RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 B4GALNT3Q6L9W6 998 aa19.61■□□□□ 0.73
PCF11-204ENST00000530660 CCER2I3L3R5 266 aa19.59■□□□□ 0.73
PCF11-204ENST00000530660 RAPGEF2Q9Y4G8 1499 aa19.59■□□□□ 0.73
PCF11-204ENST00000530660 ANP32CO43423 234 aa19.59■□□□□ 0.73
PCF11-204ENST00000530660 PPP4R2Q9NY27 417 aa19.57■□□□□ 0.72
PCF11-204ENST00000530660 HNRNPUQ00839 825 aaKnown RBP eCLIP19.56■□□□□ 0.72
PCF11-204ENST00000530660 SYNJ1O43426 1573 aa19.54■□□□□ 0.72
PCF11-204ENST00000530660 KANK4Q5T7N3 995 aaPredicted RBP19.54■□□□□ 0.72
PCF11-204ENST00000530660 PKNOX2Q96KN3 472 aa19.51■□□□□ 0.71
PCF11-204ENST00000530660 BAZ1BQ9UIG0 1483 aaKnown RBP19.51■□□□□ 0.71
PCF11-204ENST00000530660 IPO9Q96P70 1041 aaKnown RBP19.48■□□□□ 0.71
PCF11-204ENST00000530660 ZBTB47Q9UFB7 747 aaPredicted RBP19.48■□□□□ 0.71
PCF11-204ENST00000530660 ANP32AP39687 249 aaKnown RBP19.45■□□□□ 0.7
PCF11-204ENST00000530660 WDR97A6NE52 1622 aa19.45■□□□□ 0.7
PCF11-204ENST00000530660 BRPF3Q9ULD4 1205 aa19.44■□□□□ 0.7
PCF11-204ENST00000530660 WASHC2AQ641Q2 1341 aa19.42■□□□□ 0.7
PCF11-204ENST00000530660 SIN3AQ96ST3 1273 aa19.41■□□□□ 0.7
PCF11-204ENST00000530660 RRBP1Q9P2E9 1410 aaKnown RBP19.39■□□□□ 0.69
PCF11-204ENST00000530660 TIMELESSQ9UNS1 1208 aa19.39■□□□□ 0.69
PCF11-204ENST00000530660 LAS1LQ9Y4W2 734 aaKnown RBP19.38■□□□□ 0.69
PCF11-204ENST00000530660 ARAP1Q96P48 1450 aa19.38■□□□□ 0.69
PCF11-204ENST00000530660 NEFMP07197 916 aa19.37■□□□□ 0.69
PCF11-204ENST00000530660 CUX2O14529 1486 aa19.35■□□□□ 0.69
PCF11-204ENST00000530660 C11orf95C9JLR9 678 aaPredicted RBP19.35■□□□□ 0.69
PCF11-204ENST00000530660 MAPKBP1O60336 1514 aa19.34■□□□□ 0.69
PCF11-204ENST00000530660 CCNB3Q8WWL7 1395 aa19.33■□□□□ 0.69
PCF11-204ENST00000530660 RAB3GAP2Q9H2M9 1393 aa19.32■□□□□ 0.68
PCF11-204ENST00000530660 WASHC2CQ9Y4E1 1318 aa19.31■□□□□ 0.68
PCF11-204ENST00000530660 NPM2Q86SE8 214 aaKnown RBP19.28■□□□□ 0.68
PCF11-204ENST00000530660 PLEKHG5O94827 1062 aa19.22■□□□□ 0.67
PCF11-204ENST00000530660 CCDC184Q52MB2 194 aa19.2■□□□□ 0.66
PCF11-204ENST00000530660 USP35Q9P2H5 1018 aa19.2■□□□□ 0.66
PCF11-204ENST00000530660 UNC13AQ9UPW8 1703 aa19.2■□□□□ 0.66
PCF11-204ENST00000530660 PRXQ9BXM0 1461 aa19.19■□□□□ 0.66
PCF11-204ENST00000530660 PABPN1Q86U42 306 aaKnown RBP eCLIP19.18■□□□□ 0.66
PCF11-204ENST00000530660 ERICH3Q5RHP9 1530 aa19.17■□□□□ 0.66
PCF11-204ENST00000530660 FAM9BQ8IZU0 186 aa19.15■□□□□ 0.66
PCF11-204ENST00000530660 GSE1Q14687 1217 aa19.15■□□□□ 0.66
PCF11-204ENST00000530660 ZMYND15Q9H091 742 aa19.15■□□□□ 0.66
PCF11-204ENST00000530660 RSPH6AQ9H0K4 717 aa19.15■□□□□ 0.66
PCF11-204ENST00000530660 SETD5Q9C0A6 1442 aa19.14■□□□□ 0.66
PCF11-204ENST00000530660 TOP2BQ02880 1626 aa19.13■□□□□ 0.65
PCF11-204ENST00000530660 VSIG10Q8N0Z9 540 aa19.12■□□□□ 0.65
PCF11-204ENST00000530660 ARHGAP35Q9NRY4 1499 aa19.09■□□□□ 0.65
PCF11-204ENST00000530660 PEG3Q9GZU2 1588 aa19.09■□□□□ 0.65
PCF11-204ENST00000530660 FRAT1Q92837 279 aaPredicted RBP19.08■□□□□ 0.65
PCF11-204ENST00000530660 FAM50AQ14320 339 aaKnown RBP19.07■□□□□ 0.64
PCF11-204ENST00000530660 PPM1GO15355 546 aaPredicted RBP19.07■□□□□ 0.64
PCF11-204ENST00000530660 PODXL2Q9NZ53 605 aa19.07■□□□□ 0.64
PCF11-204ENST00000530660 AKNAQ7Z591 1439 aa19.07■□□□□ 0.64
PCF11-204ENST00000530660 GLIPR1L2Q4G1C9 344 aa19.03■□□□□ 0.64
PCF11-204ENST00000530660 ZBED9Q6R2W3 1325 aa19.03■□□□□ 0.64
PCF11-204ENST00000530660 PHLDB1Q86UU1 1377 aa19.01■□□□□ 0.63
PCF11-204ENST00000530660 ATAD2BQ9ULI0 1458 aa19■□□□□ 0.63
PCF11-204ENST00000530660 BIVM-ERCC5R4GMW8 1640 aa18.99■□□□□ 0.63
PCF11-204ENST00000530660 NFKBIBQ15653 356 aa18.99■□□□□ 0.63
PCF11-204ENST00000530660 MRS2Q9HD23 443 aa18.99■□□□□ 0.63
PCF11-204ENST00000530660 SENP3-EIF4A1A0A087X0R7 540 aa18.98■□□□□ 0.63
PCF11-204ENST00000530660 FAM43AQ8N2R8 423 aa18.98■□□□□ 0.63
PCF11-204ENST00000530660 DCAF11Q8TEB1 546 aa18.98■□□□□ 0.63
PCF11-204ENST00000530660 PDE4AP27815 886 aa18.96■□□□□ 0.63
PCF11-204ENST00000530660 TIAM1Q13009 1591 aa18.96■□□□□ 0.63
PCF11-204ENST00000530660 NCAPD3P42695 1498 aa18.95■□□□□ 0.62
PCF11-204ENST00000530660 KIF27Q86VH2 1401 aa18.94■□□□□ 0.62
PCF11-204ENST00000530660 TONSLQ96HA7 1378 aa18.94■□□□□ 0.62
PCF11-204ENST00000530660 SLC4A3P48751 1232 aa18.94■□□□□ 0.62
PCF11-204ENST00000530660 BICRAQ9NZM4 1560 aa18.93■□□□□ 0.62
PCF11-204ENST00000530660 LRRC9Q6ZRR7 1453 aa18.92■□□□□ 0.62
PCF11-204ENST00000530660 BACH2Q9BYV9 841 aa18.9■□□□□ 0.62
PCF11-204ENST00000530660 PRKRIP1Q9H875 184 aaPredicted RBP18.89■□□□□ 0.61
PCF11-204ENST00000530660 CUX1P39880 1505 aa18.87■□□□□ 0.61
PCF11-204ENST00000530660 ATP1B4Q9UN42 357 aaPredicted RBP18.87■□□□□ 0.61
PCF11-204ENST00000530660 RNF123Q5XPI4 1314 aa18.86■□□□□ 0.61
PCF11-204ENST00000530660 RRAGDQ9NQL2 400 aaPredicted RBP18.85■□□□□ 0.61
PCF11-204ENST00000530660 TCERG1O14776 1098 aaKnown RBP18.85■□□□□ 0.61
PCF11-204ENST00000530660 HSPA5P11021 654 aaKnown RBP18.85■□□□□ 0.61
PCF11-204ENST00000530660 NUDCQ9Y266 331 aa18.85■□□□□ 0.61
PCF11-204ENST00000530660 SMG6Q86US8 1419 aaKnown RBP18.85■□□□□ 0.61
PCF11-204ENST00000530660 MAP3K1Q13233 1512 aa18.84■□□□□ 0.61
PCF11-204ENST00000530660 CNGB1Q14028 1251 aaPredicted RBP18.83■□□□□ 0.6
PCF11-204ENST00000530660 P3H3Q8IVL6 736 aa18.82■□□□□ 0.6
PCF11-204ENST00000530660 FRAT2O75474 233 aaPredicted RBP18.81■□□□□ 0.6
PCF11-204ENST00000530660 HSP90AA2PQ14568 343 aaPredicted RBP18.81■□□□□ 0.6
PCF11-204ENST00000530660 SKAP1Q86WV1 359 aa18.81■□□□□ 0.6
PCF11-204ENST00000530660 CNTLNQ9NXG0 1405 aa18.78■□□□□ 0.6
PCF11-204ENST00000530660 EXOC6Q8TAG9 804 aa18.78■□□□□ 0.6
PCF11-204ENST00000530660 FHAD1B1AJZ9 1412 aa18.77■□□□□ 0.6
PCF11-204ENST00000530660 NAP1L5Q96NT1 182 aaPredicted RBP18.77■□□□□ 0.6
PCF11-204ENST00000530660 DDRGK1Q96HY6 314 aa18.77■□□□□ 0.59
PCF11-204ENST00000530660 DAXXQ9UER7 740 aaPredicted RBP18.74■□□□□ 0.59
PCF11-204ENST00000530660 IGF1RP08069 1367 aa18.72■□□□□ 0.59
PCF11-204ENST00000530660 CCDC18Q5T9S5 1454 aa18.72■□□□□ 0.59
PCF11-204ENST00000530660 MS4A1P11836 297 aa18.71■□□□□ 0.59
PCF11-204ENST00000530660 PCF11O94913 1555 aaKnown RBP18.71■□□□□ 0.59
PCF11-204ENST00000530660 A0A0U1RQG5 324 aaPredicted RBP18.71■□□□□ 0.58
PCF11-204ENST00000530660 RRP9O43818 475 aaKnown RBP18.7■□□□□ 0.58
PCF11-204ENST00000530660 HSP90AA1P07900 732 aaKnown RBP18.7■□□□□ 0.58
PCF11-204ENST00000530660 NCOA2Q15596 1464 aa18.69■□□□□ 0.58
PCF11-204ENST00000530660 SLC24A1O60721 1099 aa18.69■□□□□ 0.58
PCF11-204ENST00000530660 CFAP43Q8NDM7 1665 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms