RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 JPH4Q96JJ6 628 aa25.27■■□□□ 1.64
USP28-204ENST00000537642 PRG4Q92954 1404 aaPredicted RBP25.25■■□□□ 1.63
USP28-204ENST00000537642 KIAA0586Q9BVV6 1533 aa25.23■■□□□ 1.63
USP28-204ENST00000537642 RAPGEF2Q9Y4G8 1499 aa25.13■■□□□ 1.61
USP28-204ENST00000537642 TRHP20396 242 aaPredicted RBP25.09■■□□□ 1.61
USP28-204ENST00000537642 IQGAP2Q13576 1575 aa25.05■■□□□ 1.6
USP28-204ENST00000537642 PRXQ9BXM0 1461 aa25■■□□□ 1.59
USP28-204ENST00000537642 CARMIL2Q6F5E8 1435 aa24.95■■□□□ 1.58
USP28-204ENST00000537642 UGGT2Q9NYU1 1516 aa24.92■■□□□ 1.58
USP28-204ENST00000537642 CTTNBP2Q8WZ74 1663 aa24.92■■□□□ 1.58
USP28-204ENST00000537642 ADCY10Q96PN6 1610 aa24.92■■□□□ 1.58
USP28-204ENST00000537642 DISP1Q96F81 1524 aa24.91■■□□□ 1.58
USP28-204ENST00000537642 PTPRGP23470 1445 aa24.91■■□□□ 1.58
USP28-204ENST00000537642 TNIKQ9UKE5 1360 aa24.91■■□□□ 1.58
USP28-204ENST00000537642 CSRNP3Q8WYN3 585 aa24.9■■□□□ 1.58
USP28-204ENST00000537642 EEA1Q15075 1411 aa24.87■■□□□ 1.57
USP28-204ENST00000537642 CHIC1Q5VXU3 224 aa24.86■■□□□ 1.57
USP28-204ENST00000537642 TTBK1Q5TCY1 1321 aaPredicted RBP24.86■■□□□ 1.57
USP28-204ENST00000537642 KIAA0556O60303 1618 aa24.83■■□□□ 1.57
USP28-204ENST00000537642 NPM1P06748 294 aaKnown RBP eCLIP24.82■■□□□ 1.56
USP28-204ENST00000537642 MAPKBP1O60336 1514 aa24.78■■□□□ 1.56
USP28-204ENST00000537642 KIF13AQ9H1H9 1805 aa24.77■■□□□ 1.56
USP28-204ENST00000537642 FAM9AQ8IZU1 332 aaPredicted RBP24.77■■□□□ 1.56
USP28-204ENST00000537642 UACAQ9BZF9 1416 aa24.74■■□□□ 1.55
USP28-204ENST00000537642 UHRF1BP1LA0JNW5 1464 aa24.73■■□□□ 1.55
USP28-204ENST00000537642 GOLGA3Q08378 1498 aa24.73■■□□□ 1.55
USP28-204ENST00000537642 ABCC2Q92887 1545 aa24.72■■□□□ 1.55
USP28-204ENST00000537642 ABCC10Q5T3U5 1492 aa24.7■■□□□ 1.55
USP28-204ENST00000537642 DIP2BQ9P265 1576 aa24.67■■□□□ 1.54
USP28-204ENST00000537642 KIF21BO75037 1637 aa24.66■■□□□ 1.54
USP28-204ENST00000537642 FAM69CQ0P6D2 419 aa24.65■■□□□ 1.54
USP28-204ENST00000537642 KDM5BQ9UGL1 1544 aa24.62■■□□□ 1.53
USP28-204ENST00000537642 PLB1Q6P1J6 1458 aa24.62■■□□□ 1.53
USP28-204ENST00000537642 ASXL2Q76L83 1435 aa24.6■■□□□ 1.53
USP28-204ENST00000537642 SAMD9Q5K651 1589 aa24.59■■□□□ 1.53
USP28-204ENST00000537642 ABCA8O94911 1581 aa24.59■■□□□ 1.53
USP28-204ENST00000537642 ZCCHC11Q5TAX3 1644 aaKnown RBP24.58■■□□□ 1.53
USP28-204ENST00000537642 P3H3Q8IVL6 736 aa24.58■■□□□ 1.53
USP28-204ENST00000537642 RANGAP1P46060 587 aaPredicted RBP24.5■■□□□ 1.51
USP28-204ENST00000537642 TSPOAP1O95153 1857 aa24.49■■□□□ 1.51
USP28-204ENST00000537642 GLI2P10070 1586 aa24.48■■□□□ 1.51
USP28-204ENST00000537642 EHMT2Q96KQ7 1210 aa24.48■■□□□ 1.51
USP28-204ENST00000537642 EPRSP07814 1512 aaKnown RBP24.45■■□□□ 1.51
USP28-204ENST00000537642 FHOD3Q2V2M9 1422 aa24.44■■□□□ 1.5
USP28-204ENST00000537642 UBTFP17480 764 aaKnown RBP24.43■■□□□ 1.5
USP28-204ENST00000537642 WDR7Q9Y4E6 1490 aa24.43■■□□□ 1.5
USP28-204ENST00000537642 EFCAB5A4FU69 1503 aa24.42■■□□□ 1.5
USP28-204ENST00000537642 RAPGEF6Q8TEU7 1601 aa24.4■■□□□ 1.5
USP28-204ENST00000537642 PPRC1Q5VV67 1664 aaKnown RBP24.39■■□□□ 1.49
USP28-204ENST00000537642 ATP10BO94823 1461 aa24.38■■□□□ 1.49
USP28-204ENST00000537642 MAP3K4Q9Y6R4 1608 aa24.37■■□□□ 1.49
USP28-204ENST00000537642 ARID3CA6NKF2 412 aa24.37■■□□□ 1.49
USP28-204ENST00000537642 KDM6BO15054 1643 aa24.32■■□□□ 1.48
USP28-204ENST00000537642 NUP153P49790 1475 aaKnown RBP24.32■■□□□ 1.48
USP28-204ENST00000537642 KCNH8Q96L42 1107 aa24.3■■□□□ 1.48
USP28-204ENST00000537642 ARHGAP35Q9NRY4 1499 aa24.28■■□□□ 1.48
USP28-204ENST00000537642 CFAP43Q8NDM7 1665 aa24.26■■□□□ 1.47
USP28-204ENST00000537642 TEX14Q8IWB6 1497 aa24.24■■□□□ 1.47
USP28-204ENST00000537642 CD109Q6YHK3 1445 aa24.22■■□□□ 1.47
USP28-204ENST00000537642 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.22■■□□□ 1.47
USP28-204ENST00000537642 HNRNPUL2Q1KMD3 747 aaKnown RBP24.22■■□□□ 1.47
USP28-204ENST00000537642 MAGI3Q5TCQ9 1506 aa24.2■■□□□ 1.46
USP28-204ENST00000537642 FMN1Q68DA7 1419 aa24.18■■□□□ 1.46
USP28-204ENST00000537642 COL17A1Q9UMD9 1497 aaPredicted RBP24.18■■□□□ 1.46
USP28-204ENST00000537642 ABCA9Q8IUA7 1624 aa24.16■■□□□ 1.46
USP28-204ENST00000537642 CDK13Q14004 1512 aaKnown RBP24.13■■□□□ 1.45
USP28-204ENST00000537642 HECW1Q76N89 1606 aa24.11■■□□□ 1.45
USP28-204ENST00000537642 PLEKHD1A6NEE1 506 aa24.11■■□□□ 1.45
USP28-204ENST00000537642 ATP1B4Q9UN42 357 aaPredicted RBP24.08■■□□□ 1.45
USP28-204ENST00000537642 CLIP1P30622 1438 aa24.03■■□□□ 1.44
USP28-204ENST00000537642 LRRIQ1Q96JM4 1722 aa24.03■■□□□ 1.44
USP28-204ENST00000537642 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.01■■□□□ 1.43
USP28-204ENST00000537642 PCF11O94913 1555 aaKnown RBP24■■□□□ 1.43
USP28-204ENST00000537642 ARAP3Q8WWN8 1544 aa24■■□□□ 1.43
USP28-204ENST00000537642 CASKIN1Q8WXD9 1431 aa23.99■■□□□ 1.43
USP28-204ENST00000537642 AEBP2Q6ZN18 517 aaPredicted RBP23.98■■□□□ 1.43
USP28-204ENST00000537642 TTC37Q6PGP7 1564 aa23.98■■□□□ 1.43
USP28-204ENST00000537642 PHLDB1Q86UU1 1377 aa23.97■■□□□ 1.43
USP28-204ENST00000537642 NEO1Q92859 1461 aa23.97■■□□□ 1.43
USP28-204ENST00000537642 CDK11AQ9UQ88 783 aaPredicted RBP23.94■■□□□ 1.42
USP28-204ENST00000537642 FYCO1Q9BQS8 1478 aa23.91■■□□□ 1.42
USP28-204ENST00000537642 TROQ12816 1431 aaPredicted RBP23.91■■□□□ 1.42
USP28-204ENST00000537642 CCDC18Q5T9S5 1454 aa23.9■■□□□ 1.42
USP28-204ENST00000537642 KDM4FA0A1W2PPD8 638 aa23.9■■□□□ 1.42
USP28-204ENST00000537642 KIF14Q15058 1648 aa23.9■■□□□ 1.42
USP28-204ENST00000537642 FANCAO15360 1455 aa23.88■■□□□ 1.41
USP28-204ENST00000537642 CEP162Q5TB80 1403 aa23.88■■□□□ 1.41
USP28-204ENST00000537642 CFAP74Q9C0B2 1584 aa23.87■■□□□ 1.41
USP28-204ENST00000537642 AKNAQ7Z591 1439 aa23.86■■□□□ 1.41
USP28-204ENST00000537642 RAPGEF3O95398 923 aa23.86■■□□□ 1.41
USP28-204ENST00000537642 PLCH2O75038 1416 aa23.85■■□□□ 1.41
USP28-204ENST00000537642 LOC105371045A0A1W2PR82 267 aa23.85■■□□□ 1.41
USP28-204ENST00000537642 FRMPD1Q5SYB0 1578 aa23.85■■□□□ 1.41
USP28-204ENST00000537642 MYO5CQ9NQX4 1742 aa23.84■■□□□ 1.41
USP28-204ENST00000537642 ADGRL1O94910 1474 aa23.81■■□□□ 1.4
USP28-204ENST00000537642 RICTORQ6R327 1708 aa23.8■■□□□ 1.4
USP28-204ENST00000537642 DENND4BO75064 1496 aaPredicted RBP23.8■■□□□ 1.4
USP28-204ENST00000537642 EFCAB2Q5VUJ9 269 aa23.75■■□□□ 1.39
USP28-204ENST00000537642 CDC42BPBQ9Y5S2 1711 aa23.73■■□□□ 1.39
USP28-204ENST00000537642 SCAPERQ9BY12 1400 aa23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms