RNA–Protein interactions for RNA: ENST00000539208.5

GNE-204, Transcript of glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase, humanhuman

TSL 2 BASIC

Gene GNE, Length 2,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GNE-204ENST00000539208 GAPVD1Q14C86 1478 aa26.76■■□□□ 1.87
GNE-204ENST00000539208 CCNB3Q8WWL7 1395 aa26.75■■□□□ 1.87
GNE-204ENST00000539208 LRRC9Q6ZRR7 1453 aa26.73■■□□□ 1.87
GNE-204ENST00000539208 TDRD9Q8NDG6 1382 aaKnown RBP26.73■■□□□ 1.87
GNE-204ENST00000539208 CLSPNQ9HAW4 1339 aa26.72■■□□□ 1.87
GNE-204ENST00000539208 CFAP43Q8NDM7 1665 aa26.72■■□□□ 1.87
GNE-204ENST00000539208 AQRO60306 1485 aaKnown RBP eCLIP26.71■■□□□ 1.878e-8■■■■■ 39.5
GNE-204ENST00000539208 TARBP1Q13395 1621 aaKnown RBP26.71■■□□□ 1.87
GNE-204ENST00000539208 PCF11O94913 1555 aaKnown RBP26.7■■□□□ 1.87
GNE-204ENST00000539208 FYCO1Q9BQS8 1478 aa26.68■■□□□ 1.86
GNE-204ENST00000539208 FHOD3Q2V2M9 1422 aa26.66■■□□□ 1.86
GNE-204ENST00000539208 CASKIN1Q8WXD9 1431 aa26.66■■□□□ 1.86
GNE-204ENST00000539208 DHX57Q6P158 1386 aaKnown RBP26.62■■□□□ 1.85
GNE-204ENST00000539208 P3H3Q8IVL6 736 aa26.61■■□□□ 1.85
GNE-204ENST00000539208 FMN1Q68DA7 1419 aa26.61■■□□□ 1.85
GNE-204ENST00000539208 ZNF316A6NFI3 1004 aaPredicted RBP26.6■■□□□ 1.85
GNE-204ENST00000539208 SAMD9Q5K651 1589 aa26.6■■□□□ 1.85
GNE-204ENST00000539208 MRC2Q9UBG0 1479 aa26.6■■□□□ 1.85
GNE-204ENST00000539208 DIEXFQ68CQ4 756 aaKnown RBP26.6■■□□□ 1.85
GNE-204ENST00000539208 PHLDB1Q86UU1 1377 aa26.54■■□□□ 1.84
GNE-204ENST00000539208 PBRM1Q86U86 1689 aa26.52■■□□□ 1.84
GNE-204ENST00000539208 SNAPC4Q5SXM2 1469 aa26.52■■□□□ 1.84
GNE-204ENST00000539208 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.44■■□□□ 1.82
GNE-204ENST00000539208 ATP1B4Q9UN42 357 aaPredicted RBP26.44■■□□□ 1.82
GNE-204ENST00000539208 THOC2Q8NI27 1593 aaKnown RBP26.43■■□□□ 1.82
GNE-204ENST00000539208 WDR62O43379 1518 aa26.43■■□□□ 1.82
GNE-204ENST00000539208 ADAMTS12P58397 1594 aa26.43■■□□□ 1.82
GNE-204ENST00000539208 GRIN2BQ13224 1484 aa26.42■■□□□ 1.82
GNE-204ENST00000539208 IFT140Q96RY7 1462 aa26.42■■□□□ 1.82
GNE-204ENST00000539208 ITGAEP38570 1179 aa26.39■■□□□ 1.82
GNE-204ENST00000539208 RAB3GAP2Q9H2M9 1393 aa26.39■■□□□ 1.81
GNE-204ENST00000539208 SETD5Q9C0A6 1442 aa26.38■■□□□ 1.81
GNE-204ENST00000539208 LRRIQ1Q96JM4 1722 aa26.34■■□□□ 1.81
GNE-204ENST00000539208 IQGAP2Q13576 1575 aa26.34■■□□□ 1.81
GNE-204ENST00000539208 FAM50AQ14320 339 aaKnown RBP26.31■■□□□ 1.8
GNE-204ENST00000539208 MTUS2Q5JR59 1369 aa26.3■■□□□ 1.8
GNE-204ENST00000539208 FGD6Q6ZV73 1430 aa26.28■■□□□ 1.8
GNE-204ENST00000539208 ZNF608Q9ULD9 1512 aaPredicted RBP26.26■■□□□ 1.8
GNE-204ENST00000539208 CCDC18Q5T9S5 1454 aa26.26■■□□□ 1.79
GNE-204ENST00000539208 EHBP1L1Q8N3D4 1523 aa26.25■■□□□ 1.79
GNE-204ENST00000539208 MAPKBP1O60336 1514 aa26.24■■□□□ 1.79
GNE-204ENST00000539208 UGGT2Q9NYU1 1516 aa26.24■■□□□ 1.79
GNE-204ENST00000539208 SUPT6HQ7KZ85 1726 aaKnown RBP26.22■■□□□ 1.79
GNE-204ENST00000539208 HECW1Q76N89 1606 aa26.21■■□□□ 1.79
GNE-204ENST00000539208 NCOA2Q15596 1464 aa26.21■■□□□ 1.79
GNE-204ENST00000539208 MYOM3Q5VTT5 1437 aa26.18■■□□□ 1.78
GNE-204ENST00000539208 ARHGEF11O15085 1522 aa26.18■■□□□ 1.78
GNE-204ENST00000539208 KIAA0586Q9BVV6 1533 aa26.17■■□□□ 1.78
GNE-204ENST00000539208 EIF4G3O43432 1585 aaKnown RBP26.17■■□□□ 1.78
GNE-204ENST00000539208 ERCC6Q03468 1493 aa26.16■■□□□ 1.78
GNE-204ENST00000539208 MAGI3Q5TCQ9 1506 aa26.12■■□□□ 1.77
GNE-204ENST00000539208 EPRSP07814 1512 aaKnown RBP26.11■■□□□ 1.77
GNE-204ENST00000539208 GRIN2AQ12879 1464 aa26.11■■□□□ 1.77
GNE-204ENST00000539208 ACIN1Q9UKV3 1341 aaKnown RBP26.1■■□□□ 1.77
GNE-204ENST00000539208 MAGI1Q96QZ7 1491 aaPredicted RBP26.08■■□□□ 1.77
GNE-204ENST00000539208 CENPBP07199 599 aaPredicted RBP26.08■■□□□ 1.77
GNE-204ENST00000539208 HFM1A2PYH4 1435 aa26.07■■□□□ 1.76
GNE-204ENST00000539208 SCAF1Q9H7N4 1312 aaKnown RBP26.06■■□□□ 1.76
GNE-204ENST00000539208 KIAA0556O60303 1618 aa26.06■■□□□ 1.76
GNE-204ENST00000539208 DISP1Q96F81 1524 aa26.05■■□□□ 1.76
GNE-204ENST00000539208 PTPN23Q9H3S7 1636 aa26.05■■□□□ 1.76
GNE-204ENST00000539208 PTPRKQ15262 1439 aa26.04■■□□□ 1.76
GNE-204ENST00000539208 MIER1Q8N108 512 aa26.04■■□□□ 1.76
GNE-204ENST00000539208 TIMELESSQ9UNS1 1208 aa26.04■■□□□ 1.76
GNE-204ENST00000539208 TCOF1Q13428 1488 aaKnown RBP26.04■■□□□ 1.76
GNE-204ENST00000539208 NEUROD1Q13562 356 aa26■■□□□ 1.75
GNE-204ENST00000539208 SYNJ2O15056 1496 aa25.99■■□□□ 1.75
GNE-204ENST00000539208 CDK13Q14004 1512 aaKnown RBP25.99■■□□□ 1.75
GNE-204ENST00000539208 MIA2Q96PC5 1412 aa25.97■■□□□ 1.75
GNE-204ENST00000539208 NAIPQ13075 1403 aa25.96■■□□□ 1.75
GNE-204ENST00000539208 UACAQ9BZF9 1416 aa25.95■■□□□ 1.75
GNE-204ENST00000539208 RAPGEF6Q8TEU7 1601 aa25.92■■□□□ 1.74
GNE-204ENST00000539208 CEP170Q5SW79 1584 aa25.92■■□□□ 1.74
GNE-204ENST00000539208 SIN3AQ96ST3 1273 aa25.91■■□□□ 1.74
GNE-204ENST00000539208 CHMP7Q8WUX9 453 aaPredicted RBP25.9■■□□□ 1.74
GNE-204ENST00000539208 AKNAQ7Z591 1439 aa25.9■■□□□ 1.74
GNE-204ENST00000539208 NUP153P49790 1475 aaKnown RBP25.9■■□□□ 1.74
GNE-204ENST00000539208 NUP160Q12769 1436 aa25.87■■□□□ 1.73
GNE-204ENST00000539208 GCC2Q8IWJ2 1684 aa25.85■■□□□ 1.73
GNE-204ENST00000539208 CDK11AQ9UQ88 783 aaPredicted RBP25.81■■□□□ 1.72
GNE-204ENST00000539208 PPP1R15AO75807 674 aaPredicted RBP25.79■■□□□ 1.72
GNE-204ENST00000539208 CARMIL2Q6F5E8 1435 aa25.79■■□□□ 1.72
GNE-204ENST00000539208 ARID3CA6NKF2 412 aa25.75■■□□□ 1.71
GNE-204ENST00000539208 JPH4Q96JJ6 628 aa25.74■■□□□ 1.71
GNE-204ENST00000539208 FBLN2P98095 1184 aa25.73■■□□□ 1.71
GNE-204ENST00000539208 TROQ12816 1431 aaPredicted RBP25.73■■□□□ 1.71
GNE-204ENST00000539208 ROCK1Q13464 1354 aa25.72■■□□□ 1.71
GNE-204ENST00000539208 YTHDC1Q96MU7 727 aaKnown RBP25.72■■□□□ 1.71
GNE-204ENST00000539208 RRP7BPQ9NSQ0 103 aa25.71■■□□□ 1.71
GNE-204ENST00000539208 PLB1Q6P1J6 1458 aa25.71■■□□□ 1.71
GNE-204ENST00000539208 DNMT1P26358 1616 aaKnown RBP25.7■■□□□ 1.7
GNE-204ENST00000539208 TONSLQ96HA7 1378 aa25.7■■□□□ 1.7
GNE-204ENST00000539208 CHIC2Q9UKJ5 165 aa25.7■■□□□ 1.7
GNE-204ENST00000539208 DAPK1P53355 1430 aa25.7■■□□□ 1.7
GNE-204ENST00000539208 ADCY10Q96PN6 1610 aa25.69■■□□□ 1.7
GNE-204ENST00000539208 GTF3C3Q9Y5Q9 886 aa25.68■■□□□ 1.7
GNE-204ENST00000539208 ABCC5O15440 1437 aa25.65■■□□□ 1.7
GNE-204ENST00000539208 PRG4Q92954 1404 aaPredicted RBP25.65■■□□□ 1.7
GNE-204ENST00000539208 KDM6BO15054 1643 aa25.65■■□□□ 1.7
GNE-204ENST00000539208 ITSN2Q9NZM3 1697 aa25.64■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms