RNA–Protein interactions for RNA: ENST00000528165.5

CAPN1-214, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 2,828 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-214ENST00000528165 TRIM52Q96A61 297 aa20.69■□□□□ 0.9
CAPN1-214ENST00000528165 KIF27Q86VH2 1401 aa20.67■□□□□ 0.9
CAPN1-214ENST00000528165 ANP32CO43423 234 aa20.67■□□□□ 0.9
CAPN1-214ENST00000528165 SIN3AQ96ST3 1273 aa20.66■□□□□ 0.9
CAPN1-214ENST00000528165 TIMELESSQ9UNS1 1208 aa20.63■□□□□ 0.89
CAPN1-214ENST00000528165 TIAM1Q13009 1591 aa20.58■□□□□ 0.89
CAPN1-214ENST00000528165 HIRIP3Q9BW71 556 aaPredicted RBP20.58■□□□□ 0.88
CAPN1-214ENST00000528165 MAP3K1Q13233 1512 aa20.57■□□□□ 0.88
CAPN1-214ENST00000528165 MSH5O43196 834 aa20.56■□□□□ 0.88
CAPN1-214ENST00000528165 CUX1P39880 1505 aa20.56■□□□□ 0.88
CAPN1-214ENST00000528165 FAM50AQ14320 339 aaKnown RBP20.55■□□□□ 0.88
CAPN1-214ENST00000528165 PHLDB1Q86UU1 1377 aa20.52■□□□□ 0.88
CAPN1-214ENST00000528165 LRRC9Q6ZRR7 1453 aa20.52■□□□□ 0.87
CAPN1-214ENST00000528165 FANCIQ9NVI1 1328 aa20.51■□□□□ 0.87
CAPN1-214ENST00000528165 ERICH6Q7L0X2 663 aa20.5■□□□□ 0.87
CAPN1-214ENST00000528165 CDK11AQ9UQ88 783 aaPredicted RBP20.49■□□□□ 0.87
CAPN1-214ENST00000528165 TONSLQ96HA7 1378 aa20.41■□□□□ 0.86
CAPN1-214ENST00000528165 HNRNPUQ00839 825 aaKnown RBP eCLIP20.41■□□□□ 0.86
CAPN1-214ENST00000528165 FHAD1B1AJZ9 1412 aa20.39■□□□□ 0.85
CAPN1-214ENST00000528165 IRX6P78412 446 aaPredicted RBP20.38■□□□□ 0.85
CAPN1-214ENST00000528165 IGF1RP08069 1367 aa20.37■□□□□ 0.85
CAPN1-214ENST00000528165 CFAP43Q8NDM7 1665 aa20.35■□□□□ 0.85
CAPN1-214ENST00000528165 ATP1B4Q9UN42 357 aaPredicted RBP20.34■□□□□ 0.85
CAPN1-214ENST00000528165 ERICH6BQ5W0A0 696 aa20.33■□□□□ 0.84
CAPN1-214ENST00000528165 MYT1LQ9UL68 1186 aa20.33■□□□□ 0.84
CAPN1-214ENST00000528165 CARMIL1Q5VZK9 1371 aa20.31■□□□□ 0.84
CAPN1-214ENST00000528165 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.31■□□□□ 0.84
CAPN1-214ENST00000528165 PCF11O94913 1555 aaKnown RBP20.3■□□□□ 0.84
CAPN1-214ENST00000528165 CFTRP13569 1480 aa20.3■□□□□ 0.84
CAPN1-214ENST00000528165 HMGXB3Q12766 1538 aa20.29■□□□□ 0.84
CAPN1-214ENST00000528165 PPP4R2Q9NY27 417 aa20.28■□□□□ 0.84
CAPN1-214ENST00000528165 P3H3Q8IVL6 736 aa20.27■□□□□ 0.84
CAPN1-214ENST00000528165 NCAPD3P42695 1498 aa20.26■□□□□ 0.83
CAPN1-214ENST00000528165 CCDC18Q5T9S5 1454 aa20.25■□□□□ 0.83
CAPN1-214ENST00000528165 UACAQ9BZF9 1416 aa20.23■□□□□ 0.83
CAPN1-214ENST00000528165 FYCO1Q9BQS8 1478 aa20.21■□□□□ 0.83
CAPN1-214ENST00000528165 FGD6Q6ZV73 1430 aa20.19■□□□□ 0.82
CAPN1-214ENST00000528165 HFM1A2PYH4 1435 aa20.18■□□□□ 0.82
CAPN1-214ENST00000528165 FHOD3Q2V2M9 1422 aa20.18■□□□□ 0.82
CAPN1-214ENST00000528165 DEKP35659 375 aaKnown RBP20.17■□□□□ 0.82
CAPN1-214ENST00000528165 WASHC2AQ641Q2 1341 aa20.16■□□□□ 0.82
CAPN1-214ENST00000528165 CASKIN1Q8WXD9 1431 aa20.16■□□□□ 0.82
CAPN1-214ENST00000528165 FGD5Q6ZNL6 1462 aa20.16■□□□□ 0.82
CAPN1-214ENST00000528165 PTPN23Q9H3S7 1636 aa20.14■□□□□ 0.82
CAPN1-214ENST00000528165 HSPA5P11021 654 aaKnown RBP20.14■□□□□ 0.81
CAPN1-214ENST00000528165 B4GALNT3Q6L9W6 998 aa20.14■□□□□ 0.81
CAPN1-214ENST00000528165 AQRO60306 1485 aaKnown RBP eCLIP20.12■□□□□ 0.813e-7■■■■□ 24.7
CAPN1-214ENST00000528165 KDM5BQ9UGL1 1544 aa20.12■□□□□ 0.81
CAPN1-214ENST00000528165 PTPRKQ15262 1439 aa20.11■□□□□ 0.81
CAPN1-214ENST00000528165 EFCAB5A4FU69 1503 aa20.1■□□□□ 0.81
CAPN1-214ENST00000528165 PRDM2Q13029 1718 aa20.1■□□□□ 0.81
CAPN1-214ENST00000528165 NOP58Q9Y2X3 529 aaKnown RBP20.09■□□□□ 0.81
CAPN1-214ENST00000528165 NAIPQ13075 1403 aa20.09■□□□□ 0.81
CAPN1-214ENST00000528165 CNTLNQ9NXG0 1405 aa20.09■□□□□ 0.81
CAPN1-214ENST00000528165 EIF4G2P78344 907 aaKnown RBP eCLIP20.09■□□□□ 0.81
CAPN1-214ENST00000528165 CCDC184Q52MB2 194 aa20.08■□□□□ 0.81
CAPN1-214ENST00000528165 MTUS2Q5JR59 1369 aa20.08■□□□□ 0.8
CAPN1-214ENST00000528165 FAM9BQ8IZU0 186 aa20.08■□□□□ 0.8
CAPN1-214ENST00000528165 NCOA2Q15596 1464 aa20.08■□□□□ 0.8
CAPN1-214ENST00000528165 ZBED9Q6R2W3 1325 aa20.07■□□□□ 0.8
CAPN1-214ENST00000528165 FMN1Q68DA7 1419 aa20.06■□□□□ 0.8
CAPN1-214ENST00000528165 MRS2Q9HD23 443 aa20.05■□□□□ 0.8
CAPN1-214ENST00000528165 PRKRIP1Q9H875 184 aaPredicted RBP20.04■□□□□ 0.8
CAPN1-214ENST00000528165 NBR1Q14596 966 aa20.03■□□□□ 0.8
CAPN1-214ENST00000528165 MYOM3Q5VTT5 1437 aa19.99■□□□□ 0.79
CAPN1-214ENST00000528165 PAK3O75914 559 aaPredicted RBP19.98■□□□□ 0.79
CAPN1-214ENST00000528165 CCDC7Q96M83 1385 aa19.97■□□□□ 0.79
CAPN1-214ENST00000528165 CADPSQ9ULU8 1353 aa19.97■□□□□ 0.79
CAPN1-214ENST00000528165 SNAPC4Q5SXM2 1469 aa19.97■□□□□ 0.79
CAPN1-214ENST00000528165 NCOA1Q15788 1441 aa19.96■□□□□ 0.79
CAPN1-214ENST00000528165 C11orf95C9JLR9 678 aaPredicted RBP19.94■□□□□ 0.78
CAPN1-214ENST00000528165 ANP32AP39687 249 aaKnown RBP19.94■□□□□ 0.78
CAPN1-214ENST00000528165 RRP7BPQ9NSQ0 103 aa19.94■□□□□ 0.78
CAPN1-214ENST00000528165 CTTNBP2Q8WZ74 1663 aa19.92■□□□□ 0.78
CAPN1-214ENST00000528165 HECW1Q76N89 1606 aa19.91■□□□□ 0.78
CAPN1-214ENST00000528165 L3MBTL2Q969R5 705 aa19.9■□□□□ 0.78
CAPN1-214ENST00000528165 RTL5Q5HYW3 569 aaPredicted RBP19.9■□□□□ 0.78
CAPN1-214ENST00000528165 IPO9Q96P70 1041 aaKnown RBP19.9■□□□□ 0.78
CAPN1-214ENST00000528165 SUPT6HQ7KZ85 1726 aaKnown RBP19.9■□□□□ 0.78
CAPN1-214ENST00000528165 CCDC136Q96JN2 1154 aa19.89■□□□□ 0.77
CAPN1-214ENST00000528165 CHIC2Q9UKJ5 165 aa19.89■□□□□ 0.77
CAPN1-214ENST00000528165 DENND4BO75064 1496 aaPredicted RBP19.89■□□□□ 0.77
CAPN1-214ENST00000528165 SMG6Q86US8 1419 aaKnown RBP19.88■□□□□ 0.77
CAPN1-214ENST00000528165 CC2D2AQ9P2K1 1620 aa19.87■□□□□ 0.77
CAPN1-214ENST00000528165 CUL7Q14999 1698 aa19.87■□□□□ 0.77
CAPN1-214ENST00000528165 AKNAQ7Z591 1439 aa19.86■□□□□ 0.77
CAPN1-214ENST00000528165 EHBP1L1Q8N3D4 1523 aa19.86■□□□□ 0.77
CAPN1-214ENST00000528165 ZBTB47Q9UFB7 747 aaPredicted RBP19.86■□□□□ 0.77
CAPN1-214ENST00000528165 ABCA10Q8WWZ4 1543 aa19.86■□□□□ 0.77
CAPN1-214ENST00000528165 MPHOSPH9Q99550 1183 aa19.86■□□□□ 0.77
CAPN1-214ENST00000528165 RAD54L2Q9Y4B4 1467 aa19.85■□□□□ 0.77
CAPN1-214ENST00000528165 GCC2Q8IWJ2 1684 aa19.85■□□□□ 0.77
CAPN1-214ENST00000528165 NUDCQ9Y266 331 aa19.84■□□□□ 0.77
CAPN1-214ENST00000528165 KIF7Q2M1P5 1343 aa19.83■□□□□ 0.77
CAPN1-214ENST00000528165 LRRIQ1Q96JM4 1722 aa19.83■□□□□ 0.77
CAPN1-214ENST00000528165 GRIN2BQ13224 1484 aa19.83■□□□□ 0.76
CAPN1-214ENST00000528165 UGGT2Q9NYU1 1516 aa19.82■□□□□ 0.76
CAPN1-214ENST00000528165 THOC2Q8NI27 1593 aaKnown RBP19.82■□□□□ 0.76
CAPN1-214ENST00000528165 RNF123Q5XPI4 1314 aa19.8■□□□□ 0.76
CAPN1-214ENST00000528165 PRKCSHP14314 528 aaPredicted RBP19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms