicted RBP14.75□□□□□ -0.05
LMO3-227ENST00000541764 EFCAB5A4FU69 1503 aa14.74□□□□□ -0.05
LMO3-227ENST00000541764 CCNB3Q8WWL7 1395 aa14.73□□□□□ -0.05
LMO3-227ENST00000541764 WDR97A6NE52 1622 aa14.72□□□□□ -0.05
LMO3-227ENST00000541764 AQRO60306 1485 aaKnown RBP eCLIP14.72□□□□□ -0.05
LMO3-227ENST00000541764 DHX57Q6P158 1386 aaKnown RBP14.71□□□□□ -0.05
LMO3-227ENST00000541764 RAD54L2Q9Y4B4 1467 aa14.7□□□□□ -0.06
LMO3-227ENST00000541764 NESP48681 1621 aa14.7□□□□□ -0.06
LMO3-227ENST00000541764 LRRC9Q6ZRR7 1453 aa14.69□□□□□ -0.06
LMO3-227ENST00000541764 PDS5BQ9NTI5 1447 aa14.69□□□□□ -0.06
LMO3-227ENST00000541764 POTEHQ6S545 545 aa14.69□□□□□ -0.06
LMO3-227ENST00000541764 URB2Q14146 1524 aaKnown RBP14.69□□□□□ -0.06
LMO3-227ENST00000541764 CFAP43Q8NDM7 1665 aa14.68□□□□□ -0.06
LMO3-227ENST00000541764 DNAJC5BQ9UF47 199 aa14.68□□□□□ -0.06
LMO3-227ENST00000541764 FYCO1Q9BQS8 1478 aa14.66□□□□□ -0.06
LMO3-227ENST00000541764 ABCA5Q8WWZ7 1642 aa14.66□□□□□ -0.06
LMO3-227ENST00000541764 CASKIN1Q8WXD9 1431 aa14.65□□□□□ -0.06
LMO3-227ENST00000541764 CTTNBP2Q8WZ74 1663 aa14.64□□□□□ -0.07
LMO3-227ENST00000541764 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.64□□□□□ -0.07
LMO3-227ENST00000541764 RNF216Q9NWF9 866 aaPredicted RBP14.63□□□□□ -0.07
LMO3-227ENST00000541764 PCF11O94913 1555 aaKnown RBP14.62□□□□□ -0.07
LMO3-227ENST00000541764 FMN1Q68DA7 1419 aa14.6□□□□□ -0.07
LMO3-227ENST00000541764 PPP4R3CPQ6ZMV5 832 aa14.6□□□□□ -0.07
LMO3-227ENST00000541764 ACIN1Q9UKV3 1341 aaKnown RBP14.6□□□□□ -0.07
LMO3-227ENST00000541764 GAPVD1Q14C86 1478 aa14.59□□□□□ -0.07
LMO3-227ENST00000541764 SAMD9Q5K651 1589 aa14.58□□□□□ -0.07
LMO3-227ENST00000541764 CENPBP07199 599 aaPredicted RBP14.57□□□□□ -0.08
LMO3-227ENST00000541764 PHLDB1Q86UU1 1377 aa14.56□□□□□ -0.08
LMO3-227ENST00000541764 FHOD3Q2V2M9 1422 aa14.56□□□□□ -0.08
LMO3-227ENST00000541764 THOC2Q8NI27 1593 aaKnown RBP14.56□□□□□ -0.08
LMO3-227ENST00000541764 TARBP1Q13395 1621 aaKnown RBP14.55□□□□□ -0.08
LMO3-227ENST00000541764 SNAPC4Q5SXM2 1469 aa14.55□□□□□ -0.08
LMO3-227ENST00000541764 CNKSR2Q8WXI2 1034 aa14.55□□□□□ -0.08
LMO3-227ENST00000541764 SETD5Q9C0A6 1442 aa14.54□□□□□ -0.08
LMO3-227ENST00000541764 RAB3GAP2Q9H2M9 1393 aa14.52□□□□□ -0.08
LMO3-227ENST00000541764 KIF21AQ7Z4S6 1674 aa14.52□□□□□ -0.09
LMO3-227ENST00000541764 TDRD9Q8NDG6 1382 aaKnown RBP14.5□□□□□ -0.09
LMO3-227ENST00000541764 MAPKBP1O60336 1514 aa14.49□□□□□ -0.09
LMO3-227ENST00000541764 NEUROD1Q13562 356 aa14.49□□□□□ -0.09
LMO3-227ENST00000541764 GRIN2BQ13224 1484 aa14.48□□□□□ -0.09
LMO3-227ENST00000541764 TIMELESSQ9UNS1 1208 aa14.46□□□□□ -0.09
LMO3-227ENST00000541764 MRC2Q9UBG0 1479 aa14.45□□□□□ -0.1
LMO3-227ENST00000541764 P3H3Q8IVL6 736 aa14.44□□□□□ -0.1
LMO3-227ENST00000541764 FGD6Q6ZV73 1430 aa14.44□□□□□ -0.1
LMO3-227ENST00000541764 MIER1Q8N108 512 aa14.42□□□□□ -0.1
LMO3-227ENST00000541764 ARHGEF11O15085 1522 aa14.42□□□□□ -0.1
LMO3-227ENST00000541764 EHBP1L1Q8N3D4 1523 aa14.42□□□□□ -0.1
LMO3-227ENST00000541764 PBRM1Q86U86 1689 aa14.42□□□□□ -0.1
LMO3-227ENST00000541764 ADAMTS12P58397 1594 aa14.42□□□□□ -0.1
LMO3-227ENST00000541764 CCDC18Q5T9S5 1454 aa14.41□□□□□ -0.1
LMO3-227ENST00000541764 MTUS2Q5JR59 1369 aa14.39□□□□□ -0.11
LMO3-227ENST00000541764 FAM50AQ14320 339 aaKnown RBP14.38□□□□□ -0.11
LMO3-227ENST00000541764 IFT140Q96RY7 1462 aa14.38□□□□□ -0.11
LMO3-227ENST00000541764 LRRIQ1Q96JM4 1722 aa14.38□□□□□ -0.11
LMO3-227ENST00000541764 IQGAP2Q13576 1575 aa14.38□□□□□ -0.11
LMO3-227ENST00000541764 MYOM3Q5VTT5 1437 aa14.38□□□□□ -0.11
LMO3-227ENST00000541764 ITGAEP38570 1179 aa14.38□□□□□ -0.11
LMO3-227ENST00000541764 PELP1Q8IZL8 1130 aaKnown RBP14.38□□□□□ -0.11
LMO3-227ENST00000541764 WDR62O43379 1518 aa14.37□□□□□ -0.11
LMO3-227ENST00000541764 HFM1A2PYH4 1435 aa14.37□□□□□ -0.11
LMO3-227ENST00000541764 SUPT6HQ7KZ85 1726 aaKnown RBP14.37□□□□□ -0.11
LMO3-227ENST00000541764 NCOA2Q15596 1464 aa14.37□□□□□ -0.11
LMO3-227ENST00000541764 UGGT2Q9NYU1 1516 aa14.37□□□□□ -0.11
LMO3-227ENST00000541764 HECW1Q76N89 1606 aa14.35□□□□□ -0.11
LMO3-227ENST00000541764 TCOF1Q13428 1488 aaKnown RBP14.35□□□□□ -0.11
LMO3-227ENST00000541764 ATP1B4Q9UN42 357 aaPredicted RBP14.34□□□□□ -0.11
LMO3-227ENST00000541764 AKNAQ7Z591 1439 aa14.32□□□□□ -0.12
LMO3-227ENST00000541764 GTF3C3Q9Y5Q9 886 aa14.31□□□□□ -0.12
LMO3-227ENST00000541764 UACAQ9BZF9 1416 aa14.31□□□□□ -0.12
LMO3-227ENST00000541764 PTPN23Q9H3S7 1636 aa14.3□□□□□ -0.12
LMO3-227ENST00000541764 KIAA0586Q9BVV6 1533 aa14.3□□□□□ -0.12
LMO3-227ENST00000541764 PTPRKQ15262 1439 aa14.3□□□□□ -0.12
LMO3-227ENST00000541764 EPRSP07814 1512 aaKnown RBP14.3□□□□□ -0.12
LMO3-227ENST00000541764 MIA2Q96PC5 1412 aa14.29□□□□□ -0.12
LMO3-227ENST00000541764 MAGI3Q5TCQ9 1506 aa14.29□□□□□ -0.12
LMO3-227ENST00000541764 NAIPQ13075 1403 aa14.29□□□□□ -0.12
LMO3-227ENST00000541764 PPP1R15AO75807 674 aaPredicted RBP14.25□□□□□ -0.13
LMO3-227ENST00000541764 ZNF608Q9ULD9 1512 aaPredicted RBP14.23□□□□□ -0.13
LMO3-227ENST00000541764 KIAA0556O60303 1618 aa14.23□□□□□ -0.13
LMO3-227ENST00000541764 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.23□□□□□ -0.13
LMO3-227ENST00000541764 MAGI1Q96QZ7 1491 aaPredicted RBP14.23□□□□□ -0.13
LMO3-227ENST00000541764 DISP1Q96F81 1524 aa14.22□□□□□ -0.13
LMO3-227ENST00000541764 SIN3AQ96ST3 1273 aa14.22□□□□□ -0.13
LMO3-227ENST00000541764 GRIN2AQ12879 1464 aa14.22□□□□□ -0.13
LMO3-227ENST00000541764 GCC2Q8IWJ2 1684 aa14.22□□□□□ -0.13
LMO3-227ENST00000541764 EIF4G3O43432 1585 aaKnown RBP14.19□□□□□ -0.14
LMO3-227ENST00000541764 ROCK1Q13464 1354 aa14.18□□□□□ -0.14
LMO3-227ENST00000541764 YTHDC1Q96MU7 727 aaKnown RBP14.18□□□□□ -0.14
LMO3-227ENST00000541764 CDK13Q14004 1512 aaKnown RBP14.16□□□□□ -0.14
LMO3-227ENST00000541764 RAPGEF6Q8TEU7 1601 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms