RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 KIAA0586Q9BVV6 1533 aa24.28■■□□□ 1.48
USP28-209ENST00000540925 JPH4Q96JJ6 628 aa24.26■■□□□ 1.47
USP28-209ENST00000540925 PRG4Q92954 1404 aaPredicted RBP24.24■■□□□ 1.47
USP28-209ENST00000540925 TRHP20396 242 aaPredicted RBP24.19■■□□□ 1.46
USP28-209ENST00000540925 RAPGEF2Q9Y4G8 1499 aa24.19■■□□□ 1.46
USP28-209ENST00000540925 PRXQ9BXM0 1461 aa24.12■■□□□ 1.45
USP28-209ENST00000540925 IQGAP2Q13576 1575 aa24.09■■□□□ 1.45
USP28-209ENST00000540925 UGGT2Q9NYU1 1516 aa24■■□□□ 1.43
USP28-209ENST00000540925 EEA1Q15075 1411 aa23.99■■□□□ 1.43
USP28-209ENST00000540925 DISP1Q96F81 1524 aa23.99■■□□□ 1.43
USP28-209ENST00000540925 CARMIL2Q6F5E8 1435 aa23.96■■□□□ 1.43
USP28-209ENST00000540925 CHIC1Q5VXU3 224 aa23.96■■□□□ 1.43
USP28-209ENST00000540925 CTTNBP2Q8WZ74 1663 aa23.95■■□□□ 1.43
USP28-209ENST00000540925 CSRNP3Q8WYN3 585 aa23.95■■□□□ 1.42
USP28-209ENST00000540925 ADCY10Q96PN6 1610 aa23.94■■□□□ 1.42
USP28-209ENST00000540925 TNIKQ9UKE5 1360 aa23.93■■□□□ 1.42
USP28-209ENST00000540925 AEBP2Q6ZN18 517 aaPredicted RBP23.91■■□□□ 1.42
USP28-209ENST00000540925 PTPRGP23470 1445 aa23.91■■□□□ 1.42
USP28-209ENST00000540925 KIAA0556O60303 1618 aa23.88■■□□□ 1.41
USP28-209ENST00000540925 MAPKBP1O60336 1514 aa23.84■■□□□ 1.41
USP28-209ENST00000540925 UHRF1BP1LA0JNW5 1464 aa23.81■■□□□ 1.4
USP28-209ENST00000540925 GOLGA3Q08378 1498 aa23.79■■□□□ 1.4
USP28-209ENST00000540925 KIF21BO75037 1637 aa23.77■■□□□ 1.4
USP28-209ENST00000540925 ABCC2Q92887 1545 aa23.77■■□□□ 1.4
USP28-209ENST00000540925 UACAQ9BZF9 1416 aa23.76■■□□□ 1.39
USP28-209ENST00000540925 KIF13AQ9H1H9 1805 aa23.76■■□□□ 1.39
USP28-209ENST00000540925 NPM1P06748 294 aaKnown RBP eCLIP23.74■■□□□ 1.39
USP28-209ENST00000540925 FAM9AQ8IZU1 332 aaPredicted RBP23.74■■□□□ 1.39
USP28-209ENST00000540925 ABCC10Q5T3U5 1492 aa23.74■■□□□ 1.39
USP28-209ENST00000540925 TTBK1Q5TCY1 1321 aaPredicted RBP23.71■■□□□ 1.39
USP28-209ENST00000540925 SAMD9Q5K651 1589 aa23.7■■□□□ 1.38
USP28-209ENST00000540925 DIP2BQ9P265 1576 aa23.69■■□□□ 1.38
USP28-209ENST00000540925 KDM5BQ9UGL1 1544 aa23.69■■□□□ 1.38
USP28-209ENST00000540925 ABCA8O94911 1581 aa23.66■■□□□ 1.38
USP28-209ENST00000540925 PLB1Q6P1J6 1458 aa23.66■■□□□ 1.38
USP28-209ENST00000540925 ASXL2Q76L83 1435 aa23.61■■□□□ 1.37
USP28-209ENST00000540925 ZCCHC11Q5TAX3 1644 aaKnown RBP23.6■■□□□ 1.37
USP28-209ENST00000540925 FAM69CQ0P6D2 419 aa23.6■■□□□ 1.37
USP28-209ENST00000540925 GLI2P10070 1586 aa23.55■■□□□ 1.36
USP28-209ENST00000540925 P3H3Q8IVL6 736 aa23.53■■□□□ 1.36
USP28-209ENST00000540925 EFCAB5A4FU69 1503 aa23.53■■□□□ 1.36
USP28-209ENST00000540925 EPRSP07814 1512 aaKnown RBP23.5■■□□□ 1.35
USP28-209ENST00000540925 FHOD3Q2V2M9 1422 aa23.49■■□□□ 1.35
USP28-209ENST00000540925 WDR7Q9Y4E6 1490 aa23.48■■□□□ 1.35
USP28-209ENST00000540925 RAPGEF6Q8TEU7 1601 aa23.45■■□□□ 1.34
USP28-209ENST00000540925 ATP10BO94823 1461 aa23.44■■□□□ 1.34
USP28-209ENST00000540925 UBTFP17480 764 aaKnown RBP23.43■■□□□ 1.34
USP28-209ENST00000540925 PPRC1Q5VV67 1664 aaKnown RBP23.43■■□□□ 1.34
USP28-209ENST00000540925 MAP3K4Q9Y6R4 1608 aa23.42■■□□□ 1.34
USP28-209ENST00000540925 RANGAP1P46060 587 aaPredicted RBP23.41■■□□□ 1.34
USP28-209ENST00000540925 NUP153P49790 1475 aaKnown RBP23.41■■□□□ 1.34
USP28-209ENST00000540925 TSPOAP1O95153 1857 aa23.4■■□□□ 1.34
USP28-209ENST00000540925 ARHGAP35Q9NRY4 1499 aa23.39■■□□□ 1.34
USP28-209ENST00000540925 EHMT2Q96KQ7 1210 aa23.39■■□□□ 1.33
USP28-209ENST00000540925 KDM6BO15054 1643 aa23.3■■□□□ 1.32
USP28-209ENST00000540925 CFAP43Q8NDM7 1665 aa23.3■■□□□ 1.32
USP28-209ENST00000540925 ARID3CA6NKF2 412 aa23.3■■□□□ 1.32
USP28-209ENST00000540925 FMN1Q68DA7 1419 aa23.27■■□□□ 1.32
USP28-209ENST00000540925 MAGI3Q5TCQ9 1506 aa23.27■■□□□ 1.32
USP28-209ENST00000540925 TEX14Q8IWB6 1497 aa23.26■■□□□ 1.31
USP28-209ENST00000540925 KCNH8Q96L42 1107 aa23.25■■□□□ 1.31
USP28-209ENST00000540925 CD109Q6YHK3 1445 aa23.25■■□□□ 1.31
USP28-209ENST00000540925 ABCA9Q8IUA7 1624 aa23.24■■□□□ 1.31
USP28-209ENST00000540925 COL17A1Q9UMD9 1497 aaPredicted RBP23.24■■□□□ 1.31
USP28-209ENST00000540925 HECW1Q76N89 1606 aa23.19■■□□□ 1.3
USP28-209ENST00000540925 CDK13Q14004 1512 aaKnown RBP23.18■■□□□ 1.3
USP28-209ENST00000540925 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.15■■□□□ 1.3
USP28-209ENST00000540925 HNRNPUL2Q1KMD3 747 aaKnown RBP23.15■■□□□ 1.3
USP28-209ENST00000540925 CLIP1P30622 1438 aa23.14■■□□□ 1.29
USP28-209ENST00000540925 PLEKHD1A6NEE1 506 aa23.13■■□□□ 1.29
USP28-209ENST00000540925 LRRIQ1Q96JM4 1722 aa23.11■■□□□ 1.29
USP28-209ENST00000540925 CASKIN1Q8WXD9 1431 aa23.1■■□□□ 1.29
USP28-209ENST00000540925 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.09■■□□□ 1.29
USP28-209ENST00000540925 PCF11O94913 1555 aaKnown RBP23.09■■□□□ 1.29
USP28-209ENST00000540925 ARAP3Q8WWN8 1544 aa23.08■■□□□ 1.29
USP28-209ENST00000540925 KDM4FA0A1W2PPD8 638 aa23.07■■□□□ 1.28
USP28-209ENST00000540925 TTC37Q6PGP7 1564 aa23.06■■□□□ 1.28
USP28-209ENST00000540925 NEO1Q92859 1461 aa23.05■■□□□ 1.28
USP28-209ENST00000540925 PHLDB1Q86UU1 1377 aa23.05■■□□□ 1.28
USP28-209ENST00000540925 FYCO1Q9BQS8 1478 aa23.04■■□□□ 1.28
USP28-209ENST00000540925 CCDC18Q5T9S5 1454 aa23.01■■□□□ 1.27
USP28-209ENST00000540925 ILDR1Q86SU0 546 aaPredicted RBP23.01■■□□□ 1.27
USP28-209ENST00000540925 ATP1B4Q9UN42 357 aaPredicted RBP23.01■■□□□ 1.27
USP28-209ENST00000540925 TROQ12816 1431 aaPredicted RBP23■■□□□ 1.27
USP28-209ENST00000540925 CEP162Q5TB80 1403 aa23■■□□□ 1.27
USP28-209ENST00000540925 CDK11AQ9UQ88 783 aaPredicted RBP22.98■■□□□ 1.27
USP28-209ENST00000540925 KIF14Q15058 1648 aa22.97■■□□□ 1.27
USP28-209ENST00000540925 FRMPD1Q5SYB0 1578 aa22.94■■□□□ 1.26
USP28-209ENST00000540925 FANCAO15360 1455 aa22.94■■□□□ 1.26
USP28-209ENST00000540925 PLCH2O75038 1416 aa22.94■■□□□ 1.26
USP28-209ENST00000540925 LOC105371045A0A1W2PR82 267 aa22.93■■□□□ 1.26
USP28-209ENST00000540925 CFAP74Q9C0B2 1584 aa22.93■■□□□ 1.26
USP28-209ENST00000540925 AKNAQ7Z591 1439 aa22.91■■□□□ 1.26
USP28-209ENST00000540925 MYO5CQ9NQX4 1742 aa22.88■■□□□ 1.25
USP28-209ENST00000540925 RAPGEF3O95398 923 aa22.87■■□□□ 1.25
USP28-209ENST00000540925 RICTORQ6R327 1708 aa22.87■■□□□ 1.25
USP28-209ENST00000540925 DENND4BO75064 1496 aaPredicted RBP22.85■■□□□ 1.25
USP28-209ENST00000540925 ADGRL1O94910 1474 aa22.81■■□□□ 1.24
USP28-209ENST00000540925 ZMYM4Q5VZL5 1548 aa22.81■■□□□ 1.24
USP28-209ENST00000540925 CDC42BPBQ9Y5S2 1711 aa22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms