RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 RUSC2Q8N2Y8 1516 aa30.89■■■□□ 2.54
PCF11-206ENST00000533018 CUL7Q14999 1698 aa30.86■■■□□ 2.53
PCF11-206ENST00000533018 KIAA0586Q9BVV6 1533 aa30.76■■■□□ 2.51
PCF11-206ENST00000533018 CARMIL1Q5VZK9 1371 aa30.74■■■□□ 2.51
PCF11-206ENST00000533018 NPM1P06748 294 aaKnown RBP eCLIP30.69■■■□□ 2.5
PCF11-206ENST00000533018 KIF13AQ9H1H9 1805 aa30.59■■■□□ 2.49
PCF11-206ENST00000533018 TTBK1Q5TCY1 1321 aaPredicted RBP30.59■■■□□ 2.49
PCF11-206ENST00000533018 ADCY10Q96PN6 1610 aa30.57■■■□□ 2.48
PCF11-206ENST00000533018 FAM69CQ0P6D2 419 aa30.52■■■□□ 2.48
PCF11-206ENST00000533018 IQGAP2Q13576 1575 aa30.51■■■□□ 2.47
PCF11-206ENST00000533018 CARMIL2Q6F5E8 1435 aa30.51■■■□□ 2.47
PCF11-206ENST00000533018 PTPRGP23470 1445 aa30.5■■■□□ 2.47
PCF11-206ENST00000533018 MAPKBP1O60336 1514 aa30.47■■■□□ 2.47
PCF11-206ENST00000533018 RAPGEF2Q9Y4G8 1499 aa30.47■■■□□ 2.47
PCF11-206ENST00000533018 ABCC10Q5T3U5 1492 aa30.45■■■□□ 2.47
PCF11-206ENST00000533018 TNIKQ9UKE5 1360 aa30.44■■■□□ 2.46
PCF11-206ENST00000533018 AEBP2Q6ZN18 517 aaPredicted RBP30.41■■■□□ 2.46
PCF11-206ENST00000533018 DIP2BQ9P265 1576 aa30.38■■■□□ 2.45
PCF11-206ENST00000533018 DISP1Q96F81 1524 aa30.32■■■□□ 2.44
PCF11-206ENST00000533018 TSPOAP1O95153 1857 aa30.3■■■□□ 2.44
PCF11-206ENST00000533018 ABCC2Q92887 1545 aa30.28■■■□□ 2.44
PCF11-206ENST00000533018 UGGT2Q9NYU1 1516 aa30.27■■■□□ 2.44
PCF11-206ENST00000533018 UACAQ9BZF9 1416 aa30.26■■■□□ 2.43
PCF11-206ENST00000533018 CTTNBP2Q8WZ74 1663 aa30.23■■■□□ 2.43
PCF11-206ENST00000533018 KIAA0556O60303 1618 aa30.22■■■□□ 2.43
PCF11-206ENST00000533018 UHRF1BP1LA0JNW5 1464 aa30.21■■■□□ 2.43
PCF11-206ENST00000533018 ASXL2Q76L83 1435 aa30.2■■■□□ 2.42
PCF11-206ENST00000533018 PLB1Q6P1J6 1458 aa30.17■■■□□ 2.42
PCF11-206ENST00000533018 KDM6BO15054 1643 aa30.14■■■□□ 2.41
PCF11-206ENST00000533018 PRXQ9BXM0 1461 aa30.12■■■□□ 2.41
PCF11-206ENST00000533018 GOLGA3Q08378 1498 aa30.1■■■□□ 2.41
PCF11-206ENST00000533018 KDM5BQ9UGL1 1544 aa30.08■■■□□ 2.41
PCF11-206ENST00000533018 ZCCHC11Q5TAX3 1644 aaKnown RBP30.07■■■□□ 2.4
PCF11-206ENST00000533018 GLI2P10070 1586 aa30.04■■■□□ 2.4
PCF11-206ENST00000533018 CSRNP3Q8WYN3 585 aa30.01■■■□□ 2.39
PCF11-206ENST00000533018 EPRSP07814 1512 aaKnown RBP29.99■■■□□ 2.39
PCF11-206ENST00000533018 PPRC1Q5VV67 1664 aaKnown RBP29.97■■■□□ 2.39
PCF11-206ENST00000533018 FAM9AQ8IZU1 332 aaPredicted RBP29.96■■■□□ 2.39
PCF11-206ENST00000533018 P3H3Q8IVL6 736 aa29.95■■■□□ 2.39
PCF11-206ENST00000533018 ABCA8O94911 1581 aa29.91■■■□□ 2.38
PCF11-206ENST00000533018 MAP3K4Q9Y6R4 1608 aa29.91■■■□□ 2.38
PCF11-206ENST00000533018 WDR7Q9Y4E6 1490 aa29.91■■■□□ 2.38
PCF11-206ENST00000533018 KCNH8Q96L42 1107 aa29.88■■■□□ 2.37
PCF11-206ENST00000533018 TEX14Q8IWB6 1497 aa29.86■■■□□ 2.37
PCF11-206ENST00000533018 EEA1Q15075 1411 aa29.85■■■□□ 2.37
PCF11-206ENST00000533018 ARID3CA6NKF2 412 aa29.84■■■□□ 2.37
PCF11-206ENST00000533018 RANGAP1P46060 587 aaPredicted RBP29.83■■■□□ 2.37
PCF11-206ENST00000533018 KDM4FA0A1W2PPD8 638 aa29.77■■■□□ 2.36
PCF11-206ENST00000533018 COL17A1Q9UMD9 1497 aaPredicted RBP29.75■■■□□ 2.35
PCF11-206ENST00000533018 SAMD9Q5K651 1589 aa29.75■■■□□ 2.35
PCF11-206ENST00000533018 CD109Q6YHK3 1445 aa29.75■■■□□ 2.35
PCF11-206ENST00000533018 CFAP43Q8NDM7 1665 aa29.73■■■□□ 2.35
PCF11-206ENST00000533018 ATP10BO94823 1461 aa29.69■■■□□ 2.34
PCF11-206ENST00000533018 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.69■■■□□ 2.34
PCF11-206ENST00000533018 HNRNPUL2Q1KMD3 747 aaKnown RBP29.69■■■□□ 2.34
PCF11-206ENST00000533018 RAPGEF6Q8TEU7 1601 aa29.66■■■□□ 2.34
PCF11-206ENST00000533018 MAGI3Q5TCQ9 1506 aa29.66■■■□□ 2.34
PCF11-206ENST00000533018 EHMT2Q96KQ7 1210 aa29.62■■■□□ 2.33
PCF11-206ENST00000533018 FHOD3Q2V2M9 1422 aa29.62■■■□□ 2.33
PCF11-206ENST00000533018 KIF21BO75037 1637 aa29.6■■■□□ 2.33
PCF11-206ENST00000533018 ADGRL1O94910 1474 aa29.56■■■□□ 2.32
PCF11-206ENST00000533018 CHIC1Q5VXU3 224 aa29.54■■■□□ 2.32
PCF11-206ENST00000533018 UBTFP17480 764 aaKnown RBP29.52■■■□□ 2.32
PCF11-206ENST00000533018 NUP153P49790 1475 aaKnown RBP29.51■■■□□ 2.31
PCF11-206ENST00000533018 ABCA9Q8IUA7 1624 aa29.5■■■□□ 2.31
PCF11-206ENST00000533018 EFCAB5A4FU69 1503 aa29.49■■■□□ 2.31
PCF11-206ENST00000533018 PLEKHD1A6NEE1 506 aa29.45■■■□□ 2.31
PCF11-206ENST00000533018 ARAP3Q8WWN8 1544 aa29.42■■■□□ 2.3
PCF11-206ENST00000533018 PHLDB1Q86UU1 1377 aa29.39■■■□□ 2.3
PCF11-206ENST00000533018 ATP1B4Q9UN42 357 aaPredicted RBP29.37■■■□□ 2.29
PCF11-206ENST00000533018 RAPGEF3O95398 923 aa29.35■■■□□ 2.29
PCF11-206ENST00000533018 NEO1Q92859 1461 aa29.34■■■□□ 2.29
PCF11-206ENST00000533018 CDK13Q14004 1512 aaKnown RBP29.28■■■□□ 2.28
PCF11-206ENST00000533018 FMN1Q68DA7 1419 aa29.26■■■□□ 2.27
PCF11-206ENST00000533018 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.25■■■□□ 2.272e-39■□□□□ 9.9
PCF11-206ENST00000533018 ARHGAP35Q9NRY4 1499 aa29.24■■■□□ 2.27
PCF11-206ENST00000533018 HECW1Q76N89 1606 aa29.21■■■□□ 2.27
PCF11-206ENST00000533018 TTC37Q6PGP7 1564 aa29.21■■■□□ 2.27
PCF11-206ENST00000533018 FANCAO15360 1455 aa29.2■■■□□ 2.26
PCF11-206ENST00000533018 AKNAQ7Z591 1439 aa29.2■■■□□ 2.26
PCF11-206ENST00000533018 FRMPD1Q5SYB0 1578 aa29.18■■■□□ 2.26
PCF11-206ENST00000533018 CFAP74Q9C0B2 1584 aa29.18■■■□□ 2.26
PCF11-206ENST00000533018 ARID4BQ4LE39 1312 aaPredicted RBP29.17■■■□□ 2.26
PCF11-206ENST00000533018 DENND4BO75064 1496 aaPredicted RBP29.17■■■□□ 2.26
PCF11-206ENST00000533018 CDK11AQ9UQ88 783 aaPredicted RBP29.16■■■□□ 2.26
PCF11-206ENST00000533018 HECW2Q9P2P5 1572 aa29.12■■■□□ 2.25
PCF11-206ENST00000533018 RICTORQ6R327 1708 aa29.11■■■□□ 2.25
PCF11-206ENST00000533018 PLCH2O75038 1416 aa29.06■■■□□ 2.24
PCF11-206ENST00000533018 MYO5CQ9NQX4 1742 aa29.04■■■□□ 2.24
PCF11-206ENST00000533018 ADAMTSL3P82987 1691 aa29.04■■■□□ 2.24
PCF11-206ENST00000533018 ARHGEF40Q8TER5 1519 aa29.04■■■□□ 2.24
PCF11-206ENST00000533018 BCORL1Q5H9F3 1711 aa29.03■■■□□ 2.24
PCF11-206ENST00000533018 LRRIQ1Q96JM4 1722 aa29.02■■■□□ 2.24
PCF11-206ENST00000533018 SCAPERQ9BY12 1400 aa29.02■■■□□ 2.24
PCF11-206ENST00000533018 KIF14Q15058 1648 aa29.02■■■□□ 2.24
PCF11-206ENST00000533018 EFCAB2Q5VUJ9 269 aa29.01■■■□□ 2.23
PCF11-206ENST00000533018 CLIP1P30622 1438 aa29.01■■■□□ 2.23
PCF11-206ENST00000533018 PTPRMP28827 1452 aa29■■■□□ 2.23
PCF11-206ENST00000533018 TROQ12816 1431 aaPredicted RBP29■■■□□ 2.23
PCF11-206ENST00000533018 ZFYVE16Q7Z3T8 1539 aa28.98■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 211.7 ms