RNA–Protein interactions for RNA: ENST00000539941.6

COPS3-212, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2 BASIC

Gene COPS3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-212ENST00000539941 SNAPC4Q5SXM2 1469 aa26.44■■□□□ 1.82
COPS3-212ENST00000539941 ARAP1Q96P48 1450 aa26.44■■□□□ 1.82
COPS3-212ENST00000539941 FBLN2P98095 1184 aa26.43■■□□□ 1.82
COPS3-212ENST00000539941 RANGAP1P46060 587 aaPredicted RBP26.42■■□□□ 1.82
COPS3-212ENST00000539941 EFCAB5A4FU69 1503 aa26.39■■□□□ 1.81
COPS3-212ENST00000539941 CHD1O14646 1710 aa26.35■■□□□ 1.81
COPS3-212ENST00000539941 SYNJ2O15056 1496 aa26.34■■□□□ 1.81
COPS3-212ENST00000539941 TRIM26Q12899 539 aaPredicted RBP26.34■■□□□ 1.81
COPS3-212ENST00000539941 GRIN2AQ12879 1464 aa26.32■■□□□ 1.8
COPS3-212ENST00000539941 CHMP7Q8WUX9 453 aaPredicted RBP26.31■■□□□ 1.8
COPS3-212ENST00000539941 RIMBP3CA6NJZ7 1639 aa26.28■■□□□ 1.8
COPS3-212ENST00000539941 RIMBP3BA6NNM3 1639 aa26.28■■□□□ 1.8
COPS3-212ENST00000539941 RIMBP3Q9UFD9 1639 aa26.28■■□□□ 1.8
COPS3-212ENST00000539941 IQGAP2Q13576 1575 aa26.26■■□□□ 1.79
COPS3-212ENST00000539941 ARHGEF11O15085 1522 aa26.26■■□□□ 1.79
COPS3-212ENST00000539941 SAMD9Q5K651 1589 aa26.26■■□□□ 1.79
COPS3-212ENST00000539941 PCGF6Q9BYE7 350 aa26.22■■□□□ 1.79
COPS3-212ENST00000539941 KIAA0586Q9BVV6 1533 aa26.22■■□□□ 1.79
COPS3-212ENST00000539941 APLP2Q06481 763 aa26.21■■□□□ 1.79
COPS3-212ENST00000539941 UGGT2Q9NYU1 1516 aa26.16■■□□□ 1.78
COPS3-212ENST00000539941 NUP160Q12769 1436 aa26.15■■□□□ 1.78
COPS3-212ENST00000539941 FHOD3Q2V2M9 1422 aa26.15■■□□□ 1.78
COPS3-212ENST00000539941 CYB5RLQ6IPT4 315 aa26.14■■□□□ 1.78
COPS3-212ENST00000539941 PPARGC1BQ86YN6 1023 aaKnown RBP26.14■■□□□ 1.78
COPS3-212ENST00000539941 CEP170Q5SW79 1584 aa26.13■■□□□ 1.77
COPS3-212ENST00000539941 FMN1Q68DA7 1419 aa26.13■■□□□ 1.77
COPS3-212ENST00000539941 CLASP1Q7Z460 1538 aa26.12■■□□□ 1.77
COPS3-212ENST00000539941 MAP3K1Q13233 1512 aa26.1■■□□□ 1.77
COPS3-212ENST00000539941 P3H3Q8IVL6 736 aa26.09■■□□□ 1.77
COPS3-212ENST00000539941 FYCO1Q9BQS8 1478 aa26.07■■□□□ 1.76
COPS3-212ENST00000539941 PCF11O94913 1555 aaKnown RBP26.06■■□□□ 1.76
COPS3-212ENST00000539941 CASKIN1Q8WXD9 1431 aa26.06■■□□□ 1.76
COPS3-212ENST00000539941 KIAA0556O60303 1618 aa26■■□□□ 1.75
COPS3-212ENST00000539941 TIAM1Q13009 1591 aa26■■□□□ 1.75
COPS3-212ENST00000539941 DISP1Q96F81 1524 aa25.98■■□□□ 1.75
COPS3-212ENST00000539941 CFAP43Q8NDM7 1665 aa25.97■■□□□ 1.75
COPS3-212ENST00000539941 TTBK1Q5TCY1 1321 aaPredicted RBP25.94■■□□□ 1.74
COPS3-212ENST00000539941 KANK4Q5T7N3 995 aaPredicted RBP25.9■■□□□ 1.74
COPS3-212ENST00000539941 JPH4Q96JJ6 628 aa25.9■■□□□ 1.74
COPS3-212ENST00000539941 CARMIL2Q6F5E8 1435 aa25.89■■□□□ 1.74
COPS3-212ENST00000539941 LRRC9Q6ZRR7 1453 aa25.87■■□□□ 1.73
COPS3-212ENST00000539941 HECW1Q76N89 1606 aa25.85■■□□□ 1.73
COPS3-212ENST00000539941 ATP1B4Q9UN42 357 aaPredicted RBP25.82■■□□□ 1.72
COPS3-212ENST00000539941 CCDC18Q5T9S5 1454 aa25.82■■□□□ 1.72
COPS3-212ENST00000539941 SHROOM2Q13796 1616 aa25.8■■□□□ 1.72
COPS3-212ENST00000539941 LRRIQ1Q96JM4 1722 aa25.79■■□□□ 1.72
COPS3-212ENST00000539941 PELP1Q8IZL8 1130 aaKnown RBP25.78■■□□□ 1.72
COPS3-212ENST00000539941 ERCC6L2Q5T890 1561 aa25.78■■□□□ 1.72
COPS3-212ENST00000539941 RAPGEF6Q8TEU7 1601 aa25.74■■□□□ 1.71
COPS3-212ENST00000539941 PRG4Q92954 1404 aaPredicted RBP25.73■■□□□ 1.71
COPS3-212ENST00000539941 EPRSP07814 1512 aaKnown RBP25.72■■□□□ 1.71
COPS3-212ENST00000539941 RRBP1Q9P2E9 1410 aaKnown RBP25.72■■□□□ 1.71
COPS3-212ENST00000539941 TRHP20396 242 aaPredicted RBP25.69■■□□□ 1.7
COPS3-212ENST00000539941 HRCP23327 699 aa25.69■■□□□ 1.7
COPS3-212ENST00000539941 EHBP1L1Q8N3D4 1523 aa25.69■■□□□ 1.7
COPS3-212ENST00000539941 MTUS2Q5JR59 1369 aa25.68■■□□□ 1.7
COPS3-212ENST00000539941 NUP153P49790 1475 aaKnown RBP25.65■■□□□ 1.7
COPS3-212ENST00000539941 ABCA8O94911 1581 aa25.63■■□□□ 1.69
COPS3-212ENST00000539941 PLB1Q6P1J6 1458 aa25.61■■□□□ 1.69
COPS3-212ENST00000539941 CCNB3Q8WWL7 1395 aa25.61■■□□□ 1.69
COPS3-212ENST00000539941 CDK13Q14004 1512 aaKnown RBP25.6■■□□□ 1.69
COPS3-212ENST00000539941 SUPT6HQ7KZ85 1726 aaKnown RBP25.6■■□□□ 1.69
COPS3-212ENST00000539941 PTPRGP23470 1445 aa25.59■■□□□ 1.69
COPS3-212ENST00000539941 PHLDB1Q86UU1 1377 aa25.59■■□□□ 1.69
COPS3-212ENST00000539941 MAGI3Q5TCQ9 1506 aa25.57■■□□□ 1.68
COPS3-212ENST00000539941 NCOA2Q15596 1464 aa25.54■■□□□ 1.68
COPS3-212ENST00000539941 CDK11AQ9UQ88 783 aaPredicted RBP25.52■■□□□ 1.68
COPS3-212ENST00000539941 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.49■■□□□ 1.67
COPS3-212ENST00000539941 MYOM3Q5VTT5 1437 aa25.47■■□□□ 1.67
COPS3-212ENST00000539941 UACAQ9BZF9 1416 aa25.47■■□□□ 1.67
COPS3-212ENST00000539941 HNRNPUL2Q1KMD3 747 aaKnown RBP25.46■■□□□ 1.67
COPS3-212ENST00000539941 FGD6Q6ZV73 1430 aa25.46■■□□□ 1.67
COPS3-212ENST00000539941 TROQ12816 1431 aaPredicted RBP25.44■■□□□ 1.66
COPS3-212ENST00000539941 ARID3CA6NKF2 412 aa25.43■■□□□ 1.66
COPS3-212ENST00000539941 ATP10BO94823 1461 aa25.42■■□□□ 1.66
COPS3-212ENST00000539941 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.41■■□□□ 1.66
COPS3-212ENST00000539941 ABCC2Q92887 1545 aa25.41■■□□□ 1.66
COPS3-212ENST00000539941 ADCY10Q96PN6 1610 aa25.39■■□□□ 1.66
COPS3-212ENST00000539941 UHRF1BP1LA0JNW5 1464 aa25.37■■□□□ 1.65
COPS3-212ENST00000539941 MIA2Q96PC5 1412 aa25.36■■□□□ 1.65
COPS3-212ENST00000539941 ZEB1P37275 1124 aaPredicted RBP25.34■■□□□ 1.65
COPS3-212ENST00000539941 FAM50AQ14320 339 aaKnown RBP25.34■■□□□ 1.65
COPS3-212ENST00000539941 PLEKHD1A6NEE1 506 aa25.32■■□□□ 1.64
COPS3-212ENST00000539941 TCOF1Q13428 1488 aaKnown RBP25.32■■□□□ 1.64
COPS3-212ENST00000539941 PTPN23Q9H3S7 1636 aa25.32■■□□□ 1.64
COPS3-212ENST00000539941 NPM1P06748 294 aaKnown RBP eCLIP25.3■■□□□ 1.64
COPS3-212ENST00000539941 KIF14Q15058 1648 aa25.28■■□□□ 1.64
COPS3-212ENST00000539941 ITSN2Q9NZM3 1697 aa25.26■■□□□ 1.63
COPS3-212ENST00000539941 CCER1Q8TC90 406 aaPredicted RBP25.25■■□□□ 1.63
COPS3-212ENST00000539941 KDM5BQ9UGL1 1544 aa25.25■■□□□ 1.63
COPS3-212ENST00000539941 ITGAEP38570 1179 aa25.23■■□□□ 1.63
COPS3-212ENST00000539941 ABCC10Q5T3U5 1492 aa25.21■■□□□ 1.63
COPS3-212ENST00000539941 ZCCHC11Q5TAX3 1644 aaKnown RBP25.2■■□□□ 1.62
COPS3-212ENST00000539941 GPATCH8Q9UKJ3 1502 aaKnown RBP25.19■■□□□ 1.62
COPS3-212ENST00000539941 MAPKBP1O60336 1514 aa25.17■■□□□ 1.62
COPS3-212ENST00000539941 FAM69CQ0P6D2 419 aa25.17■■□□□ 1.62
COPS3-212ENST00000539941 SETD5Q9C0A6 1442 aa25.15■■□□□ 1.62
COPS3-212ENST00000539941 KIF13AQ9H1H9 1805 aa25.14■■□□□ 1.62
COPS3-212ENST00000539941 CDC42BPAQ5VT25 1732 aa25.13■■□□□ 1.61
COPS3-212ENST00000539941 MYT1Q01538 1121 aa25.11■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 251 ms