RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 RAPGEF2Q9Y4G8 1499 aa33.33■■■□□ 2.93
CPSF1-209ENST00000532725 KIAA0586Q9BVV6 1533 aa33.32■■■□□ 2.92
CPSF1-209ENST00000532725 CSRNP3Q8WYN3 585 aa33.3■■■□□ 2.92
CPSF1-209ENST00000532725 SHROOM2Q13796 1616 aa33.29■■■□□ 2.92
CPSF1-209ENST00000532725 PRXQ9BXM0 1461 aa33.25■■■□□ 2.91
CPSF1-209ENST00000532725 ERCC6L2Q5T890 1561 aa33.23■■■□□ 2.91
CPSF1-209ENST00000532725 EEA1Q15075 1411 aa33.22■■■□□ 2.91
CPSF1-209ENST00000532725 PRG4Q92954 1404 aaPredicted RBP33.22■■■□□ 2.91
CPSF1-209ENST00000532725 FAM9AQ8IZU1 332 aaPredicted RBP33.17■■■□□ 2.9
CPSF1-209ENST00000532725 IQGAP2Q13576 1575 aa33.04■■■□□ 2.88
CPSF1-209ENST00000532725 CARMIL2Q6F5E8 1435 aa32.93■■■□□ 2.86
CPSF1-209ENST00000532725 UGGT2Q9NYU1 1516 aa32.92■■■□□ 2.86
CPSF1-209ENST00000532725 DISP1Q96F81 1524 aa32.89■■■□□ 2.86
CPSF1-209ENST00000532725 CTTNBP2Q8WZ74 1663 aa32.88■■■□□ 2.85
CPSF1-209ENST00000532725 TNIKQ9UKE5 1360 aa32.85■■■□□ 2.85
CPSF1-209ENST00000532725 PTPRGP23470 1445 aa32.85■■■□□ 2.85
CPSF1-209ENST00000532725 KIF21BO75037 1637 aa32.83■■■□□ 2.85
CPSF1-209ENST00000532725 TTBK1Q5TCY1 1321 aaPredicted RBP32.78■■■□□ 2.84
CPSF1-209ENST00000532725 GOLGA3Q08378 1498 aa32.73■■■□□ 2.83
CPSF1-209ENST00000532725 KIAA0556O60303 1618 aa32.73■■■□□ 2.83
CPSF1-209ENST00000532725 EHMT2Q96KQ7 1210 aa32.72■■■□□ 2.83
CPSF1-209ENST00000532725 UBTFP17480 764 aaKnown RBP32.68■■■□□ 2.82
CPSF1-209ENST00000532725 TRHP20396 242 aaPredicted RBP32.66■■■□□ 2.82
CPSF1-209ENST00000532725 NPM1P06748 294 aaKnown RBP eCLIP32.64■■■□□ 2.82
CPSF1-209ENST00000532725 ADCY10Q96PN6 1610 aa32.64■■■□□ 2.82
CPSF1-209ENST00000532725 P3H3Q8IVL6 736 aa32.62■■■□□ 2.81
CPSF1-209ENST00000532725 UACAQ9BZF9 1416 aa32.61■■■□□ 2.81
CPSF1-209ENST00000532725 RANGAP1P46060 587 aaPredicted RBP32.6■■■□□ 2.81
CPSF1-209ENST00000532725 UHRF1BP1LA0JNW5 1464 aa32.57■■■□□ 2.8
CPSF1-209ENST00000532725 SAMD9Q5K651 1589 aa32.53■■■□□ 2.8
CPSF1-209ENST00000532725 ABCC2Q92887 1545 aa32.5■■■□□ 2.79
CPSF1-209ENST00000532725 PLB1Q6P1J6 1458 aa32.48■■■□□ 2.79
CPSF1-209ENST00000532725 MAPKBP1O60336 1514 aa32.44■■■□□ 2.78
CPSF1-209ENST00000532725 KDM5BQ9UGL1 1544 aa32.41■■■□□ 2.78
CPSF1-209ENST00000532725 ABCA8O94911 1581 aa32.41■■■□□ 2.78
CPSF1-209ENST00000532725 FHOD3Q2V2M9 1422 aa32.4■■■□□ 2.78
CPSF1-209ENST00000532725 EFCAB5A4FU69 1503 aa32.38■■■□□ 2.77
CPSF1-209ENST00000532725 ABCC10Q5T3U5 1492 aa32.34■■■□□ 2.77
CPSF1-209ENST00000532725 FAM69CQ0P6D2 419 aa32.33■■■□□ 2.77
CPSF1-209ENST00000532725 ASXL2Q76L83 1435 aa32.31■■■□□ 2.76
CPSF1-209ENST00000532725 ARHGAP35Q9NRY4 1499 aa32.3■■■□□ 2.76
CPSF1-209ENST00000532725 ZCCHC11Q5TAX3 1644 aaKnown RBP32.26■■■□□ 2.76
CPSF1-209ENST00000532725 KIF13AQ9H1H9 1805 aa32.23■■■□□ 2.75
CPSF1-209ENST00000532725 ARID3CA6NKF2 412 aa32.22■■■□□ 2.75
CPSF1-209ENST00000532725 ATP10BO94823 1461 aa32.22■■■□□ 2.75
CPSF1-209ENST00000532725 RAPGEF6Q8TEU7 1601 aa32.21■■■□□ 2.75
CPSF1-209ENST00000532725 DIP2BQ9P265 1576 aa32.2■■■□□ 2.75
CPSF1-209ENST00000532725 LOC105371045A0A1W2PR82 267 aa32.2■■■□□ 2.75
CPSF1-209ENST00000532725 NUP153P49790 1475 aaKnown RBP32.16■■■□□ 2.74
CPSF1-209ENST00000532725 FMN1Q68DA7 1419 aa32.14■■■□□ 2.74
CPSF1-209ENST00000532725 WDR7Q9Y4E6 1490 aa32.12■■■□□ 2.73
CPSF1-209ENST00000532725 EPRSP07814 1512 aaKnown RBP32.11■■■□□ 2.73
CPSF1-209ENST00000532725 CLIP1P30622 1438 aa32.11■■■□□ 2.73
CPSF1-209ENST00000532725 GLI2P10070 1586 aa32.09■■■□□ 2.73
CPSF1-209ENST00000532725 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.08■■■□□ 2.73
CPSF1-209ENST00000532725 HNRNPUL2Q1KMD3 747 aaKnown RBP32.08■■■□□ 2.73
CPSF1-209ENST00000532725 KCNH8Q96L42 1107 aa32.08■■■□□ 2.73
CPSF1-209ENST00000532725 ATP1B4Q9UN42 357 aaPredicted RBP32.02■■■□□ 2.72
CPSF1-209ENST00000532725 PLEKHD1A6NEE1 506 aa31.97■■■□□ 2.71
CPSF1-209ENST00000532725 CEP162Q5TB80 1403 aa31.97■■■□□ 2.71
CPSF1-209ENST00000532725 TSPOAP1O95153 1857 aa31.92■■■□□ 2.7
CPSF1-209ENST00000532725 CASKIN1Q8WXD9 1431 aa31.92■■■□□ 2.7
CPSF1-209ENST00000532725 CDK13Q14004 1512 aaKnown RBP31.9■■■□□ 2.7
CPSF1-209ENST00000532725 HECW1Q76N89 1606 aa31.89■■■□□ 2.7
CPSF1-209ENST00000532725 MAP3K4Q9Y6R4 1608 aa31.89■■■□□ 2.7
CPSF1-209ENST00000532725 CD109Q6YHK3 1445 aa31.87■■■□□ 2.69
CPSF1-209ENST00000532725 PPRC1Q5VV67 1664 aaKnown RBP31.85■■■□□ 2.69
CPSF1-209ENST00000532725 CDK11AQ9UQ88 783 aaPredicted RBP31.82■■■□□ 2.68
CPSF1-209ENST00000532725 PCF11O94913 1555 aaKnown RBP31.81■■■□□ 2.68
CPSF1-209ENST00000532725 CFAP43Q8NDM7 1665 aa31.79■■■□□ 2.68
CPSF1-209ENST00000532725 MAGI3Q5TCQ9 1506 aa31.79■■■□□ 2.68
CPSF1-209ENST00000532725 FYCO1Q9BQS8 1478 aa31.78■■■□□ 2.68
CPSF1-209ENST00000532725 TEX14Q8IWB6 1497 aa31.77■■■□□ 2.68
CPSF1-209ENST00000532725 ABCA9Q8IUA7 1624 aa31.76■■■□□ 2.67
CPSF1-209ENST00000532725 LRRIQ1Q96JM4 1722 aa31.75■■■□□ 2.67
CPSF1-209ENST00000532725 CCDC18Q5T9S5 1454 aa31.72■■■□□ 2.67
CPSF1-209ENST00000532725 TROQ12816 1431 aaPredicted RBP31.68■■■□□ 2.66
CPSF1-209ENST00000532725 COL17A1Q9UMD9 1497 aaPredicted RBP31.67■■■□□ 2.66
CPSF1-209ENST00000532725 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.67■■■□□ 2.66
CPSF1-209ENST00000532725 KDM6BO15054 1643 aa31.67■■■□□ 2.66
CPSF1-209ENST00000532725 VPS8Q8N3P4 1428 aa31.58■■■□□ 2.65
CPSF1-209ENST00000532725 PHLDB1Q86UU1 1377 aa31.58■■■□□ 2.65
CPSF1-209ENST00000532725 TTC37Q6PGP7 1564 aa31.57■■■□□ 2.64
CPSF1-209ENST00000532725 PLCH2O75038 1416 aa31.55■■■□□ 2.64
CPSF1-209ENST00000532725 NEO1Q92859 1461 aa31.54■■■□□ 2.64
CPSF1-209ENST00000532725 KIF14Q15058 1648 aa31.54■■■□□ 2.64
CPSF1-209ENST00000532725 ARAP3Q8WWN8 1544 aa31.52■■■□□ 2.64
CPSF1-209ENST00000532725 FANCAO15360 1455 aa31.47■■■□□ 2.63
CPSF1-209ENST00000532725 AKNAQ7Z591 1439 aa31.46■■■□□ 2.63
CPSF1-209ENST00000532725 EFCAB2Q5VUJ9 269 aa31.45■■■□□ 2.63
CPSF1-209ENST00000532725 MTUS2Q5JR59 1369 aa31.44■■■□□ 2.62
CPSF1-209ENST00000532725 RAPGEF3O95398 923 aa31.42■■■□□ 2.62
CPSF1-209ENST00000532725 MYO5CQ9NQX4 1742 aa31.38■■■□□ 2.61
CPSF1-209ENST00000532725 TIAM1Q13009 1591 aa31.34■■■□□ 2.61
CPSF1-209ENST00000532725 CFAP74Q9C0B2 1584 aa31.34■■■□□ 2.61
CPSF1-209ENST00000532725 DENND4BO75064 1496 aaPredicted RBP31.33■■■□□ 2.61
CPSF1-209ENST00000532725 MAP3K1Q13233 1512 aa31.32■■■□□ 2.6
CPSF1-209ENST00000532725 ARHGAP5Q13017 1502 aa31.31■■■□□ 2.6
CPSF1-209ENST00000532725 EHBP1L1Q8N3D4 1523 aa31.31■■■□□ 2.6
CPSF1-209ENST00000532725 GPATCH8Q9UKJ3 1502 aaKnown RBP31.31■■■□□ 2.6
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms