RNA–Protein interactions for RNA: ENST00000534320.5

PHRF1-206, Transcript of PHD and ring finger domains 1, humanhuman

TSL 5

Gene PHRF1, Length 5,178 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-206ENST00000534320 HNRNPUQ00839 825 aaKnown RBP eCLIP23.48■■□□□ 1.35
PHRF1-206ENST00000534320 ATAD2BQ9ULI0 1458 aa23.47■■□□□ 1.35
PHRF1-206ENST00000534320 HIRIP3Q9BW71 556 aaPredicted RBP23.46■■□□□ 1.35
PHRF1-206ENST00000534320 ERCC6Q03468 1493 aa23.46■■□□□ 1.35
PHRF1-206ENST00000534320 CCNB3Q8WWL7 1395 aa23.44■■□□□ 1.34
PHRF1-206ENST00000534320 KDM2AQ9Y2K7 1162 aa23.43■■□□□ 1.34
PHRF1-206ENST00000534320 FAM9BQ8IZU0 186 aa23.43■■□□□ 1.34
PHRF1-206ENST00000534320 CFDP1Q9UEE9 299 aaPredicted RBP23.42■■□□□ 1.34
PHRF1-206ENST00000534320 FKBP8Q14318 412 aa23.4■■□□□ 1.34
PHRF1-206ENST00000534320 EIF4G2P78344 907 aaKnown RBP eCLIP23.4■■□□□ 1.343e-7■■■□□ 15.9
PHRF1-206ENST00000534320 KCNH8Q96L42 1107 aa23.39■■□□□ 1.33
PHRF1-206ENST00000534320 ESF1Q9H501 851 aaKnown RBP23.37■■□□□ 1.33
PHRF1-206ENST00000534320 CANXP27824 592 aaKnown RBP23.37■■□□□ 1.33
PHRF1-206ENST00000534320 EIF4G1Q04637 1599 aaKnown RBP23.35■■□□□ 1.33
PHRF1-206ENST00000534320 NEFMP07197 916 aa23.34■■□□□ 1.33
PHRF1-206ENST00000534320 CADPSQ9ULU8 1353 aa23.33■■□□□ 1.33
PHRF1-206ENST00000534320 PDS5BQ9NTI5 1447 aa23.33■■□□□ 1.33
PHRF1-206ENST00000534320 STAG3Q9UJ98 1225 aa23.33■■□□□ 1.33
PHRF1-206ENST00000534320 KANK4Q5T7N3 995 aaPredicted RBP23.31■■□□□ 1.32
PHRF1-206ENST00000534320 TMC1Q8TDI8 760 aa23.3■■□□□ 1.32
PHRF1-206ENST00000534320 MRS2Q9HD23 443 aa23.3■■□□□ 1.32
PHRF1-206ENST00000534320 SIN3AQ96ST3 1273 aa23.29■■□□□ 1.32
PHRF1-206ENST00000534320 TDRD9Q8NDG6 1382 aaKnown RBP23.25■■□□□ 1.31
PHRF1-206ENST00000534320 ANP32AP39687 249 aaKnown RBP23.24■■□□□ 1.31
PHRF1-206ENST00000534320 SCAF1Q9H7N4 1312 aaKnown RBP23.23■■□□□ 1.31
PHRF1-206ENST00000534320 RAPGEF2Q9Y4G8 1499 aa23.21■■□□□ 1.31
PHRF1-206ENST00000534320 RUSC2Q8N2Y8 1516 aa23.2■■□□□ 1.3
PHRF1-206ENST00000534320 ZBTB47Q9UFB7 747 aaPredicted RBP23.19■■□□□ 1.3
PHRF1-206ENST00000534320 SALL2Q9Y467 1007 aaPredicted RBP23.19■■□□□ 1.3
PHRF1-206ENST00000534320 ARHGAP35Q9NRY4 1499 aa23.19■■□□□ 1.3
PHRF1-206ENST00000534320 SETD5Q9C0A6 1442 aa23.16■■□□□ 1.3
PHRF1-206ENST00000534320 RGL3Q3MIN7 710 aa23.16■■□□□ 1.3
PHRF1-206ENST00000534320 FMN1Q68DA7 1419 aa23.14■■□□□ 1.29
PHRF1-206ENST00000534320 SLC24A1O60721 1099 aa23.11■■□□□ 1.29
PHRF1-206ENST00000534320 TIMELESSQ9UNS1 1208 aa23.1■■□□□ 1.29
PHRF1-206ENST00000534320 WDR43Q15061 677 aaKnown RBP eCLIP23.09■■□□□ 1.29
PHRF1-206ENST00000534320 CARD11Q9BXL7 1154 aa23.05■■□□□ 1.28
PHRF1-206ENST00000534320 PLPPR3Q6T4P5 718 aa23.05■■□□□ 1.28
PHRF1-206ENST00000534320 ANP32BQ92688 251 aaKnown RBP23.03■■□□□ 1.28
PHRF1-206ENST00000534320 FANCD2Q9BXW9 1451 aa23.03■■□□□ 1.28
PHRF1-206ENST00000534320 FHOD3Q2V2M9 1422 aa23.02■■□□□ 1.28
PHRF1-206ENST00000534320 BCL11AQ9H165 835 aa23.02■■□□□ 1.28
PHRF1-206ENST00000534320 RAB3GAP2Q9H2M9 1393 aa23.02■■□□□ 1.28
PHRF1-206ENST00000534320 CARMIL2Q6F5E8 1435 aa23.01■■□□□ 1.27
PHRF1-206ENST00000534320 CCDC136Q96JN2 1154 aa23■■□□□ 1.27
PHRF1-206ENST00000534320 NPM2Q86SE8 214 aaKnown RBP22.97■■□□□ 1.27
PHRF1-206ENST00000534320 IRX6P78412 446 aaPredicted RBP22.96■■□□□ 1.27
PHRF1-206ENST00000534320 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.94■■□□□ 1.26
PHRF1-206ENST00000534320 NCAPD3P42695 1498 aa22.94■■□□□ 1.26
PHRF1-206ENST00000534320 CDCA8Q53HL2 280 aa22.91■■□□□ 1.26
PHRF1-206ENST00000534320 SENP3Q9H4L4 574 aaPredicted RBP22.88■■□□□ 1.25
PHRF1-206ENST00000534320 KNSTRNQ9Y448 316 aa22.86■■□□□ 1.25
PHRF1-206ENST00000534320 FGD5Q6ZNL6 1462 aa22.86■■□□□ 1.25
PHRF1-206ENST00000534320 DCAF11Q8TEB1 546 aa22.85■■□□□ 1.25
PHRF1-206ENST00000534320 PPP1R15AO75807 674 aaPredicted RBP22.84■■□□□ 1.25
PHRF1-206ENST00000534320 IGF1RP08069 1367 aa22.84■■□□□ 1.25
PHRF1-206ENST00000534320 FOXD1Q16676 465 aa22.83■■□□□ 1.25
PHRF1-206ENST00000534320 PKD2Q13563 968 aa22.82■■□□□ 1.24
PHRF1-206ENST00000534320 MPHOSPH9Q99550 1183 aa22.82■■□□□ 1.24
PHRF1-206ENST00000534320 HSPA5P11021 654 aaKnown RBP22.79■■□□□ 1.24
PHRF1-206ENST00000534320 SENP3-EIF4A1A0A087X0R7 540 aa22.77■■□□□ 1.24
PHRF1-206ENST00000534320 SUPT16HQ9Y5B9 1047 aaKnown RBP22.77■■□□□ 1.24
PHRF1-206ENST00000534320 CCDC18Q5T9S5 1454 aa22.76■■□□□ 1.23
PHRF1-206ENST00000534320 ANKRD30AQ9BXX3 1397 aa22.75■■□□□ 1.23
PHRF1-206ENST00000534320 KANK1Q14678 1352 aa22.75■■□□□ 1.23
PHRF1-206ENST00000534320 JPH4Q96JJ6 628 aa22.74■■□□□ 1.23
PHRF1-206ENST00000534320 RAD54L2Q9Y4B4 1467 aa22.74■■□□□ 1.23
PHRF1-206ENST00000534320 CCER2I3L3R5 266 aa22.73■■□□□ 1.23
PHRF1-206ENST00000534320 UPF2Q9HAU5 1272 aaKnown RBP22.73■■□□□ 1.23
PHRF1-206ENST00000534320 DHX57Q6P158 1386 aaKnown RBP22.72■■□□□ 1.23
PHRF1-206ENST00000534320 NUP155O75694 1391 aa22.71■■□□□ 1.23
PHRF1-206ENST00000534320 GAPVD1Q14C86 1478 aa22.7■■□□□ 1.23
PHRF1-206ENST00000534320 CFAP53Q96M91 514 aa22.7■■□□□ 1.22
PHRF1-206ENST00000534320 TMF1P82094 1093 aa22.69■■□□□ 1.22
PHRF1-206ENST00000534320 NBR1Q14596 966 aa22.69■■□□□ 1.22
PHRF1-206ENST00000534320 EFCAB2Q5VUJ9 269 aa22.68■■□□□ 1.22
PHRF1-206ENST00000534320 SYNJ1O43426 1573 aa22.68■■□□□ 1.22
PHRF1-206ENST00000534320 ARID4BQ4LE39 1312 aaPredicted RBP22.68■■□□□ 1.22
PHRF1-206ENST00000534320 KIF21BO75037 1637 aa22.67■■□□□ 1.22
PHRF1-206ENST00000534320 CFTRP13569 1480 aa22.66■■□□□ 1.22
PHRF1-206ENST00000534320 CC2D1BQ5T0F9 858 aaKnown RBP22.66■■□□□ 1.22
PHRF1-206ENST00000534320 HNRNPMP52272 730 aaKnown RBP eCLIP22.63■■□□□ 1.211e-6■■■□□ 17.1
PHRF1-206ENST00000534320 L3MBTL2Q969R5 705 aa22.61■■□□□ 1.21
PHRF1-206ENST00000534320 POGKQ9P215 609 aa22.6■■□□□ 1.21
PHRF1-206ENST00000534320 RSPH4AQ5TD94 716 aa22.58■■□□□ 1.21
PHRF1-206ENST00000534320 ANP32EQ9BTT0 268 aa22.58■■□□□ 1.21
PHRF1-206ENST00000534320 HSP90AA1P07900 732 aaKnown RBP22.58■■□□□ 1.2
PHRF1-206ENST00000534320 ERICH3Q5RHP9 1530 aa22.57■■□□□ 1.2
PHRF1-206ENST00000534320 TNNT2P45379 298 aaPredicted RBP22.56■■□□□ 1.2
PHRF1-206ENST00000534320 GGT6Q6P531 493 aa22.56■■□□□ 1.2
PHRF1-206ENST00000534320 HMGXB3Q12766 1538 aa22.56■■□□□ 1.2
PHRF1-206ENST00000534320 PPP4R2Q9NY27 417 aa22.54■■□□□ 1.2
PHRF1-206ENST00000534320 ROCK2O75116 1388 aaKnown RBP22.54■■□□□ 1.2
PHRF1-206ENST00000534320 PPM1GO15355 546 aaPredicted RBP22.53■■□□□ 1.2
PHRF1-206ENST00000534320 NEUROD2Q15784 382 aa22.52■■□□□ 1.2
PHRF1-206ENST00000534320 TOP2BQ02880 1626 aa22.51■■□□□ 1.19
PHRF1-206ENST00000534320 C14orf37Q86TY3 774 aa22.5■■□□□ 1.19
PHRF1-206ENST00000534320 NUDCQ9Y266 331 aa22.5■■□□□ 1.19
PHRF1-206ENST00000534320 PTPRGP23470 1445 aa22.49■■□□□ 1.19
PHRF1-206ENST00000534320 MYH16Q9H6N6 1097 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 105.6 ms