RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 CHIC1Q5VXU3 224 aa25.34■■□□□ 1.65
CPSF1-208ENST00000532560 ERCC6L2Q5T890 1561 aa25.31■■□□□ 1.64
CPSF1-208ENST00000532560 EEA1Q15075 1411 aa25.3■■□□□ 1.64
CPSF1-208ENST00000532560 PRXQ9BXM0 1461 aa25.29■■□□□ 1.64
CPSF1-208ENST00000532560 CYB5RLQ6IPT4 315 aa25.29■■□□□ 1.64
CPSF1-208ENST00000532560 JPH4Q96JJ6 628 aa25.27■■□□□ 1.64
CPSF1-208ENST00000532560 PRG4Q92954 1404 aaPredicted RBP25.27■■□□□ 1.64
CPSF1-208ENST00000532560 IQGAP2Q13576 1575 aa25.23■■□□□ 1.63
CPSF1-208ENST00000532560 CSRNP3Q8WYN3 585 aa25.19■■□□□ 1.62
CPSF1-208ENST00000532560 CTTNBP2Q8WZ74 1663 aa25.14■■□□□ 1.62
CPSF1-208ENST00000532560 UGGT2Q9NYU1 1516 aa25.1■■□□□ 1.61
CPSF1-208ENST00000532560 CARMIL2Q6F5E8 1435 aa25.07■■□□□ 1.6
CPSF1-208ENST00000532560 KIF21BO75037 1637 aa25.05■■□□□ 1.6
CPSF1-208ENST00000532560 FAM9AQ8IZU1 332 aaPredicted RBP25.05■■□□□ 1.6
CPSF1-208ENST00000532560 DISP1Q96F81 1524 aa25.04■■□□□ 1.6
CPSF1-208ENST00000532560 KIAA0556O60303 1618 aa25■■□□□ 1.59
CPSF1-208ENST00000532560 TNIKQ9UKE5 1360 aa24.98■■□□□ 1.59
CPSF1-208ENST00000532560 PTPRGP23470 1445 aa24.95■■□□□ 1.59
CPSF1-208ENST00000532560 GOLGA3Q08378 1498 aa24.94■■□□□ 1.58
CPSF1-208ENST00000532560 ADCY10Q96PN6 1610 aa24.91■■□□□ 1.58
CPSF1-208ENST00000532560 SAMD9Q5K651 1589 aa24.84■■□□□ 1.57
CPSF1-208ENST00000532560 UHRF1BP1LA0JNW5 1464 aa24.83■■□□□ 1.56
CPSF1-208ENST00000532560 TTBK1Q5TCY1 1321 aaPredicted RBP24.81■■□□□ 1.56
CPSF1-208ENST00000532560 UACAQ9BZF9 1416 aa24.8■■□□□ 1.56
CPSF1-208ENST00000532560 ABCC2Q92887 1545 aa24.8■■□□□ 1.56
CPSF1-208ENST00000532560 MAPKBP1O60336 1514 aa24.78■■□□□ 1.56
CPSF1-208ENST00000532560 TRHP20396 242 aaPredicted RBP24.76■■□□□ 1.55
CPSF1-208ENST00000532560 NPM1P06748 294 aaKnown RBP eCLIP24.75■■□□□ 1.55
CPSF1-208ENST00000532560 EFCAB5A4FU69 1503 aa24.73■■□□□ 1.55
CPSF1-208ENST00000532560 UBTFP17480 764 aaKnown RBP24.72■■□□□ 1.55
CPSF1-208ENST00000532560 ABCA8O94911 1581 aa24.71■■□□□ 1.55
CPSF1-208ENST00000532560 PLB1Q6P1J6 1458 aa24.7■■□□□ 1.55
CPSF1-208ENST00000532560 KDM5BQ9UGL1 1544 aa24.7■■□□□ 1.54
CPSF1-208ENST00000532560 EHMT2Q96KQ7 1210 aa24.69■■□□□ 1.54
CPSF1-208ENST00000532560 P3H3Q8IVL6 736 aa24.66■■□□□ 1.54
CPSF1-208ENST00000532560 FHOD3Q2V2M9 1422 aa24.64■■□□□ 1.54
CPSF1-208ENST00000532560 ZCCHC11Q5TAX3 1644 aaKnown RBP24.64■■□□□ 1.53
CPSF1-208ENST00000532560 ABCC10Q5T3U5 1492 aa24.64■■□□□ 1.53
CPSF1-208ENST00000532560 KIF13AQ9H1H9 1805 aa24.63■■□□□ 1.53
CPSF1-208ENST00000532560 RANGAP1P46060 587 aaPredicted RBP24.63■■□□□ 1.53
CPSF1-208ENST00000532560 DIP2BQ9P265 1576 aa24.62■■□□□ 1.53
CPSF1-208ENST00000532560 ASXL2Q76L83 1435 aa24.6■■□□□ 1.53
CPSF1-208ENST00000532560 ARHGAP35Q9NRY4 1499 aa24.58■■□□□ 1.52
CPSF1-208ENST00000532560 RAPGEF6Q8TEU7 1601 aa24.57■■□□□ 1.52
CPSF1-208ENST00000532560 FAM69CQ0P6D2 419 aa24.51■■□□□ 1.51
CPSF1-208ENST00000532560 WDR7Q9Y4E6 1490 aa24.5■■□□□ 1.51
CPSF1-208ENST00000532560 NUP153P49790 1475 aaKnown RBP24.49■■□□□ 1.51
CPSF1-208ENST00000532560 GLI2P10070 1586 aa24.49■■□□□ 1.51
CPSF1-208ENST00000532560 ATP10BO94823 1461 aa24.47■■□□□ 1.51
CPSF1-208ENST00000532560 FMN1Q68DA7 1419 aa24.47■■□□□ 1.51
CPSF1-208ENST00000532560 EPRSP07814 1512 aaKnown RBP24.46■■□□□ 1.51
CPSF1-208ENST00000532560 CLIP1P30622 1438 aa24.42■■□□□ 1.5
CPSF1-208ENST00000532560 ARID3CA6NKF2 412 aa24.38■■□□□ 1.49
CPSF1-208ENST00000532560 HECW1Q76N89 1606 aa24.38■■□□□ 1.49
CPSF1-208ENST00000532560 MAP3K4Q9Y6R4 1608 aa24.38■■□□□ 1.49
CPSF1-208ENST00000532560 TSPOAP1O95153 1857 aa24.34■■□□□ 1.49
CPSF1-208ENST00000532560 PPRC1Q5VV67 1664 aaKnown RBP24.33■■□□□ 1.49
CPSF1-208ENST00000532560 CFAP43Q8NDM7 1665 aa24.3■■□□□ 1.48
CPSF1-208ENST00000532560 CEP162Q5TB80 1403 aa24.3■■□□□ 1.48
CPSF1-208ENST00000532560 CDK13Q14004 1512 aaKnown RBP24.3■■□□□ 1.48
CPSF1-208ENST00000532560 PCF11O94913 1555 aaKnown RBP24.29■■□□□ 1.48
CPSF1-208ENST00000532560 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.29■■□□□ 1.48
CPSF1-208ENST00000532560 HNRNPUL2Q1KMD3 747 aaKnown RBP24.29■■□□□ 1.48
CPSF1-208ENST00000532560 CASKIN1Q8WXD9 1431 aa24.28■■□□□ 1.48
CPSF1-208ENST00000532560 KCNH8Q96L42 1107 aa24.26■■□□□ 1.47
CPSF1-208ENST00000532560 TEX14Q8IWB6 1497 aa24.25■■□□□ 1.47
CPSF1-208ENST00000532560 FYCO1Q9BQS8 1478 aa24.25■■□□□ 1.47
CPSF1-208ENST00000532560 ABCA9Q8IUA7 1624 aa24.24■■□□□ 1.47
CPSF1-208ENST00000532560 LOC105371045A0A1W2PR82 267 aa24.24■■□□□ 1.47
CPSF1-208ENST00000532560 CD109Q6YHK3 1445 aa24.23■■□□□ 1.47
CPSF1-208ENST00000532560 MAGI3Q5TCQ9 1506 aa24.23■■□□□ 1.47
CPSF1-208ENST00000532560 LRRIQ1Q96JM4 1722 aa24.22■■□□□ 1.47
CPSF1-208ENST00000532560 PLEKHD1A6NEE1 506 aa24.22■■□□□ 1.47
CPSF1-208ENST00000532560 CCDC18Q5T9S5 1454 aa24.21■■□□□ 1.47
CPSF1-208ENST00000532560 ATP1B4Q9UN42 357 aaPredicted RBP24.2■■□□□ 1.46
CPSF1-208ENST00000532560 KDM6BO15054 1643 aa24.2■■□□□ 1.46
CPSF1-208ENST00000532560 CDK11AQ9UQ88 783 aaPredicted RBP24.14■■□□□ 1.45
CPSF1-208ENST00000532560 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.13■■□□□ 1.45
CPSF1-208ENST00000532560 TROQ12816 1431 aaPredicted RBP24.11■■□□□ 1.45
CPSF1-208ENST00000532560 TTC37Q6PGP7 1564 aa24.11■■□□□ 1.45
CPSF1-208ENST00000532560 KIF14Q15058 1648 aa24.09■■□□□ 1.45
CPSF1-208ENST00000532560 COL17A1Q9UMD9 1497 aaPredicted RBP24.07■■□□□ 1.44
CPSF1-208ENST00000532560 NEO1Q92859 1461 aa24.05■■□□□ 1.44
CPSF1-208ENST00000532560 PHLDB1Q86UU1 1377 aa24.03■■□□□ 1.44
CPSF1-208ENST00000532560 VPS8Q8N3P4 1428 aa24.03■■□□□ 1.44
CPSF1-208ENST00000532560 ARAP3Q8WWN8 1544 aa24.02■■□□□ 1.44
CPSF1-208ENST00000532560 CFAP74Q9C0B2 1584 aa24■■□□□ 1.43
CPSF1-208ENST00000532560 MYO5CQ9NQX4 1742 aa23.98■■□□□ 1.43
CPSF1-208ENST00000532560 FANCAO15360 1455 aa23.97■■□□□ 1.43
CPSF1-208ENST00000532560 PLCH2O75038 1416 aa23.97■■□□□ 1.43
CPSF1-208ENST00000532560 AEBP2Q6ZN18 517 aaPredicted RBP23.96■■□□□ 1.43
CPSF1-208ENST00000532560 EHBP1L1Q8N3D4 1523 aa23.92■■□□□ 1.42
CPSF1-208ENST00000532560 AKNAQ7Z591 1439 aa23.92■■□□□ 1.42
CPSF1-208ENST00000532560 TIAM1Q13009 1591 aa23.9■■□□□ 1.42
CPSF1-208ENST00000532560 MTUS2Q5JR59 1369 aa23.9■■□□□ 1.42
CPSF1-208ENST00000532560 PREX2Q70Z35 1606 aa23.89■■□□□ 1.42
CPSF1-208ENST00000532560 FRMPD1Q5SYB0 1578 aa23.88■■□□□ 1.41
CPSF1-208ENST00000532560 ARHGAP5Q13017 1502 aa23.87■■□□□ 1.41
CPSF1-208ENST00000532560 CDC42BPBQ9Y5S2 1711 aa23.86■■□□□ 1.41
CPSF1-208ENST00000532560 DENND4BO75064 1496 aaPredicted RBP23.85■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 142.1 ms