RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 CYB5RLQ6IPT4 315 aa15.57■□□□□ 0.08
SNHG1-215ENST00000540904 CUL7Q14999 1698 aa15.57■□□□□ 0.08
SNHG1-215ENST00000540904 ARAP1Q96P48 1450 aa15.52■□□□□ 0.08
SNHG1-215ENST00000540904 JPH4Q96JJ6 628 aa15.5■□□□□ 0.07
SNHG1-215ENST00000540904 RAPGEF2Q9Y4G8 1499 aa15.47■□□□□ 0.07
SNHG1-215ENST00000540904 KIAA0586Q9BVV6 1533 aa15.47■□□□□ 0.07
SNHG1-215ENST00000540904 ERCC6L2Q5T890 1561 aa15.46■□□□□ 0.07
SNHG1-215ENST00000540904 PRG4Q92954 1404 aaPredicted RBP15.46■□□□□ 0.07
SNHG1-215ENST00000540904 SHROOM2Q13796 1616 aa15.45■□□□□ 0.06
SNHG1-215ENST00000540904 FAM9AQ8IZU1 332 aaPredicted RBP15.43■□□□□ 0.06
SNHG1-215ENST00000540904 CSRNP3Q8WYN3 585 aa15.43■□□□□ 0.06
SNHG1-215ENST00000540904 PRXQ9BXM0 1461 aa15.41■□□□□ 0.06
SNHG1-215ENST00000540904 EEA1Q15075 1411 aa15.4■□□□□ 0.06
SNHG1-215ENST00000540904 IQGAP2Q13576 1575 aa15.36■□□□□ 0.05
SNHG1-215ENST00000540904 TTBK1Q5TCY1 1321 aaPredicted RBP15.32■□□□□ 0.04
SNHG1-215ENST00000540904 CARMIL2Q6F5E8 1435 aa15.32■□□□□ 0.04
SNHG1-215ENST00000540904 TRHP20396 242 aaPredicted RBP15.28■□□□□ 0.04
SNHG1-215ENST00000540904 UGGT2Q9NYU1 1516 aa15.27■□□□□ 0.04
SNHG1-215ENST00000540904 PTPRGP23470 1445 aa15.27■□□□□ 0.04
SNHG1-215ENST00000540904 TNIKQ9UKE5 1360 aa15.27■□□□□ 0.04
SNHG1-215ENST00000540904 DISP1Q96F81 1524 aa15.27■□□□□ 0.03
SNHG1-215ENST00000540904 POTEDQ86YR6 584 aa15.26■□□□□ 0.03
SNHG1-215ENST00000540904 EHMT2Q96KQ7 1210 aa15.26■□□□□ 0.03
SNHG1-215ENST00000540904 CTTNBP2Q8WZ74 1663 aa15.25■□□□□ 0.03
SNHG1-215ENST00000540904 MSH5O43196 834 aa15.23■□□□□ 0.03
SNHG1-215ENST00000540904 KIF21BO75037 1637 aa15.21■□□□□ 0.03
SNHG1-215ENST00000540904 NPM1P06748 294 aaKnown RBP eCLIP15.21■□□□□ 0.03
SNHG1-215ENST00000540904 RANGAP1P46060 587 aaPredicted RBP15.21■□□□□ 0.03
SNHG1-215ENST00000540904 KIAA0556O60303 1618 aa15.21■□□□□ 0.02
SNHG1-215ENST00000540904 GOLGA3Q08378 1498 aa15.2■□□□□ 0.02
SNHG1-215ENST00000540904 UBTFP17480 764 aaKnown RBP15.19■□□□□ 0.02
SNHG1-215ENST00000540904 P3H3Q8IVL6 736 aa15.19■□□□□ 0.02
SNHG1-215ENST00000540904 ADCY10Q96PN6 1610 aa15.18■□□□□ 0.02
SNHG1-215ENST00000540904 UACAQ9BZF9 1416 aa15.16■□□□□ 0.02
SNHG1-215ENST00000540904 UHRF1BP1LA0JNW5 1464 aa15.12■□□□□ 0.01
SNHG1-215ENST00000540904 PLB1Q6P1J6 1458 aa15.11■□□□□ 0.01
SNHG1-215ENST00000540904 ABCC2Q92887 1545 aa15.11■□□□□ 0.01
SNHG1-215ENST00000540904 SAMD9Q5K651 1589 aa15.08■□□□□ 0
SNHG1-215ENST00000540904 MAPKBP1O60336 1514 aa15.07■□□□□ 0
SNHG1-215ENST00000540904 FHOD3Q2V2M9 1422 aa15.07■□□□□ 0
SNHG1-215ENST00000540904 FAM69CQ0P6D2 419 aa15.06■□□□□ 0
SNHG1-215ENST00000540904 PIAS4Q8N2W9 510 aaPredicted RBP15.05■□□□□ -0
SNHG1-215ENST00000540904 KDM5BQ9UGL1 1544 aa15.05■□□□□ -0
SNHG1-215ENST00000540904 ABCA8O94911 1581 aa15.05■□□□□ -0
SNHG1-215ENST00000540904 ABCC10Q5T3U5 1492 aa15.04■□□□□ -0
SNHG1-215ENST00000540904 ASXL2Q76L83 1435 aa15.04■□□□□ -0
SNHG1-215ENST00000540904 EFCAB5A4FU69 1503 aa15.03■□□□□ -0
SNHG1-215ENST00000540904 ARID3CA6NKF2 412 aa15.03■□□□□ -0
SNHG1-215ENST00000540904 PLPPR3Q6T4P5 718 aa15.02■□□□□ -0
SNHG1-215ENST00000540904 ZCCHC11Q5TAX3 1644 aaKnown RBP14.99□□□□□ -0.01
SNHG1-215ENST00000540904 ARHGAP35Q9NRY4 1499 aa14.99□□□□□ -0.01
SNHG1-215ENST00000540904 DIP2BQ9P265 1576 aa14.98□□□□□ -0.01
SNHG1-215ENST00000540904 KIF13AQ9H1H9 1805 aa14.96□□□□□ -0.01
SNHG1-215ENST00000540904 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.96□□□□□ -0.01
SNHG1-215ENST00000540904 HNRNPUL2Q1KMD3 747 aaKnown RBP14.96□□□□□ -0.01
SNHG1-215ENST00000540904 RAPGEF6Q8TEU7 1601 aa14.95□□□□□ -0.02
SNHG1-215ENST00000540904 ATP10BO94823 1461 aa14.95□□□□□ -0.02
SNHG1-215ENST00000540904 WDR7Q9Y4E6 1490 aa14.95□□□□□ -0.02
SNHG1-215ENST00000540904 KCNH8Q96L42 1107 aa14.94□□□□□ -0.02
SNHG1-215ENST00000540904 NUP153P49790 1475 aaKnown RBP14.94□□□□□ -0.02
SNHG1-215ENST00000540904 EPRSP07814 1512 aaKnown RBP14.93□□□□□ -0.02
SNHG1-215ENST00000540904 ATP1B4Q9UN42 357 aaPredicted RBP14.93□□□□□ -0.02
SNHG1-215ENST00000540904 PPP6R1Q9UPN7 881 aa14.93□□□□□ -0.02
SNHG1-215ENST00000540904 FMN1Q68DA7 1419 aa14.92□□□□□ -0.02
SNHG1-215ENST00000540904 LOC105371045A0A1W2PR82 267 aa14.92□□□□□ -0.02
SNHG1-215ENST00000540904 CLIP1P30622 1438 aa14.92□□□□□ -0.02
SNHG1-215ENST00000540904 GLI2P10070 1586 aa14.9□□□□□ -0.02
SNHG1-215ENST00000540904 ADRA2BP18089 450 aa14.89□□□□□ -0.03
SNHG1-215ENST00000540904 PLEKHD1A6NEE1 506 aa14.86□□□□□ -0.03
SNHG1-215ENST00000540904 TSPOAP1O95153 1857 aa14.84□□□□□ -0.03
SNHG1-215ENST00000540904 CDK13Q14004 1512 aaKnown RBP14.84□□□□□ -0.03
SNHG1-215ENST00000540904 CEP162Q5TB80 1403 aa14.83□□□□□ -0.03
SNHG1-215ENST00000540904 HECW1Q76N89 1606 aa14.83□□□□□ -0.04
SNHG1-215ENST00000540904 CD109Q6YHK3 1445 aa14.83□□□□□ -0.04
SNHG1-215ENST00000540904 MAP3K4Q9Y6R4 1608 aa14.82□□□□□ -0.04
SNHG1-215ENST00000540904 CASKIN1Q8WXD9 1431 aa14.8□□□□□ -0.04
SNHG1-215ENST00000540904 TEX14Q8IWB6 1497 aa14.79□□□□□ -0.04
SNHG1-215ENST00000540904 CDK11AQ9UQ88 783 aaPredicted RBP14.79□□□□□ -0.04
SNHG1-215ENST00000540904 PPRC1Q5VV67 1664 aaKnown RBP14.78□□□□□ -0.04
SNHG1-215ENST00000540904 PCF11O94913 1555 aaKnown RBP14.78□□□□□ -0.04
SNHG1-215ENST00000540904 CFAP43Q8NDM7 1665 aa14.77□□□□□ -0.05
SNHG1-215ENST00000540904 MAGI3Q5TCQ9 1506 aa14.76□□□□□ -0.05
SNHG1-215ENST00000540904 KDM6BO15054 1643 aa14.76□□□□□ -0.05
SNHG1-215ENST00000540904 FYCO1Q9BQS8 1478 aa14.76□□□□□ -0.05
SNHG1-215ENST00000540904 ABCA9Q8IUA7 1624 aa14.74□□□□□ -0.05
SNHG1-215ENST00000540904 CCDC18Q5T9S5 1454 aa14.74□□□□□ -0.05
SNHG1-215ENST00000540904 COL17A1Q9UMD9 1497 aaPredicted RBP14.72□□□□□ -0.05
SNHG1-215ENST00000540904 TROQ12816 1431 aaPredicted RBP14.72□□□□□ -0.05
SNHG1-215ENST00000540904 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.71□□□□□ -0.05
SNHG1-215ENST00000540904 LRRIQ1Q96JM4 1722 aa14.7□□□□□ -0.06
SNHG1-215ENST00000540904 TTC37Q6PGP7 1564 aa14.68□□□□□ -0.06
SNHG1-215ENST00000540904 NEO1Q92859 1461 aa14.66□□□□□ -0.06
SNHG1-215ENST00000540904 PHLDB1Q86UU1 1377 aa14.66□□□□□ -0.06
SNHG1-215ENST00000540904 KIF14Q15058 1648 aa14.66□□□□□ -0.06
SNHG1-215ENST00000540904 VPS8Q8N3P4 1428 aa14.66□□□□□ -0.06
SNHG1-215ENST00000540904 FANCAO15360 1455 aa14.64□□□□□ -0.07
SNHG1-215ENST00000540904 ARAP3Q8WWN8 1544 aa14.64□□□□□ -0.07
SNHG1-215ENST00000540904 PLCH2O75038 1416 aa14.64□□□□□ -0.07
SNHG1-215ENST00000540904 MTUS2Q5JR59 1369 aa14.63□□□□□ -0.07
SNHG1-215ENST00000540904 RAPGEF3O95398 923 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms