RNA–Protein interactions for RNA: ENST00000527720.5

USH1C-207, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,278 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-207ENST00000527720 CLSPNQ9HAW4 1339 aa22.9■■□□□ 1.26
USH1C-207ENST00000527720 CCNB3Q8WWL7 1395 aa22.89■■□□□ 1.25
USH1C-207ENST00000527720 PCF11O94913 1555 aaKnown RBP22.88■■□□□ 1.25
USH1C-207ENST00000527720 LRRC9Q6ZRR7 1453 aa22.86■■□□□ 1.25
USH1C-207ENST00000527720 AQRO60306 1485 aaKnown RBP eCLIP22.86■■□□□ 1.25
USH1C-207ENST00000527720 GAPVD1Q14C86 1478 aa22.86■■□□□ 1.25
USH1C-207ENST00000527720 FYCO1Q9BQS8 1478 aa22.84■■□□□ 1.25
USH1C-207ENST00000527720 TARBP1Q13395 1621 aaKnown RBP22.84■■□□□ 1.25
USH1C-207ENST00000527720 DIEXFQ68CQ4 756 aaKnown RBP22.8■■□□□ 1.24
USH1C-207ENST00000527720 CASKIN1Q8WXD9 1431 aa22.79■■□□□ 1.24
USH1C-207ENST00000527720 ZNF316A6NFI3 1004 aaPredicted RBP22.79■■□□□ 1.24
USH1C-207ENST00000527720 DNAJC5BQ9UF47 199 aa22.79■■□□□ 1.24
USH1C-207ENST00000527720 DHX57Q6P158 1386 aaKnown RBP22.78■■□□□ 1.24
USH1C-207ENST00000527720 TDRD9Q8NDG6 1382 aaKnown RBP22.78■■□□□ 1.24
USH1C-207ENST00000527720 FHOD3Q2V2M9 1422 aa22.78■■□□□ 1.24
USH1C-207ENST00000527720 SAMD9Q5K651 1589 aa22.78■■□□□ 1.24
USH1C-207ENST00000527720 FMN1Q68DA7 1419 aa22.76■■□□□ 1.23
USH1C-207ENST00000527720 PBRM1Q86U86 1689 aa22.74■■□□□ 1.23
USH1C-207ENST00000527720 MRC2Q9UBG0 1479 aa22.71■■□□□ 1.23
USH1C-207ENST00000527720 P3H3Q8IVL6 736 aa22.7■■□□□ 1.22
USH1C-207ENST00000527720 SNAPC4Q5SXM2 1469 aa22.68■■□□□ 1.22
USH1C-207ENST00000527720 PHLDB1Q86UU1 1377 aa22.67■■□□□ 1.22
USH1C-207ENST00000527720 THOC2Q8NI27 1593 aaKnown RBP22.66■■□□□ 1.22
USH1C-207ENST00000527720 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.63■■□□□ 1.21
USH1C-207ENST00000527720 ADAMTS12P58397 1594 aa22.61■■□□□ 1.21
USH1C-207ENST00000527720 LRRIQ1Q96JM4 1722 aa22.6■■□□□ 1.21
USH1C-207ENST00000527720 WDR62O43379 1518 aa22.58■■□□□ 1.2
USH1C-207ENST00000527720 GRIN2BQ13224 1484 aa22.58■■□□□ 1.2
USH1C-207ENST00000527720 SETD5Q9C0A6 1442 aa22.57■■□□□ 1.2
USH1C-207ENST00000527720 RAB3GAP2Q9H2M9 1393 aa22.57■■□□□ 1.2
USH1C-207ENST00000527720 ATP1B4Q9UN42 357 aaPredicted RBP22.57■■□□□ 1.2
USH1C-207ENST00000527720 IFT140Q96RY7 1462 aa22.55■■□□□ 1.2
USH1C-207ENST00000527720 ITGAEP38570 1179 aa22.54■■□□□ 1.2
USH1C-207ENST00000527720 IQGAP2Q13576 1575 aa22.54■■□□□ 1.2
USH1C-207ENST00000527720 SUPT6HQ7KZ85 1726 aaKnown RBP22.5■■□□□ 1.19
USH1C-207ENST00000527720 FAM50AQ14320 339 aaKnown RBP22.49■■□□□ 1.19
USH1C-207ENST00000527720 MTUS2Q5JR59 1369 aa22.49■■□□□ 1.19
USH1C-207ENST00000527720 EHBP1L1Q8N3D4 1523 aa22.49■■□□□ 1.19
USH1C-207ENST00000527720 CCDC18Q5T9S5 1454 aa22.48■■□□□ 1.19
USH1C-207ENST00000527720 FGD6Q6ZV73 1430 aa22.48■■□□□ 1.19
USH1C-207ENST00000527720 MAPKBP1O60336 1514 aa22.47■■□□□ 1.19
USH1C-207ENST00000527720 HECW1Q76N89 1606 aa22.46■■□□□ 1.19
USH1C-207ENST00000527720 UGGT2Q9NYU1 1516 aa22.43■■□□□ 1.18
USH1C-207ENST00000527720 NCOA2Q15596 1464 aa22.42■■□□□ 1.18
USH1C-207ENST00000527720 CENPBP07199 599 aaPredicted RBP22.41■■□□□ 1.18
USH1C-207ENST00000527720 ARHGEF11O15085 1522 aa22.4■■□□□ 1.18
USH1C-207ENST00000527720 ZNF608Q9ULD9 1512 aaPredicted RBP22.4■■□□□ 1.18
USH1C-207ENST00000527720 ACIN1Q9UKV3 1341 aaKnown RBP22.4■■□□□ 1.18
USH1C-207ENST00000527720 MYOM3Q5VTT5 1437 aa22.39■■□□□ 1.18
USH1C-207ENST00000527720 EIF4G3O43432 1585 aaKnown RBP22.38■■□□□ 1.17
USH1C-207ENST00000527720 SCAF1Q9H7N4 1312 aaKnown RBP22.36■■□□□ 1.17
USH1C-207ENST00000527720 KIAA0586Q9BVV6 1533 aa22.35■■□□□ 1.17
USH1C-207ENST00000527720 PTPN23Q9H3S7 1636 aa22.33■■□□□ 1.17
USH1C-207ENST00000527720 MAGI3Q5TCQ9 1506 aa22.33■■□□□ 1.16
USH1C-207ENST00000527720 EPRSP07814 1512 aaKnown RBP22.32■■□□□ 1.16
USH1C-207ENST00000527720 ERCC6Q03468 1493 aa22.31■■□□□ 1.16
USH1C-207ENST00000527720 HFM1A2PYH4 1435 aa22.3■■□□□ 1.16
USH1C-207ENST00000527720 KIAA0556O60303 1618 aa22.3■■□□□ 1.16
USH1C-207ENST00000527720 GRIN2AQ12879 1464 aa22.3■■□□□ 1.16
USH1C-207ENST00000527720 NEUROD1Q13562 356 aa22.29■■□□□ 1.16
USH1C-207ENST00000527720 TIMELESSQ9UNS1 1208 aa22.29■■□□□ 1.16
USH1C-207ENST00000527720 MIER1Q8N108 512 aa22.29■■□□□ 1.16
USH1C-207ENST00000527720 MAGI1Q96QZ7 1491 aaPredicted RBP22.28■■□□□ 1.16
USH1C-207ENST00000527720 TCOF1Q13428 1488 aaKnown RBP22.27■■□□□ 1.16
USH1C-207ENST00000527720 DISP1Q96F81 1524 aa22.25■■□□□ 1.15
USH1C-207ENST00000527720 PTPRKQ15262 1439 aa22.24■■□□□ 1.15
USH1C-207ENST00000527720 MIA2Q96PC5 1412 aa22.21■■□□□ 1.15
USH1C-207ENST00000527720 UACAQ9BZF9 1416 aa22.21■■□□□ 1.15
USH1C-207ENST00000527720 CDK13Q14004 1512 aaKnown RBP22.21■■□□□ 1.15
USH1C-207ENST00000527720 GCC2Q8IWJ2 1684 aa22.2■■□□□ 1.15
USH1C-207ENST00000527720 NAIPQ13075 1403 aa22.2■■□□□ 1.14
USH1C-207ENST00000527720 RAPGEF6Q8TEU7 1601 aa22.2■■□□□ 1.14
USH1C-207ENST00000527720 SYNJ2O15056 1496 aa22.19■■□□□ 1.14
USH1C-207ENST00000527720 AKNAQ7Z591 1439 aa22.17■■□□□ 1.14
USH1C-207ENST00000527720 CEP170Q5SW79 1584 aa22.15■■□□□ 1.14
USH1C-207ENST00000527720 SIN3AQ96ST3 1273 aa22.14■■□□□ 1.13
USH1C-207ENST00000527720 NUP153P49790 1475 aaKnown RBP22.12■■□□□ 1.13
USH1C-207ENST00000527720 NUP160Q12769 1436 aa22.08■■□□□ 1.13
USH1C-207ENST00000527720 CHMP7Q8WUX9 453 aaPredicted RBP22.08■■□□□ 1.12
USH1C-207ENST00000527720 PPP1R15AO75807 674 aaPredicted RBP22.05■■□□□ 1.12
USH1C-207ENST00000527720 CDK11AQ9UQ88 783 aaPredicted RBP22.05■■□□□ 1.12
USH1C-207ENST00000527720 YTHDC1Q96MU7 727 aaKnown RBP22.04■■□□□ 1.12
USH1C-207ENST00000527720 GTF3C3Q9Y5Q9 886 aa22.04■■□□□ 1.12
USH1C-207ENST00000527720 CARMIL2Q6F5E8 1435 aa22.03■■□□□ 1.12
USH1C-207ENST00000527720 DNMT1P26358 1616 aaKnown RBP22.03■■□□□ 1.12
USH1C-207ENST00000527720 ADCY10Q96PN6 1610 aa22.02■■□□□ 1.12
USH1C-207ENST00000527720 ITSN2Q9NZM3 1697 aa22.02■■□□□ 1.12
USH1C-207ENST00000527720 TONSLQ96HA7 1378 aa22.01■■□□□ 1.11
USH1C-207ENST00000527720 ROCK1Q13464 1354 aa22■■□□□ 1.11
USH1C-207ENST00000527720 TROQ12816 1431 aaPredicted RBP21.99■■□□□ 1.11
USH1C-207ENST00000527720 DAPK1P53355 1430 aa21.97■■□□□ 1.11
USH1C-207ENST00000527720 RRP7BPQ9NSQ0 103 aa21.96■■□□□ 1.11
USH1C-207ENST00000527720 KDM6BO15054 1643 aa21.95■■□□□ 1.1
USH1C-207ENST00000527720 ARID3CA6NKF2 412 aa21.95■■□□□ 1.1
USH1C-207ENST00000527720 PLB1Q6P1J6 1458 aa21.94■■□□□ 1.1
USH1C-207ENST00000527720 JPH4Q96JJ6 628 aa21.94■■□□□ 1.1
USH1C-207ENST00000527720 CHIC2Q9UKJ5 165 aa21.94■■□□□ 1.1
USH1C-207ENST00000527720 ABCC5O15440 1437 aa21.91■■□□□ 1.1
USH1C-207ENST00000527720 ABCA8O94911 1581 aa21.91■■□□□ 1.1
USH1C-207ENST00000527720 FBLN2P98095 1184 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms