RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 JPH4Q96JJ6 628 aa32.45■■■□□ 2.79
CLIP1-211ENST00000539080 KIAA0586Q9BVV6 1533 aa32.44■■■□□ 2.78
CLIP1-211ENST00000539080 PRG4Q92954 1404 aaPredicted RBP32.43■■■□□ 2.78
CLIP1-211ENST00000539080 RAPGEF2Q9Y4G8 1499 aa32.29■■■□□ 2.76
CLIP1-211ENST00000539080 TRHP20396 242 aaPredicted RBP32.24■■■□□ 2.75
CLIP1-211ENST00000539080 IQGAP2Q13576 1575 aa32.2■■■□□ 2.75
CLIP1-211ENST00000539080 CARMIL2Q6F5E8 1435 aa32.1■■■□□ 2.73
CLIP1-211ENST00000539080 PRXQ9BXM0 1461 aa32.09■■■□□ 2.73
CLIP1-211ENST00000539080 UGGT2Q9NYU1 1516 aa32.03■■■□□ 2.72
CLIP1-211ENST00000539080 CTTNBP2Q8WZ74 1663 aa32.02■■■□□ 2.72
CLIP1-211ENST00000539080 TNIKQ9UKE5 1360 aa32.01■■■□□ 2.71
CLIP1-211ENST00000539080 ADCY10Q96PN6 1610 aa32■■■□□ 2.71
CLIP1-211ENST00000539080 PTPRGP23470 1445 aa32■■■□□ 2.71
CLIP1-211ENST00000539080 EEA1Q15075 1411 aa32■■■□□ 2.71
CLIP1-211ENST00000539080 DISP1Q96F81 1524 aa31.98■■■□□ 2.71
CLIP1-211ENST00000539080 NPM1P06748 294 aaKnown RBP eCLIP31.94■■■□□ 2.7
CLIP1-211ENST00000539080 CSRNP3Q8WYN3 585 aa31.94■■■□□ 2.7
CLIP1-211ENST00000539080 MAPKBP1O60336 1514 aa31.9■■■□□ 2.7
CLIP1-211ENST00000539080 KIAA0556O60303 1618 aa31.9■■■□□ 2.7
CLIP1-211ENST00000539080 GOLGA3Q08378 1498 aa31.84■■■□□ 2.69
CLIP1-211ENST00000539080 UHRF1BP1LA0JNW5 1464 aa31.82■■■□□ 2.68
CLIP1-211ENST00000539080 KIF13AQ9H1H9 1805 aa31.82■■■□□ 2.68
CLIP1-211ENST00000539080 TTBK1Q5TCY1 1321 aaPredicted RBP31.8■■■□□ 2.68
CLIP1-211ENST00000539080 CHIC1Q5VXU3 224 aa31.79■■■□□ 2.68
CLIP1-211ENST00000539080 UACAQ9BZF9 1416 aa31.79■■■□□ 2.68
CLIP1-211ENST00000539080 ABCC2Q92887 1545 aa31.79■■■□□ 2.68
CLIP1-211ENST00000539080 ABCC10Q5T3U5 1492 aa31.78■■■□□ 2.68
CLIP1-211ENST00000539080 DIP2BQ9P265 1576 aa31.72■■■□□ 2.67
CLIP1-211ENST00000539080 KIF21BO75037 1637 aa31.67■■■□□ 2.66
CLIP1-211ENST00000539080 FAM69CQ0P6D2 419 aa31.66■■■□□ 2.66
CLIP1-211ENST00000539080 FAM9AQ8IZU1 332 aaPredicted RBP31.66■■■□□ 2.66
CLIP1-211ENST00000539080 KDM5BQ9UGL1 1544 aa31.65■■■□□ 2.66
CLIP1-211ENST00000539080 PLB1Q6P1J6 1458 aa31.61■■■□□ 2.65
CLIP1-211ENST00000539080 SAMD9Q5K651 1589 aa31.6■■■□□ 2.65
CLIP1-211ENST00000539080 ASXL2Q76L83 1435 aa31.59■■■□□ 2.65
CLIP1-211ENST00000539080 ZCCHC11Q5TAX3 1644 aaKnown RBP31.57■■■□□ 2.64
CLIP1-211ENST00000539080 ABCA8O94911 1581 aa31.57■■■□□ 2.64
CLIP1-211ENST00000539080 GLI2P10070 1586 aa31.51■■■□□ 2.63
CLIP1-211ENST00000539080 P3H3Q8IVL6 736 aa31.45■■■□□ 2.63
CLIP1-211ENST00000539080 EPRSP07814 1512 aaKnown RBP31.42■■■□□ 2.62
CLIP1-211ENST00000539080 EFCAB5A4FU69 1503 aa31.4■■■□□ 2.62
CLIP1-211ENST00000539080 TSPOAP1O95153 1857 aa31.4■■■□□ 2.62
CLIP1-211ENST00000539080 WDR7Q9Y4E6 1490 aa31.4■■■□□ 2.62
CLIP1-211ENST00000539080 RAPGEF6Q8TEU7 1601 aa31.35■■■□□ 2.61
CLIP1-211ENST00000539080 MAP3K4Q9Y6R4 1608 aa31.34■■■□□ 2.61
CLIP1-211ENST00000539080 UBTFP17480 764 aaKnown RBP31.32■■■□□ 2.6
CLIP1-211ENST00000539080 RANGAP1P46060 587 aaPredicted RBP31.32■■■□□ 2.6
CLIP1-211ENST00000539080 PPRC1Q5VV67 1664 aaKnown RBP31.32■■■□□ 2.6
CLIP1-211ENST00000539080 FHOD3Q2V2M9 1422 aa31.31■■■□□ 2.6
CLIP1-211ENST00000539080 KDM6BO15054 1643 aa31.3■■■□□ 2.6
CLIP1-211ENST00000539080 ATP10BO94823 1461 aa31.28■■■□□ 2.6
CLIP1-211ENST00000539080 TEX14Q8IWB6 1497 aa31.22■■■□□ 2.59
CLIP1-211ENST00000539080 EHMT2Q96KQ7 1210 aa31.22■■■□□ 2.59
CLIP1-211ENST00000539080 CFAP43Q8NDM7 1665 aa31.22■■■□□ 2.59
CLIP1-211ENST00000539080 NUP153P49790 1475 aaKnown RBP31.21■■■□□ 2.59
CLIP1-211ENST00000539080 KCNH8Q96L42 1107 aa31.16■■■□□ 2.58
CLIP1-211ENST00000539080 ARID3CA6NKF2 412 aa31.15■■■□□ 2.58
CLIP1-211ENST00000539080 ARHGAP35Q9NRY4 1499 aa31.14■■■□□ 2.57
CLIP1-211ENST00000539080 CD109Q6YHK3 1445 aa31.13■■■□□ 2.57
CLIP1-211ENST00000539080 MAGI3Q5TCQ9 1506 aa31.13■■■□□ 2.57
CLIP1-211ENST00000539080 FMN1Q68DA7 1419 aa31.1■■■□□ 2.57
CLIP1-211ENST00000539080 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.08■■■□□ 2.57
CLIP1-211ENST00000539080 HNRNPUL2Q1KMD3 747 aaKnown RBP31.08■■■□□ 2.57
CLIP1-211ENST00000539080 ABCA9Q8IUA7 1624 aa31.06■■■□□ 2.56
CLIP1-211ENST00000539080 COL17A1Q9UMD9 1497 aaPredicted RBP31■■■□□ 2.55
CLIP1-211ENST00000539080 HECW1Q76N89 1606 aa30.99■■■□□ 2.55
CLIP1-211ENST00000539080 PLEKHD1A6NEE1 506 aa30.98■■■□□ 2.55
CLIP1-211ENST00000539080 CDK13Q14004 1512 aaKnown RBP30.92■■■□□ 2.54
CLIP1-211ENST00000539080 PHLDB1Q86UU1 1377 aa30.91■■■□□ 2.54
CLIP1-211ENST00000539080 AEBP2Q6ZN18 517 aaPredicted RBP30.88■■■□□ 2.53
CLIP1-211ENST00000539080 ARAP3Q8WWN8 1544 aa30.88■■■□□ 2.53
CLIP1-211ENST00000539080 NEO1Q92859 1461 aa30.85■■■□□ 2.53
CLIP1-211ENST00000539080 ATP1B4Q9UN42 357 aaPredicted RBP30.84■■■□□ 2.53
CLIP1-211ENST00000539080 CLIP1P30622 1438 aa30.83■■■□□ 2.53
CLIP1-211ENST00000539080 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.83■■■□□ 2.53
CLIP1-211ENST00000539080 CDK11AQ9UQ88 783 aaPredicted RBP30.81■■■□□ 2.52
CLIP1-211ENST00000539080 CASKIN1Q8WXD9 1431 aa30.8■■■□□ 2.52
CLIP1-211ENST00000539080 PCF11O94913 1555 aaKnown RBP30.78■■■□□ 2.52
CLIP1-211ENST00000539080 LRRIQ1Q96JM4 1722 aa30.78■■■□□ 2.52
CLIP1-211ENST00000539080 TTC37Q6PGP7 1564 aa30.77■■■□□ 2.52
CLIP1-211ENST00000539080 CFAP74Q9C0B2 1584 aa30.75■■■□□ 2.51
CLIP1-211ENST00000539080 CCDC18Q5T9S5 1454 aa30.75■■■□□ 2.51
CLIP1-211ENST00000539080 FYCO1Q9BQS8 1478 aa30.73■■■□□ 2.51
CLIP1-211ENST00000539080 TROQ12816 1431 aaPredicted RBP30.71■■■□□ 2.51
CLIP1-211ENST00000539080 FANCAO15360 1455 aa30.69■■■□□ 2.5
CLIP1-211ENST00000539080 KIF14Q15058 1648 aa30.69■■■□□ 2.5
CLIP1-211ENST00000539080 KDM4FA0A1W2PPD8 638 aa30.67■■■□□ 2.5
CLIP1-211ENST00000539080 PLCH2O75038 1416 aa30.65■■■□□ 2.5
CLIP1-211ENST00000539080 AKNAQ7Z591 1439 aa30.65■■■□□ 2.5
CLIP1-211ENST00000539080 MYO5CQ9NQX4 1742 aa30.64■■■□□ 2.5
CLIP1-211ENST00000539080 FRMPD1Q5SYB0 1578 aa30.62■■■□□ 2.49
CLIP1-211ENST00000539080 CEP162Q5TB80 1403 aa30.61■■■□□ 2.49
CLIP1-211ENST00000539080 DENND4BO75064 1496 aaPredicted RBP30.6■■■□□ 2.49
CLIP1-211ENST00000539080 ADGRL1O94910 1474 aa30.6■■■□□ 2.49
CLIP1-211ENST00000539080 RAPGEF3O95398 923 aa30.6■■■□□ 2.49
CLIP1-211ENST00000539080 RICTORQ6R327 1708 aa30.57■■■□□ 2.48
CLIP1-211ENST00000539080 EFCAB2Q5VUJ9 269 aa30.52■■■□□ 2.48
CLIP1-211ENST00000539080 ZMYM4Q5VZL5 1548 aa30.48■■■□□ 2.47
CLIP1-211ENST00000539080 ARHGAP5Q13017 1502 aa30.47■■■□□ 2.47
CLIP1-211ENST00000539080 SCAPERQ9BY12 1400 aa30.46■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms