RNA–Protein interactions for RNA: ENST00000533704.1

CAPN1-225, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 643 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-225ENST00000533704 PRG4Q92954 1404 aaPredicted RBP17.91■□□□□ 0.46
CAPN1-225ENST00000533704 JPH4Q96JJ6 628 aa17.9■□□□□ 0.46
CAPN1-225ENST00000533704 CARMIL1Q5VZK9 1371 aa17.88■□□□□ 0.45
CAPN1-225ENST00000533704 KIAA0586Q9BVV6 1533 aa17.84■□□□□ 0.45
CAPN1-225ENST00000533704 IQGAP2Q13576 1575 aa17.76■□□□□ 0.43
CAPN1-225ENST00000533704 RAPGEF2Q9Y4G8 1499 aa17.75■□□□□ 0.43
CAPN1-225ENST00000533704 TTBK1Q5TCY1 1321 aaPredicted RBP17.74■□□□□ 0.43
CAPN1-225ENST00000533704 ADCY10Q96PN6 1610 aa17.7■□□□□ 0.42
CAPN1-225ENST00000533704 CARMIL2Q6F5E8 1435 aa17.69■□□□□ 0.42
CAPN1-225ENST00000533704 CTTNBP2Q8WZ74 1663 aa17.68■□□□□ 0.42
CAPN1-225ENST00000533704 KIF13AQ9H1H9 1805 aa17.68■□□□□ 0.42
CAPN1-225ENST00000533704 NPM1P06748 294 aaKnown RBP eCLIP17.68■□□□□ 0.42
CAPN1-225ENST00000533704 PTPRGP23470 1445 aa17.66■□□□□ 0.42
CAPN1-225ENST00000533704 TNIKQ9UKE5 1360 aa17.64■□□□□ 0.41
CAPN1-225ENST00000533704 DISP1Q96F81 1524 aa17.62■□□□□ 0.41
CAPN1-225ENST00000533704 UGGT2Q9NYU1 1516 aa17.6■□□□□ 0.41
CAPN1-225ENST00000533704 KIAA0556O60303 1618 aa17.59■□□□□ 0.41
CAPN1-225ENST00000533704 MAPKBP1O60336 1514 aa17.59■□□□□ 0.41
CAPN1-225ENST00000533704 PRXQ9BXM0 1461 aa17.58■□□□□ 0.41
CAPN1-225ENST00000533704 FAM69CQ0P6D2 419 aa17.56■□□□□ 0.4
CAPN1-225ENST00000533704 TSPOAP1O95153 1857 aa17.55■□□□□ 0.4
CAPN1-225ENST00000533704 DIP2BQ9P265 1576 aa17.55■□□□□ 0.4
CAPN1-225ENST00000533704 ABCC10Q5T3U5 1492 aa17.55■□□□□ 0.4
CAPN1-225ENST00000533704 CSRNP3Q8WYN3 585 aa17.53■□□□□ 0.4
CAPN1-225ENST00000533704 UACAQ9BZF9 1416 aa17.53■□□□□ 0.4
CAPN1-225ENST00000533704 ABCC2Q92887 1545 aa17.52■□□□□ 0.4
CAPN1-225ENST00000533704 FAM9AQ8IZU1 332 aaPredicted RBP17.52■□□□□ 0.4
CAPN1-225ENST00000533704 GOLGA3Q08378 1498 aa17.5■□□□□ 0.39
CAPN1-225ENST00000533704 UHRF1BP1LA0JNW5 1464 aa17.49■□□□□ 0.39
CAPN1-225ENST00000533704 EEA1Q15075 1411 aa17.48■□□□□ 0.39
CAPN1-225ENST00000533704 ZCCHC11Q5TAX3 1644 aaKnown RBP17.47■□□□□ 0.39
CAPN1-225ENST00000533704 ASXL2Q76L83 1435 aa17.46■□□□□ 0.39
CAPN1-225ENST00000533704 P3H3Q8IVL6 736 aa17.43■□□□□ 0.38
CAPN1-225ENST00000533704 PLB1Q6P1J6 1458 aa17.43■□□□□ 0.38
CAPN1-225ENST00000533704 KDM5BQ9UGL1 1544 aa17.42■□□□□ 0.38
CAPN1-225ENST00000533704 RANGAP1P46060 587 aaPredicted RBP17.42■□□□□ 0.38
CAPN1-225ENST00000533704 CHIC1Q5VXU3 224 aa17.41■□□□□ 0.38
CAPN1-225ENST00000533704 ABCA8O94911 1581 aa17.39■□□□□ 0.37
CAPN1-225ENST00000533704 EHMT2Q96KQ7 1210 aa17.38■□□□□ 0.37
CAPN1-225ENST00000533704 KDM6BO15054 1643 aa17.37■□□□□ 0.37
CAPN1-225ENST00000533704 KIF21BO75037 1637 aa17.37■□□□□ 0.37
CAPN1-225ENST00000533704 GLI2P10070 1586 aa17.36■□□□□ 0.37
CAPN1-225ENST00000533704 SAMD9Q5K651 1589 aa17.36■□□□□ 0.37
CAPN1-225ENST00000533704 ARID3CA6NKF2 412 aa17.34■□□□□ 0.37
CAPN1-225ENST00000533704 EPRSP07814 1512 aaKnown RBP17.34■□□□□ 0.37
CAPN1-225ENST00000533704 PPRC1Q5VV67 1664 aaKnown RBP17.34■□□□□ 0.37
CAPN1-225ENST00000533704 WDR7Q9Y4E6 1490 aa17.32■□□□□ 0.36
CAPN1-225ENST00000533704 MAP3K4Q9Y6R4 1608 aa17.32■□□□□ 0.36
CAPN1-225ENST00000533704 AEBP2Q6ZN18 517 aaPredicted RBP17.3■□□□□ 0.36
CAPN1-225ENST00000533704 KCNH8Q96L42 1107 aa17.29■□□□□ 0.36
CAPN1-225ENST00000533704 RAPGEF6Q8TEU7 1601 aa17.29■□□□□ 0.36
CAPN1-225ENST00000533704 FHOD3Q2V2M9 1422 aa17.28■□□□□ 0.36
CAPN1-225ENST00000533704 UBTFP17480 764 aaKnown RBP17.27■□□□□ 0.36
CAPN1-225ENST00000533704 CFAP43Q8NDM7 1665 aa17.24■□□□□ 0.35
CAPN1-225ENST00000533704 ATP10BO94823 1461 aa17.24■□□□□ 0.35
CAPN1-225ENST00000533704 TEX14Q8IWB6 1497 aa17.24■□□□□ 0.35
CAPN1-225ENST00000533704 EFCAB5A4FU69 1503 aa17.23■□□□□ 0.35
CAPN1-225ENST00000533704 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.23■□□□□ 0.35
CAPN1-225ENST00000533704 HNRNPUL2Q1KMD3 747 aaKnown RBP17.23■□□□□ 0.35
CAPN1-225ENST00000533704 CD109Q6YHK3 1445 aa17.2■□□□□ 0.34
CAPN1-225ENST00000533704 NUP153P49790 1475 aaKnown RBP17.18■□□□□ 0.34
CAPN1-225ENST00000533704 COL17A1Q9UMD9 1497 aaPredicted RBP17.16■□□□□ 0.34
CAPN1-225ENST00000533704 MAGI3Q5TCQ9 1506 aa17.14■□□□□ 0.33
CAPN1-225ENST00000533704 ABCA9Q8IUA7 1624 aa17.13■□□□□ 0.33
CAPN1-225ENST00000533704 ATP1B4Q9UN42 357 aaPredicted RBP17.11■□□□□ 0.33
CAPN1-225ENST00000533704 ARHGAP35Q9NRY4 1499 aa17.1■□□□□ 0.33
CAPN1-225ENST00000533704 CDK13Q14004 1512 aaKnown RBP17.08■□□□□ 0.32
CAPN1-225ENST00000533704 PLEKHD1A6NEE1 506 aa17.08■□□□□ 0.32
CAPN1-225ENST00000533704 HECW1Q76N89 1606 aa17.07■□□□□ 0.32
CAPN1-225ENST00000533704 FMN1Q68DA7 1419 aa17.06■□□□□ 0.32
CAPN1-225ENST00000533704 KDM4FA0A1W2PPD8 638 aa17.04■□□□□ 0.32
CAPN1-225ENST00000533704 TTC37Q6PGP7 1564 aa17.01■□□□□ 0.31
CAPN1-225ENST00000533704 LRRIQ1Q96JM4 1722 aa17■□□□□ 0.31
CAPN1-225ENST00000533704 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17■□□□□ 0.31
CAPN1-225ENST00000533704 ARAP3Q8WWN8 1544 aa17■□□□□ 0.31
CAPN1-225ENST00000533704 ADGRL1O94910 1474 aa16.99■□□□□ 0.31
CAPN1-225ENST00000533704 NEO1Q92859 1461 aa16.99■□□□□ 0.31
CAPN1-225ENST00000533704 PCF11O94913 1555 aaKnown RBP16.97■□□□□ 0.31
CAPN1-225ENST00000533704 PHLDB1Q86UU1 1377 aa16.96■□□□□ 0.31
CAPN1-225ENST00000533704 CFAP74Q9C0B2 1584 aa16.96■□□□□ 0.31
CAPN1-225ENST00000533704 RAPGEF3O95398 923 aa16.95■□□□□ 0.3
CAPN1-225ENST00000533704 CDK11AQ9UQ88 783 aaPredicted RBP16.94■□□□□ 0.3
CAPN1-225ENST00000533704 CLIP1P30622 1438 aa16.94■□□□□ 0.3
CAPN1-225ENST00000533704 FANCAO15360 1455 aa16.93■□□□□ 0.3
CAPN1-225ENST00000533704 MYO5CQ9NQX4 1742 aa16.93■□□□□ 0.3
CAPN1-225ENST00000533704 KIF14Q15058 1648 aa16.93■□□□□ 0.3
CAPN1-225ENST00000533704 FRMPD1Q5SYB0 1578 aa16.92■□□□□ 0.3
CAPN1-225ENST00000533704 AKNAQ7Z591 1439 aa16.91■□□□□ 0.3
CAPN1-225ENST00000533704 RICTORQ6R327 1708 aa16.9■□□□□ 0.3
CAPN1-225ENST00000533704 CASKIN1Q8WXD9 1431 aa16.9■□□□□ 0.3
CAPN1-225ENST00000533704 TROQ12816 1431 aaPredicted RBP16.88■□□□□ 0.29
CAPN1-225ENST00000533704 DENND4BO75064 1496 aaPredicted RBP16.88■□□□□ 0.29
CAPN1-225ENST00000533704 CCDC18Q5T9S5 1454 aa16.88■□□□□ 0.29
CAPN1-225ENST00000533704 PLCH2O75038 1416 aa16.86■□□□□ 0.29
CAPN1-225ENST00000533704 FYCO1Q9BQS8 1478 aa16.86■□□□□ 0.29
CAPN1-225ENST00000533704 ARHGAP5Q13017 1502 aa16.84■□□□□ 0.29
CAPN1-225ENST00000533704 ARHGEF40Q8TER5 1519 aa16.83■□□□□ 0.28
CAPN1-225ENST00000533704 SCAPERQ9BY12 1400 aa16.82■□□□□ 0.28
CAPN1-225ENST00000533704 ARID4BQ4LE39 1312 aaPredicted RBP16.82■□□□□ 0.28
CAPN1-225ENST00000533704 EFCAB2Q5VUJ9 269 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 183 ms