RNA–Protein interactions for RNA: ENST00000531551.5

CTSB-222, Transcript of cathepsin B, human

TSL 1 (best)

Gene CTSB, Length 1,855 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTSB-222	ENST00000531551	NUP160	Q12769	1436 aa		28.63	■■■□□ 2.17
CTSB-222	ENST00000531551	RANGAP1	P46060	587 aa	Predicted RBP	28.58	■■■□□ 2.17
CTSB-222	ENST00000531551	KIAA0586	Q9BVV6	1533 aa		28.54	■■■□□ 2.16
CTSB-222	ENST00000531551	TNIK	Q9UKE5	1360 aa		28.51	■■■□□ 2.16
CTSB-222	ENST00000531551	CTTNBP2	Q8WZ74	1663 aa		28.49	■■■□□ 2.15
CTSB-222	ENST00000531551	IQGAP2	Q13576	1575 aa		28.47	■■■□□ 2.15
CTSB-222	ENST00000531551	CLASP1	Q7Z460	1538 aa		28.46	■■■□□ 2.15
CTSB-222	ENST00000531551	JPH4	Q96JJ6	628 aa		28.46	■■■□□ 2.15
CTSB-222	ENST00000531551	P3H3	Q8IVL6	736 aa		28.33	■■■□□ 2.13
CTSB-222	ENST00000531551	PRG4	Q92954	1404 aa	Predicted RBP	28.33	■■■□□ 2.13
CTSB-222	ENST00000531551	CEP162	Q5TB80	1403 aa		28.32	■■■□□ 2.12
CTSB-222	ENST00000531551	UGGT2	Q9NYU1	1516 aa		28.31	■■■□□ 2.12
CTSB-222	ENST00000531551	CLIP1	P30622	1438 aa		28.29	■■■□□ 2.12
CTSB-222	ENST00000531551	SHROOM2	Q13796	1616 aa		28.28	■■■□□ 2.12
CTSB-222	ENST00000531551	CARMIL2	Q6F5E8	1435 aa		28.26	■■■□□ 2.11
CTSB-222	ENST00000531551	TTBK1	Q5TCY1	1321 aa	Predicted RBP	28.26	■■■□□ 2.11
CTSB-222	ENST00000531551	DISP1	Q96F81	1524 aa		28.23	■■■□□ 2.11
CTSB-222	ENST00000531551	ARHGAP35	Q9NRY4	1499 aa		28.21	■■■□□ 2.11
CTSB-222	ENST00000531551	ERCC6L2	Q5T890	1561 aa		28.21	■■■□□ 2.11
CTSB-222	ENST00000531551	EFCAB5	A4FU69	1503 aa		28.19	■■■□□ 2.1
CTSB-222	ENST00000531551	KIAA0556	O60303	1618 aa		28.18	■■■□□ 2.1
CTSB-222	ENST00000531551	SAMD9	Q5K651	1589 aa		28.18	■■■□□ 2.1
CTSB-222	ENST00000531551	FHOD3	Q2V2M9	1422 aa		28.18	■■■□□ 2.1
CTSB-222	ENST00000531551	ARHGEF11	O15085	1522 aa		28.13	■■■□□ 2.09
CTSB-222	ENST00000531551	ARAP1	Q96P48	1450 aa		28.1	■■■□□ 2.09
CTSB-222	ENST00000531551	PTPRG	P23470	1445 aa		28.07	■■■□□ 2.08
CTSB-222	ENST00000531551	DNAJC5	Q9H3Z4	198 aa		28.06	■■■□□ 2.08
CTSB-222	ENST00000531551	RIMBP3C	A6NJZ7	1639 aa		28.04	■■■□□ 2.08
CTSB-222	ENST00000531551	RIMBP3B	A6NNM3	1639 aa		28.04	■■■□□ 2.08
CTSB-222	ENST00000531551	RIMBP3	Q9UFD9	1639 aa		28.04	■■■□□ 2.08
CTSB-222	ENST00000531551	FMN1	Q68DA7	1419 aa		27.98	■■■□□ 2.07
CTSB-222	ENST00000531551	CYB5RL	Q6IPT4	315 aa		27.98	■■■□□ 2.07
CTSB-222	ENST00000531551	ATP1B4	Q9UN42	357 aa	Predicted RBP	27.98	■■■□□ 2.07
CTSB-222	ENST00000531551	PLB1	Q6P1J6	1458 aa		27.92	■■■□□ 2.06
CTSB-222	ENST00000531551	VPS8	Q8N3P4	1428 aa		27.9	■■■□□ 2.06
CTSB-222	ENST00000531551	UACA	Q9BZF9	1416 aa		27.88	■■■□□ 2.05
CTSB-222	ENST00000531551	ARID3C	A6NKF2	412 aa		27.87	■■■□□ 2.05
CTSB-222	ENST00000531551	CASKIN1	Q8WXD9	1431 aa		27.82	■■■□□ 2.04
CTSB-222	ENST00000531551	ABCA8	O94911	1581 aa		27.82	■■■□□ 2.04
CTSB-222	ENST00000531551	PCF11	O94913	1555 aa	Known RBP	27.82	■■■□□ 2.04
CTSB-222	ENST00000531551	RAPGEF6	Q8TEU7	1601 aa		27.81	■■■□□ 2.04
CTSB-222	ENST00000531551	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	27.78	■■■□□ 2.04
CTSB-222	ENST00000531551	HNRNPUL2	Q1KMD3	747 aa	Known RBP	27.78	■■■□□ 2.04
CTSB-222	ENST00000531551	ABCC2	Q92887	1545 aa		27.77	■■■□□ 2.04
CTSB-222	ENST00000531551	FYCO1	Q9BQS8	1478 aa		27.77	■■■□□ 2.04
CTSB-222	ENST00000531551	NUP153	P49790	1475 aa	Known RBP	27.75	■■■□□ 2.03
CTSB-222	ENST00000531551	HECW1	Q76N89	1606 aa		27.74	■■■□□ 2.03
CTSB-222	ENST00000531551	UHRF1BP1L	A0JNW5	1464 aa		27.74	■■■□□ 2.03
CTSB-222	ENST00000531551	ADCY10	Q96PN6	1610 aa		27.73	■■■□□ 2.03
CTSB-222	ENST00000531551	APLP2	Q06481	763 aa		27.72	■■■□□ 2.03
CTSB-222	ENST00000531551	NPM1	P06748	294 aa	Known RBP eCLIP	27.72	■■■□□ 2.03
CTSB-222	ENST00000531551	EPRS	P07814	1512 aa	Known RBP	27.68	■■■□□ 2.02
CTSB-222	ENST00000531551	CDK13	Q14004	1512 aa	Known RBP	27.66	■■■□□ 2.02
CTSB-222	ENST00000531551	ATP10B	O94823	1461 aa		27.66	■■■□□ 2.02
CTSB-222	ENST00000531551	CCDC18	Q5T9S5	1454 aa		27.63	■■■□□ 2.01
CTSB-222	ENST00000531551	KDM5B	Q9UGL1	1544 aa		27.62	■■■□□ 2.01
CTSB-222	ENST00000531551	LRRIQ1	Q96JM4	1722 aa		27.58	■■■□□ 2.01
CTSB-222	ENST00000531551	ZCCHC11	Q5TAX3	1644 aa	Known RBP	27.58	■■■□□ 2.01
CTSB-222	ENST00000531551	CDK11A	Q9UQ88	783 aa	Predicted RBP	27.57	■■■□□ 2
CTSB-222	ENST00000531551	PLEKHD1	A6NEE1	506 aa		27.55	■■■□□ 2
CTSB-222	ENST00000531551	PPARGC1B	Q86YN6	1023 aa	Known RBP	27.55	■■■□□ 2
CTSB-222	ENST00000531551	TIAM1	Q13009	1591 aa		27.53	■■■□□ 2
CTSB-222	ENST00000531551	KANK4	Q5T7N3	995 aa	Predicted RBP	27.52	■■■□□ 2
CTSB-222	ENST00000531551	MTUS2	Q5JR59	1369 aa		27.5	■■□□□ 1.99
CTSB-222	ENST00000531551	MAP3K1	Q13233	1512 aa		27.48	■■□□□ 1.99
CTSB-222	ENST00000531551	CFAP43	Q8NDM7	1665 aa		27.48	■■□□□ 1.99
CTSB-222	ENST00000531551	KCNH8	Q96L42	1107 aa		27.48	■■□□□ 1.99
CTSB-222	ENST00000531551	ASXL2	Q76L83	1435 aa		27.48	■■□□□ 1.99
CTSB-222	ENST00000531551	LRRC9	Q6ZRR7	1453 aa		27.44	■■□□□ 1.98
CTSB-222	ENST00000531551	MAGI3	Q5TCQ9	1506 aa		27.44	■■□□□ 1.98
CTSB-222	ENST00000531551	TRO	Q12816	1431 aa	Predicted RBP	27.42	■■□□□ 1.98
CTSB-222	ENST00000531551	WDR7	Q9Y4E6	1490 aa		27.42	■■□□□ 1.98
CTSB-222	ENST00000531551	MAPKBP1	O60336	1514 aa		27.4	■■□□□ 1.98
CTSB-222	ENST00000531551	EHBP1L1	Q8N3D4	1523 aa		27.37	■■□□□ 1.97
CTSB-222	ENST00000531551	KIF14	Q15058	1648 aa		27.29	■■□□□ 1.96
CTSB-222	ENST00000531551	FAM69C	Q0P6D2	419 aa		27.28	■■□□□ 1.96
CTSB-222	ENST00000531551	NCOA2	Q15596	1464 aa		27.26	■■□□□ 1.95
CTSB-222	ENST00000531551	SUPT6H	Q7KZ85	1726 aa	Known RBP	27.25	■■□□□ 1.95
CTSB-222	ENST00000531551	TRH	P20396	242 aa	Predicted RBP	27.24	■■□□□ 1.95
CTSB-222	ENST00000531551	ABCC10	Q5T3U5	1492 aa		27.24	■■□□□ 1.95
CTSB-222	ENST00000531551	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	27.22	■■□□□ 1.95	5e-6	■□□□□ 9.5
CTSB-222	ENST00000531551	CCNB3	Q8WWL7	1395 aa		27.21	■■□□□ 1.95
CTSB-222	ENST00000531551	DIP2B	Q9P265	1576 aa		27.19	■■□□□ 1.94
CTSB-222	ENST00000531551	TTC37	Q6PGP7	1564 aa		27.18	■■□□□ 1.94
CTSB-222	ENST00000531551	PHLDB1	Q86UU1	1377 aa		27.17	■■□□□ 1.94
CTSB-222	ENST00000531551	CD109	Q6YHK3	1445 aa		27.14	■■□□□ 1.94
CTSB-222	ENST00000531551	ABCA9	Q8IUA7	1624 aa		27.14	■■□□□ 1.93
CTSB-222	ENST00000531551	GLI2	P10070	1586 aa		27.13	■■□□□ 1.93
CTSB-222	ENST00000531551	GPATCH8	Q9UKJ3	1502 aa	Known RBP	27.12	■■□□□ 1.93
CTSB-222	ENST00000531551	CFDP1	Q9UEE9	299 aa	Predicted RBP	27.11	■■□□□ 1.93
CTSB-222	ENST00000531551	ZNF777	Q9ULD5	760 aa	Predicted RBP	27.1	■■□□□ 1.93
CTSB-222	ENST00000531551	MYOM3	Q5VTT5	1437 aa		27.09	■■□□□ 1.93
CTSB-222	ENST00000531551	PLCH2	O75038	1416 aa		27.08	■■□□□ 1.93
CTSB-222	ENST00000531551	KIF13A	Q9H1H9	1805 aa		27.06	■■□□□ 1.92
CTSB-222	ENST00000531551	ARHGAP5	Q13017	1502 aa		27.06	■■□□□ 1.92
CTSB-222	ENST00000531551	MYO5C	Q9NQX4	1742 aa		27.04	■■□□□ 1.92
CTSB-222	ENST00000531551	EFCAB2	Q5VUJ9	269 aa		27.04	■■□□□ 1.92
CTSB-222	ENST00000531551	MAP3K4	Q9Y6R4	1608 aa		27.03	■■□□□ 1.92
CTSB-222	ENST00000531551	CDC42BPA	Q5VT25	1732 aa		27.03	■■□□□ 1.92
CTSB-222	ENST00000531551	ITSN2	Q9NZM3	1697 aa		27.01	■■□□□ 1.92

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