RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 FAM9AQ8IZU1 332 aaPredicted RBP17.45■□□□□ 0.38
VPS33A-204ENST00000540669 SHROOM2Q13796 1616 aa17.44■□□□□ 0.38
VPS33A-204ENST00000540669 KIAA0586Q9BVV6 1533 aa17.42■□□□□ 0.38
VPS33A-204ENST00000540669 IQGAP2Q13576 1575 aa17.4■□□□□ 0.38
VPS33A-204ENST00000540669 UGGT2Q9NYU1 1516 aa17.37■□□□□ 0.37
VPS33A-204ENST00000540669 DNAJC5Q9H3Z4 198 aa17.37■□□□□ 0.37
VPS33A-204ENST00000540669 TNIKQ9UKE5 1360 aa17.37■□□□□ 0.37
VPS33A-204ENST00000540669 SAMD9Q5K651 1589 aa17.36■□□□□ 0.37
VPS33A-204ENST00000540669 CHMP7Q8WUX9 453 aaPredicted RBP17.35■□□□□ 0.37
VPS33A-204ENST00000540669 EFCAB5A4FU69 1503 aa17.3■□□□□ 0.36
VPS33A-204ENST00000540669 FOXD1Q16676 465 aa17.29■□□□□ 0.36
VPS33A-204ENST00000540669 OSCARQ8IYS5 282 aa17.29■□□□□ 0.36
VPS33A-204ENST00000540669 DISP1Q96F81 1524 aa17.27■□□□□ 0.36
VPS33A-204ENST00000540669 KIAA0556O60303 1618 aa17.27■□□□□ 0.36
VPS33A-204ENST00000540669 FBLN2P98095 1184 aa17.24■□□□□ 0.35
VPS33A-204ENST00000540669 ARHGAP35Q9NRY4 1499 aa17.24■□□□□ 0.35
VPS33A-204ENST00000540669 CEP162Q5TB80 1403 aa17.23■□□□□ 0.35
VPS33A-204ENST00000540669 LOC105371045A0A1W2PR82 267 aa17.23■□□□□ 0.35
VPS33A-204ENST00000540669 ERCC6L2Q5T890 1561 aa17.21■□□□□ 0.35
VPS33A-204ENST00000540669 CLIP1P30622 1438 aa17.18■□□□□ 0.34
VPS33A-204ENST00000540669 ARAP1Q96P48 1450 aa17.18■□□□□ 0.34
VPS33A-204ENST00000540669 UBTFP17480 764 aaKnown RBP17.16■□□□□ 0.34
VPS33A-204ENST00000540669 PRG4Q92954 1404 aaPredicted RBP17.14■□□□□ 0.33
VPS33A-204ENST00000540669 ARHGEF11O15085 1522 aa17.13■□□□□ 0.33
VPS33A-204ENST00000540669 JPH4Q96JJ6 628 aa17.13■□□□□ 0.33
VPS33A-204ENST00000540669 RIMBP3CA6NJZ7 1639 aa17.1■□□□□ 0.33
VPS33A-204ENST00000540669 RIMBP3BA6NNM3 1639 aa17.1■□□□□ 0.33
VPS33A-204ENST00000540669 RIMBP3Q9UFD9 1639 aa17.1■□□□□ 0.33
VPS33A-204ENST00000540669 CARMIL2Q6F5E8 1435 aa17.1■□□□□ 0.33
VPS33A-204ENST00000540669 FHOD3Q2V2M9 1422 aa17.08■□□□□ 0.32
VPS33A-204ENST00000540669 EHMT2Q96KQ7 1210 aa17.08■□□□□ 0.32
VPS33A-204ENST00000540669 ABCA8O94911 1581 aa17.06■□□□□ 0.32
VPS33A-204ENST00000540669 PCF11O94913 1555 aaKnown RBP17.05■□□□□ 0.32
VPS33A-204ENST00000540669 VPS8Q8N3P4 1428 aa17.03■□□□□ 0.32
VPS33A-204ENST00000540669 FMN1Q68DA7 1419 aa17.02■□□□□ 0.31
VPS33A-204ENST00000540669 LRRIQ1Q96JM4 1722 aa17.01■□□□□ 0.31
VPS33A-204ENST00000540669 RAPGEF6Q8TEU7 1601 aa17.01■□□□□ 0.31
VPS33A-204ENST00000540669 UHRF1BP1LA0JNW5 1464 aa17■□□□□ 0.31
VPS33A-204ENST00000540669 FYCO1Q9BQS8 1478 aa17■□□□□ 0.31
VPS33A-204ENST00000540669 CASKIN1Q8WXD9 1431 aa16.98■□□□□ 0.31
VPS33A-204ENST00000540669 ABCC2Q92887 1545 aa16.98■□□□□ 0.31
VPS33A-204ENST00000540669 HECW1Q76N89 1606 aa16.97■□□□□ 0.31
VPS33A-204ENST00000540669 ADCY10Q96PN6 1610 aa16.97■□□□□ 0.31
VPS33A-204ENST00000540669 NUP153P49790 1475 aaKnown RBP16.96■□□□□ 0.31
VPS33A-204ENST00000540669 PLB1Q6P1J6 1458 aa16.96■□□□□ 0.31
VPS33A-204ENST00000540669 CFAP43Q8NDM7 1665 aa16.96■□□□□ 0.31
VPS33A-204ENST00000540669 PTPRGP23470 1445 aa16.96■□□□□ 0.3
VPS33A-204ENST00000540669 MAP3K1Q13233 1512 aa16.92■□□□□ 0.3
VPS33A-204ENST00000540669 UACAQ9BZF9 1416 aa16.92■□□□□ 0.3
VPS33A-204ENST00000540669 KDM5BQ9UGL1 1544 aa16.91■□□□□ 0.3
VPS33A-204ENST00000540669 EPRSP07814 1512 aaKnown RBP16.88■□□□□ 0.29
VPS33A-204ENST00000540669 P3H3Q8IVL6 736 aa16.88■□□□□ 0.29
VPS33A-204ENST00000540669 CCDC18Q5T9S5 1454 aa16.87■□□□□ 0.29
VPS33A-204ENST00000540669 TIAM1Q13009 1591 aa16.87■□□□□ 0.29
VPS33A-204ENST00000540669 ZCCHC11Q5TAX3 1644 aaKnown RBP16.87■□□□□ 0.29
VPS33A-204ENST00000540669 RANGAP1P46060 587 aaPredicted RBP16.86■□□□□ 0.29
VPS33A-204ENST00000540669 CDK13Q14004 1512 aaKnown RBP16.83■□□□□ 0.28
VPS33A-204ENST00000540669 ATP10BO94823 1461 aa16.82■□□□□ 0.28
VPS33A-204ENST00000540669 MAGI3Q5TCQ9 1506 aa16.81■□□□□ 0.28
VPS33A-204ENST00000540669 CYB5RLQ6IPT4 315 aa16.81■□□□□ 0.28
VPS33A-204ENST00000540669 MAPKBP1O60336 1514 aa16.8■□□□□ 0.28
VPS33A-204ENST00000540669 EHBP1L1Q8N3D4 1523 aa16.76■□□□□ 0.27
VPS33A-204ENST00000540669 LRRC9Q6ZRR7 1453 aa16.73■□□□□ 0.27
VPS33A-204ENST00000540669 ADRA2BP18089 450 aa16.73■□□□□ 0.27
VPS33A-204ENST00000540669 PPP6R1Q9UPN7 881 aa16.72■□□□□ 0.27
VPS33A-204ENST00000540669 TROQ12816 1431 aaPredicted RBP16.7■□□□□ 0.26
VPS33A-204ENST00000540669 WDR7Q9Y4E6 1490 aa16.7■□□□□ 0.26
VPS33A-204ENST00000540669 KIF14Q15058 1648 aa16.69■□□□□ 0.26
VPS33A-204ENST00000540669 ASXL2Q76L83 1435 aa16.67■□□□□ 0.26
VPS33A-204ENST00000540669 ABCC10Q5T3U5 1492 aa16.67■□□□□ 0.26
VPS33A-204ENST00000540669 SUPT6HQ7KZ85 1726 aaKnown RBP16.66■□□□□ 0.26
VPS33A-204ENST00000540669 DIP2BQ9P265 1576 aa16.66■□□□□ 0.26
VPS33A-204ENST00000540669 ABCA9Q8IUA7 1624 aa16.66■□□□□ 0.26
VPS33A-204ENST00000540669 TTBK1Q5TCY1 1321 aaPredicted RBP16.66■□□□□ 0.26
VPS33A-204ENST00000540669 GLI2P10070 1586 aa16.65■□□□□ 0.26
VPS33A-204ENST00000540669 TTC37Q6PGP7 1564 aa16.64■□□□□ 0.25
VPS33A-204ENST00000540669 KIF13AQ9H1H9 1805 aa16.63■□□□□ 0.25
VPS33A-204ENST00000540669 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.62■□□□□ 0.25
VPS33A-204ENST00000540669 NPM1P06748 294 aaKnown RBP eCLIP16.62■□□□□ 0.25
VPS33A-204ENST00000540669 CDC42BPAQ5VT25 1732 aa16.61■□□□□ 0.25
VPS33A-204ENST00000540669 NCOA2Q15596 1464 aa16.61■□□□□ 0.25
VPS33A-204ENST00000540669 ARAP3Q8WWN8 1544 aa16.6■□□□□ 0.25
VPS33A-204ENST00000540669 PREX2Q70Z35 1606 aa16.6■□□□□ 0.25
VPS33A-204ENST00000540669 MAP3K4Q9Y6R4 1608 aa16.6■□□□□ 0.25
VPS33A-204ENST00000540669 KANK4Q5T7N3 995 aaPredicted RBP16.6■□□□□ 0.25
VPS33A-204ENST00000540669 MTUS2Q5JR59 1369 aa16.58■□□□□ 0.24
VPS33A-204ENST00000540669 ITSN2Q9NZM3 1697 aa16.58■□□□□ 0.24
VPS33A-204ENST00000540669 TRHP20396 242 aaPredicted RBP16.57■□□□□ 0.24
VPS33A-204ENST00000540669 MYO5CQ9NQX4 1742 aa16.56■□□□□ 0.24
VPS33A-204ENST00000540669 PPRC1Q5VV67 1664 aaKnown RBP16.56■□□□□ 0.24
VPS33A-204ENST00000540669 CDC42BPBQ9Y5S2 1711 aa16.55■□□□□ 0.24
VPS33A-204ENST00000540669 ARID3CA6NKF2 412 aa16.54■□□□□ 0.24
VPS33A-204ENST00000540669 CDK11AQ9UQ88 783 aaPredicted RBP16.54■□□□□ 0.24
VPS33A-204ENST00000540669 GPATCH8Q9UKJ3 1502 aaKnown RBP16.53■□□□□ 0.24
VPS33A-204ENST00000540669 PHLDB1Q86UU1 1377 aa16.51■□□□□ 0.23
VPS33A-204ENST00000540669 PLEKHD1A6NEE1 506 aa16.51■□□□□ 0.23
VPS33A-204ENST00000540669 ATP1B4Q9UN42 357 aaPredicted RBP16.51■□□□□ 0.23
VPS33A-204ENST00000540669 MYOM3Q5VTT5 1437 aa16.51■□□□□ 0.23
VPS33A-204ENST00000540669 RRBP1Q9P2E9 1410 aaKnown RBP16.49■□□□□ 0.23
VPS33A-204ENST00000540669 TCOF1Q13428 1488 aaKnown RBP16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms