RNA–Protein interactions for RNA: ENST00000527897.1

CAPN1-213, Transcript of calpain 1, humanhuman

TSL 3

Gene CAPN1, Length 879 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-213ENST00000527897 TRHP20396 242 aaPredicted RBP26.49■■□□□ 1.83
CAPN1-213ENST00000527897 JPH4Q96JJ6 628 aa26.49■■□□□ 1.83
CAPN1-213ENST00000527897 PRG4Q92954 1404 aaPredicted RBP26.48■■□□□ 1.83
CAPN1-213ENST00000527897 KIAA0586Q9BVV6 1533 aa26.4■■□□□ 1.82
CAPN1-213ENST00000527897 RAPGEF2Q9Y4G8 1499 aa26.3■■□□□ 1.8
CAPN1-213ENST00000527897 IQGAP2Q13576 1575 aa26.25■■□□□ 1.79
CAPN1-213ENST00000527897 TTBK1Q5TCY1 1321 aaPredicted RBP26.24■■□□□ 1.79
CAPN1-213ENST00000527897 CARMIL2Q6F5E8 1435 aa26.17■■□□□ 1.78
CAPN1-213ENST00000527897 NPM1P06748 294 aaKnown RBP eCLIP26.13■■□□□ 1.77
CAPN1-213ENST00000527897 PTPRGP23470 1445 aa26.12■■□□□ 1.77
CAPN1-213ENST00000527897 ADCY10Q96PN6 1610 aa26.11■■□□□ 1.77
CAPN1-213ENST00000527897 CTTNBP2Q8WZ74 1663 aa26.1■■□□□ 1.77
CAPN1-213ENST00000527897 PRXQ9BXM0 1461 aa26.1■■□□□ 1.77
CAPN1-213ENST00000527897 TNIKQ9UKE5 1360 aa26.08■■□□□ 1.77
CAPN1-213ENST00000527897 DISP1Q96F81 1524 aa26.06■■□□□ 1.76
CAPN1-213ENST00000527897 FAM9AQ8IZU1 332 aaPredicted RBP26.06■■□□□ 1.76
CAPN1-213ENST00000527897 CSRNP3Q8WYN3 585 aa26.06■■□□□ 1.76
CAPN1-213ENST00000527897 UGGT2Q9NYU1 1516 aa26.05■■□□□ 1.76
CAPN1-213ENST00000527897 KIAA0556O60303 1618 aa25.99■■□□□ 1.75
CAPN1-213ENST00000527897 EEA1Q15075 1411 aa25.98■■□□□ 1.75
CAPN1-213ENST00000527897 KIF13AQ9H1H9 1805 aa25.98■■□□□ 1.75
CAPN1-213ENST00000527897 CHIC1Q5VXU3 224 aa25.97■■□□□ 1.75
CAPN1-213ENST00000527897 MAPKBP1O60336 1514 aa25.95■■□□□ 1.74
CAPN1-213ENST00000527897 FAM69CQ0P6D2 419 aa25.93■■□□□ 1.74
CAPN1-213ENST00000527897 UACAQ9BZF9 1416 aa25.91■■□□□ 1.74
CAPN1-213ENST00000527897 GOLGA3Q08378 1498 aa25.91■■□□□ 1.74
CAPN1-213ENST00000527897 ABCC2Q92887 1545 aa25.89■■□□□ 1.74
CAPN1-213ENST00000527897 ABCC10Q5T3U5 1492 aa25.88■■□□□ 1.73
CAPN1-213ENST00000527897 UHRF1BP1LA0JNW5 1464 aa25.86■■□□□ 1.73
CAPN1-213ENST00000527897 DIP2BQ9P265 1576 aa25.86■■□□□ 1.73
CAPN1-213ENST00000527897 RANGAP1P46060 587 aaPredicted RBP25.84■■□□□ 1.73
CAPN1-213ENST00000527897 P3H3Q8IVL6 736 aa25.84■■□□□ 1.73
CAPN1-213ENST00000527897 EHMT2Q96KQ7 1210 aa25.83■■□□□ 1.73
CAPN1-213ENST00000527897 ASXL2Q76L83 1435 aa25.8■■□□□ 1.72
CAPN1-213ENST00000527897 PLB1Q6P1J6 1458 aa25.79■■□□□ 1.72
CAPN1-213ENST00000527897 TSPOAP1O95153 1857 aa25.77■■□□□ 1.72
CAPN1-213ENST00000527897 ZCCHC11Q5TAX3 1644 aaKnown RBP25.77■■□□□ 1.72
CAPN1-213ENST00000527897 KIF21BO75037 1637 aa25.76■■□□□ 1.71
CAPN1-213ENST00000527897 KDM5BQ9UGL1 1544 aa25.75■■□□□ 1.71
CAPN1-213ENST00000527897 ABCA8O94911 1581 aa25.7■■□□□ 1.71
CAPN1-213ENST00000527897 SAMD9Q5K651 1589 aa25.69■■□□□ 1.7
CAPN1-213ENST00000527897 ARID3CA6NKF2 412 aa25.67■■□□□ 1.7
CAPN1-213ENST00000527897 UBTFP17480 764 aaKnown RBP25.67■■□□□ 1.7
CAPN1-213ENST00000527897 EPRSP07814 1512 aaKnown RBP25.62■■□□□ 1.69
CAPN1-213ENST00000527897 FHOD3Q2V2M9 1422 aa25.61■■□□□ 1.69
CAPN1-213ENST00000527897 GLI2P10070 1586 aa25.61■■□□□ 1.69
CAPN1-213ENST00000527897 WDR7Q9Y4E6 1490 aa25.6■■□□□ 1.69
CAPN1-213ENST00000527897 KDM6BO15054 1643 aa25.57■■□□□ 1.68
CAPN1-213ENST00000527897 KCNH8Q96L42 1107 aa25.57■■□□□ 1.68
CAPN1-213ENST00000527897 RAPGEF6Q8TEU7 1601 aa25.56■■□□□ 1.68
CAPN1-213ENST00000527897 PPRC1Q5VV67 1664 aaKnown RBP25.53■■□□□ 1.68
CAPN1-213ENST00000527897 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.53■■□□□ 1.68
CAPN1-213ENST00000527897 HNRNPUL2Q1KMD3 747 aaKnown RBP25.53■■□□□ 1.68
CAPN1-213ENST00000527897 EFCAB5A4FU69 1503 aa25.53■■□□□ 1.68
CAPN1-213ENST00000527897 ATP10BO94823 1461 aa25.52■■□□□ 1.68
CAPN1-213ENST00000527897 MAP3K4Q9Y6R4 1608 aa25.52■■□□□ 1.68
CAPN1-213ENST00000527897 NUP153P49790 1475 aaKnown RBP25.44■■□□□ 1.66
CAPN1-213ENST00000527897 TEX14Q8IWB6 1497 aa25.43■■□□□ 1.66
CAPN1-213ENST00000527897 CD109Q6YHK3 1445 aa25.42■■□□□ 1.66
CAPN1-213ENST00000527897 CFAP43Q8NDM7 1665 aa25.42■■□□□ 1.66
CAPN1-213ENST00000527897 AEBP2Q6ZN18 517 aaPredicted RBP25.38■■□□□ 1.65
CAPN1-213ENST00000527897 ATP1B4Q9UN42 357 aaPredicted RBP25.38■■□□□ 1.65
CAPN1-213ENST00000527897 ARHGAP35Q9NRY4 1499 aa25.38■■□□□ 1.65
CAPN1-213ENST00000527897 COL17A1Q9UMD9 1497 aaPredicted RBP25.32■■□□□ 1.64
CAPN1-213ENST00000527897 MAGI3Q5TCQ9 1506 aa25.32■■□□□ 1.64
CAPN1-213ENST00000527897 FMN1Q68DA7 1419 aa25.31■■□□□ 1.64
CAPN1-213ENST00000527897 PLEKHD1A6NEE1 506 aa25.31■■□□□ 1.64
CAPN1-213ENST00000527897 CDK13Q14004 1512 aaKnown RBP25.29■■□□□ 1.64
CAPN1-213ENST00000527897 ABCA9Q8IUA7 1624 aa25.28■■□□□ 1.64
CAPN1-213ENST00000527897 HECW1Q76N89 1606 aa25.26■■□□□ 1.63
CAPN1-213ENST00000527897 CLIP1P30622 1438 aa25.17■■□□□ 1.62
CAPN1-213ENST00000527897 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.14■■□□□ 1.62
CAPN1-213ENST00000527897 CDK11AQ9UQ88 783 aaPredicted RBP25.13■■□□□ 1.61
CAPN1-213ENST00000527897 PCF11O94913 1555 aaKnown RBP25.13■■□□□ 1.61
CAPN1-213ENST00000527897 TTC37Q6PGP7 1564 aa25.13■■□□□ 1.61
CAPN1-213ENST00000527897 LRRIQ1Q96JM4 1722 aa25.12■■□□□ 1.61
CAPN1-213ENST00000527897 ARAP3Q8WWN8 1544 aa25.11■■□□□ 1.61
CAPN1-213ENST00000527897 NEO1Q92859 1461 aa25.09■■□□□ 1.61
CAPN1-213ENST00000527897 KDM4FA0A1W2PPD8 638 aa25.09■■□□□ 1.61
CAPN1-213ENST00000527897 PHLDB1Q86UU1 1377 aa25.08■■□□□ 1.61
CAPN1-213ENST00000527897 CASKIN1Q8WXD9 1431 aa25.07■■□□□ 1.6
CAPN1-213ENST00000527897 RAPGEF3O95398 923 aa25.07■■□□□ 1.6
CAPN1-213ENST00000527897 FANCAO15360 1455 aa25.04■■□□□ 1.6
CAPN1-213ENST00000527897 KIF14Q15058 1648 aa25.03■■□□□ 1.6
CAPN1-213ENST00000527897 TROQ12816 1431 aaPredicted RBP25.03■■□□□ 1.6
CAPN1-213ENST00000527897 ADGRL1O94910 1474 aa25.02■■□□□ 1.6
CAPN1-213ENST00000527897 CFAP74Q9C0B2 1584 aa25.02■■□□□ 1.6
CAPN1-213ENST00000527897 CCDC18Q5T9S5 1454 aa25.02■■□□□ 1.6
CAPN1-213ENST00000527897 AKNAQ7Z591 1439 aa25.01■■□□□ 1.59
CAPN1-213ENST00000527897 FYCO1Q9BQS8 1478 aa25.01■■□□□ 1.59
CAPN1-213ENST00000527897 MYO5CQ9NQX4 1742 aa24.98■■□□□ 1.59
CAPN1-213ENST00000527897 CEP162Q5TB80 1403 aa24.98■■□□□ 1.59
CAPN1-213ENST00000527897 LOC105371045A0A1W2PR82 267 aa24.98■■□□□ 1.59
CAPN1-213ENST00000527897 DENND4BO75064 1496 aaPredicted RBP24.96■■□□□ 1.59
CAPN1-213ENST00000527897 PLCH2O75038 1416 aa24.96■■□□□ 1.59
CAPN1-213ENST00000527897 FRMPD1Q5SYB0 1578 aa24.96■■□□□ 1.59
CAPN1-213ENST00000527897 RICTORQ6R327 1708 aa24.92■■□□□ 1.58
CAPN1-213ENST00000527897 EFCAB2Q5VUJ9 269 aa24.91■■□□□ 1.58
CAPN1-213ENST00000527897 ARHGAP5Q13017 1502 aa24.9■■□□□ 1.58
CAPN1-213ENST00000527897 SCAPERQ9BY12 1400 aa24.88■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms