RNA–Protein interactions for RNA: ENST00000541295.5

LMO3-225, Transcript of LIM domain only 3, humanhuman

TSL 2 BASIC

Gene LMO3, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-225ENST00000541295 CNKSR2Q8WXI2 1034 aa8.88□□□□□ -0.99
LMO3-225ENST00000541295 ABCC8Q09428 1581 aa8.87□□□□□ -0.99
LMO3-225ENST00000541295 PEG3Q9GZU2 1588 aa8.87□□□□□ -0.99
LMO3-225ENST00000541295 NAP1L5Q96NT1 182 aaPredicted RBP8.86□□□□□ -0.99
LMO3-225ENST00000541295 HMGB1P09429 215 aaKnown RBP8.85□□□□□ -0.99
LMO3-225ENST00000541295 PLCB2Q00722 1185 aa8.85□□□□□ -0.99
LMO3-225ENST00000541295 AAMPQ13685 434 aa8.82□□□□□ -1
LMO3-225ENST00000541295 NEUROD1Q13562 356 aa8.81□□□□□ -1
LMO3-225ENST00000541295 PAXIP1Q6ZW49 1069 aaPredicted RBP8.8□□□□□ -1
LMO3-225ENST00000541295 BCCIPQ9P287 314 aaKnown RBP eCLIP8.79□□□□□ -1
LMO3-225ENST00000541295 NCAPD3P42695 1498 aa8.79□□□□□ -1
LMO3-225ENST00000541295 DEKP35659 375 aaKnown RBP8.79□□□□□ -1
LMO3-225ENST00000541295 RSPH4AQ5TD94 716 aa8.78□□□□□ -1
LMO3-225ENST00000541295 CC2D2AQ9P2K1 1620 aa8.77□□□□□ -1
LMO3-225ENST00000541295 RBM10P98175 930 aaKnown RBP8.77□□□□□ -1.01
LMO3-225ENST00000541295 HMGXB3Q12766 1538 aa8.77□□□□□ -1.01
LMO3-225ENST00000541295 WRNQ14191 1432 aaPredicted RBP eCLIP8.75□□□□□ -1.01
LMO3-225ENST00000541295 RSPH6AQ9H0K4 717 aa8.75□□□□□ -1.01
LMO3-225ENST00000541295 UBTFP17480 764 aaKnown RBP8.73□□□□□ -1.01
LMO3-225ENST00000541295 SOGA1O94964 1423 aa8.72□□□□□ -1.01
LMO3-225ENST00000541295 ZMYND15Q9H091 742 aa8.71□□□□□ -1.01
LMO3-225ENST00000541295 CCDC9Q9Y3X0 531 aaKnown RBP8.71□□□□□ -1.01
LMO3-225ENST00000541295 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.71□□□□□ -1.02
LMO3-225ENST00000541295 SYNJ1O43426 1573 aa8.69□□□□□ -1.02
LMO3-225ENST00000541295 YTHDC1Q96MU7 727 aaKnown RBP8.68□□□□□ -1.02
LMO3-225ENST00000541295 RUSC2Q8N2Y8 1516 aa8.68□□□□□ -1.02
LMO3-225ENST00000541295 VSIG10Q8N0Z9 540 aa8.68□□□□□ -1.02
LMO3-225ENST00000541295 DNAJC5BQ9UF47 199 aa8.67□□□□□ -1.02
LMO3-225ENST00000541295 PCGF6Q9BYE7 350 aa8.66□□□□□ -1.02
LMO3-225ENST00000541295 CFTRP13569 1480 aa8.64□□□□□ -1.03
LMO3-225ENST00000541295 IRX6P78412 446 aaPredicted RBP8.64□□□□□ -1.03
LMO3-225ENST00000541295 CADPSQ9ULU8 1353 aa8.64□□□□□ -1.03
LMO3-225ENST00000541295 NESP48681 1621 aa8.62□□□□□ -1.03
LMO3-225ENST00000541295 CFAP44Q96MT7 982 aa8.62□□□□□ -1.03
LMO3-225ENST00000541295 PHF23Q9BUL5 403 aaPredicted RBP8.61□□□□□ -1.03
LMO3-225ENST00000541295 NCLP19338 710 aaKnown RBP8.6□□□□□ -1.03
LMO3-225ENST00000541295 IGSF3O75054 1194 aa8.6□□□□□ -1.03
LMO3-225ENST00000541295 CUX1P39880 1505 aa8.6□□□□□ -1.03
LMO3-225ENST00000541295 EEA1Q15075 1411 aa8.59□□□□□ -1.03
LMO3-225ENST00000541295 NAP1L2Q9ULW6 460 aaPredicted RBP8.59□□□□□ -1.03
LMO3-225ENST00000541295 TOP2BQ02880 1626 aa8.59□□□□□ -1.03
LMO3-225ENST00000541295 FANCD2Q9BXW9 1451 aa8.57□□□□□ -1.04
LMO3-225ENST00000541295 GOLGA3Q08378 1498 aa8.55□□□□□ -1.04
LMO3-225ENST00000541295 RTL5Q5HYW3 569 aaPredicted RBP8.55□□□□□ -1.04
LMO3-225ENST00000541295 BIVM-ERCC5R4GMW8 1640 aa8.55□□□□□ -1.04
LMO3-225ENST00000541295 CEP162Q5TB80 1403 aa8.55□□□□□ -1.04
LMO3-225ENST00000541295 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.55□□□□□ -1.04
LMO3-225ENST00000541295 PRDM2Q13029 1718 aa8.53□□□□□ -1.04
LMO3-225ENST00000541295 TICAM2Q86XR7 235 aa8.53□□□□□ -1.04
LMO3-225ENST00000541295 CEP164Q9UPV0 1460 aa8.53□□□□□ -1.04
LMO3-225ENST00000541295 CLSTN1O94985 981 aa8.53□□□□□ -1.04
LMO3-225ENST00000541295 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.53□□□□□ -1.04
LMO3-225ENST00000541295 PUS7Q96PZ0 661 aaKnown RBP8.52□□□□□ -1.05
LMO3-225ENST00000541295 CUX2O14529 1486 aa8.52□□□□□ -1.05
LMO3-225ENST00000541295 FGD5Q6ZNL6 1462 aa8.52□□□□□ -1.05
LMO3-225ENST00000541295 TNIKQ9UKE5 1360 aa8.52□□□□□ -1.05
LMO3-225ENST00000541295 KIF27Q86VH2 1401 aa8.52□□□□□ -1.05
LMO3-225ENST00000541295 RAPGEF2Q9Y4G8 1499 aa8.52□□□□□ -1.05
LMO3-225ENST00000541295 PTMSP20962 102 aa8.51□□□□□ -1.05
LMO3-225ENST00000541295 TSHZ2Q9NRE2 1034 aa8.51□□□□□ -1.05
LMO3-225ENST00000541295 SLC4A1APQ9BWU0 796 aaKnown RBP8.5□□□□□ -1.05
LMO3-225ENST00000541295 IPO4Q8TEX9 1081 aaKnown RBP8.49□□□□□ -1.05
LMO3-225ENST00000541295 ZNF592Q92610 1267 aa8.49□□□□□ -1.05
LMO3-225ENST00000541295 PSMD1Q99460 953 aa8.49□□□□□ -1.05
LMO3-225ENST00000541295 ZFP91Q96JP5 570 aaPredicted RBP8.49□□□□□ -1.05
LMO3-225ENST00000541295 RAD54L2Q9Y4B4 1467 aa8.48□□□□□ -1.05
LMO3-225ENST00000541295 LAMC3Q9Y6N6 1575 aa8.48□□□□□ -1.05
LMO3-225ENST00000541295 PDS5BQ9NTI5 1447 aa8.48□□□□□ -1.05
LMO3-225ENST00000541295 TEX2Q8IWB9 1127 aa8.48□□□□□ -1.05
LMO3-225ENST00000541295 KIF21BO75037 1637 aa8.47□□□□□ -1.05
LMO3-225ENST00000541295 PPP6R1Q9UPN7 881 aa8.47□□□□□ -1.05
LMO3-225ENST00000541295 CNPY4Q8N129 248 aa8.47□□□□□ -1.05
LMO3-225ENST00000541295 CCER1Q8TC90 406 aaPredicted RBP8.47□□□□□ -1.05
LMO3-225ENST00000541295 TOPBP1Q92547 1522 aa8.47□□□□□ -1.05
LMO3-225ENST00000541295 CLIP1P30622 1438 aa8.46□□□□□ -1.05
LMO3-225ENST00000541295 CNGB1Q14028 1251 aaPredicted RBP8.46□□□□□ -1.05
LMO3-225ENST00000541295 BBXQ8WY36 941 aaPredicted RBP8.46□□□□□ -1.05
LMO3-225ENST00000541295 CHMP4BQ9H444 224 aaKnown RBP8.45□□□□□ -1.06
LMO3-225ENST00000541295 DNMBPQ6XZF7 1577 aa8.45□□□□□ -1.06
LMO3-225ENST00000541295 CANXP27824 592 aaKnown RBP8.45□□□□□ -1.06
LMO3-225ENST00000541295 PRDM10Q9NQV6 1147 aa8.45□□□□□ -1.06
LMO3-225ENST00000541295 BRPF3Q9ULD4 1205 aa8.45□□□□□ -1.06
LMO3-225ENST00000541295 POLA1P09884 1462 aaPredicted RBP8.44□□□□□ -1.06
LMO3-225ENST00000541295 PLCD4Q9BRC7 762 aa8.44□□□□□ -1.06
LMO3-225ENST00000541295 URB2Q14146 1524 aaKnown RBP8.44□□□□□ -1.06
LMO3-225ENST00000541295 KIF21AQ7Z4S6 1674 aa8.44□□□□□ -1.06
LMO3-225ENST00000541295 FTSJ3Q8IY81 847 aaKnown RBP8.43□□□□□ -1.06
LMO3-225ENST00000541295 WWC1Q8IX03 1113 aa8.42□□□□□ -1.06
LMO3-225ENST00000541295 ARID3AQ99856 593 aa8.42□□□□□ -1.06
LMO3-225ENST00000541295 TDRD9Q8NDG6 1382 aaKnown RBP8.42□□□□□ -1.06
LMO3-225ENST00000541295 PTMAP06454 111 aaKnown RBP8.42□□□□□ -1.06
LMO3-225ENST00000541295 PRXQ9BXM0 1461 aa8.42□□□□□ -1.06
LMO3-225ENST00000541295 ARID4BQ4LE39 1312 aaPredicted RBP8.42□□□□□ -1.06
LMO3-225ENST00000541295 IGF1RP08069 1367 aa8.41□□□□□ -1.06
LMO3-225ENST00000541295 CARMIL1Q5VZK9 1371 aa8.41□□□□□ -1.06
LMO3-225ENST00000541295 ERCC6Q03468 1493 aa8.4□□□□□ -1.06
LMO3-225ENST00000541295 ZNF526Q8TF50 670 aaPredicted RBP8.4□□□□□ -1.06
LMO3-225ENST00000541295 SECISBP2LQ93073 1101 aaKnown RBP8.4□□□□□ -1.06
LMO3-225ENST00000541295 ZBTB7CA1YPR0 619 aa8.39□□□□□ -1.07
LMO3-225ENST00000541295 P3H3Q8IVL6 736 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 215.4 ms