RNA–Protein interactions for RNA: ENST00000527020.5

USH1C-205, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,159 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-205ENST00000527020 CFAP43Q8NDM7 1665 aa26.17■■□□□ 1.78
USH1C-205ENST00000527020 ABCA5Q8WWZ7 1642 aa26.16■■□□□ 1.78
USH1C-205ENST00000527020 FHAD1B1AJZ9 1412 aa26.15■■□□□ 1.78
USH1C-205ENST00000527020 KIF21AQ7Z4S6 1674 aa26.15■■□□□ 1.78
USH1C-205ENST00000527020 LRRC9Q6ZRR7 1453 aa26.14■■□□□ 1.78
USH1C-205ENST00000527020 EFCAB5A4FU69 1503 aa26.13■■□□□ 1.77
USH1C-205ENST00000527020 PDS5BQ9NTI5 1447 aa26.12■■□□□ 1.77
USH1C-205ENST00000527020 CLSPNQ9HAW4 1339 aa26.12■■□□□ 1.77
USH1C-205ENST00000527020 FHOD3Q2V2M9 1422 aa26.08■■□□□ 1.77
USH1C-205ENST00000527020 P3H3Q8IVL6 736 aa26.07■■□□□ 1.76
USH1C-205ENST00000527020 TDRD9Q8NDG6 1382 aaKnown RBP26.04■■□□□ 1.76
USH1C-205ENST00000527020 FYCO1Q9BQS8 1478 aa26.04■■□□□ 1.76
USH1C-205ENST00000527020 GAPVD1Q14C86 1478 aa26.03■■□□□ 1.76
USH1C-205ENST00000527020 PHLDB1Q86UU1 1377 aa26.02■■□□□ 1.76
USH1C-205ENST00000527020 SCAF1Q9H7N4 1312 aaKnown RBP26.02■■□□□ 1.76
USH1C-205ENST00000527020 AQRO60306 1485 aaKnown RBP eCLIP26.02■■□□□ 1.76
USH1C-205ENST00000527020 TARBP1Q13395 1621 aaKnown RBP26■■□□□ 1.75
USH1C-205ENST00000527020 CASKIN1Q8WXD9 1431 aa26■■□□□ 1.75
USH1C-205ENST00000527020 SAMD9Q5K651 1589 aa25.96■■□□□ 1.75
USH1C-205ENST00000527020 ITGAEP38570 1179 aa25.95■■□□□ 1.74
USH1C-205ENST00000527020 SNAPC4Q5SXM2 1469 aa25.93■■□□□ 1.74
USH1C-205ENST00000527020 RAB3GAP2Q9H2M9 1393 aa25.91■■□□□ 1.74
USH1C-205ENST00000527020 FMN1Q68DA7 1419 aa25.89■■□□□ 1.74
USH1C-205ENST00000527020 ACIN1Q9UKV3 1341 aaKnown RBP25.89■■□□□ 1.74
USH1C-205ENST00000527020 LRRIQ1Q96JM4 1722 aa25.88■■□□□ 1.73
USH1C-205ENST00000527020 NEUROD1Q13562 356 aa25.88■■□□□ 1.73
USH1C-205ENST00000527020 ATP1B4Q9UN42 357 aaPredicted RBP25.88■■□□□ 1.73
USH1C-205ENST00000527020 PBRM1Q86U86 1689 aa25.87■■□□□ 1.73
USH1C-205ENST00000527020 MAPKBP1O60336 1514 aa25.83■■□□□ 1.73
USH1C-205ENST00000527020 SETD5Q9C0A6 1442 aa25.83■■□□□ 1.73
USH1C-205ENST00000527020 FAM50AQ14320 339 aaKnown RBP25.79■■□□□ 1.72
USH1C-205ENST00000527020 GRIN2BQ13224 1484 aa25.78■■□□□ 1.72
USH1C-205ENST00000527020 MIER1Q8N108 512 aa25.78■■□□□ 1.72
USH1C-205ENST00000527020 MRC2Q9UBG0 1479 aa25.78■■□□□ 1.72
USH1C-205ENST00000527020 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.77■■□□□ 1.72
USH1C-205ENST00000527020 CENPBP07199 599 aaPredicted RBP25.75■■□□□ 1.71
USH1C-205ENST00000527020 ADAMTS12P58397 1594 aa25.74■■□□□ 1.71
USH1C-205ENST00000527020 THOC2Q8NI27 1593 aaKnown RBP25.74■■□□□ 1.71
USH1C-205ENST00000527020 FGD6Q6ZV73 1430 aa25.71■■□□□ 1.71
USH1C-205ENST00000527020 MTUS2Q5JR59 1369 aa25.67■■□□□ 1.7
USH1C-205ENST00000527020 IQGAP2Q13576 1575 aa25.66■■□□□ 1.7
USH1C-205ENST00000527020 SUPT6HQ7KZ85 1726 aaKnown RBP25.63■■□□□ 1.69
USH1C-205ENST00000527020 NCOA2Q15596 1464 aa25.62■■□□□ 1.69
USH1C-205ENST00000527020 WDR62O43379 1518 aa25.62■■□□□ 1.69
USH1C-205ENST00000527020 EHBP1L1Q8N3D4 1523 aa25.62■■□□□ 1.69
USH1C-205ENST00000527020 MAGI3Q5TCQ9 1506 aa25.6■■□□□ 1.69
USH1C-205ENST00000527020 ZNF608Q9ULD9 1512 aaPredicted RBP25.59■■□□□ 1.69
USH1C-205ENST00000527020 IFT140Q96RY7 1462 aa25.58■■□□□ 1.69
USH1C-205ENST00000527020 ARHGEF11O15085 1522 aa25.58■■□□□ 1.69
USH1C-205ENST00000527020 MYOM3Q5VTT5 1437 aa25.57■■□□□ 1.68
USH1C-205ENST00000527020 PTPRKQ15262 1439 aa25.57■■□□□ 1.68
USH1C-205ENST00000527020 HECW1Q76N89 1606 aa25.56■■□□□ 1.68
USH1C-205ENST00000527020 UGGT2Q9NYU1 1516 aa25.56■■□□□ 1.68
USH1C-205ENST00000527020 CCDC18Q5T9S5 1454 aa25.55■■□□□ 1.68
USH1C-205ENST00000527020 YTHDC1Q96MU7 727 aaKnown RBP25.54■■□□□ 1.68
USH1C-205ENST00000527020 GTF3C3Q9Y5Q9 886 aa25.53■■□□□ 1.68
USH1C-205ENST00000527020 SIN3AQ96ST3 1273 aa25.51■■□□□ 1.67
USH1C-205ENST00000527020 PTPN23Q9H3S7 1636 aa25.51■■□□□ 1.67
USH1C-205ENST00000527020 HFM1A2PYH4 1435 aa25.5■■□□□ 1.67
USH1C-205ENST00000527020 EPRSP07814 1512 aaKnown RBP25.48■■□□□ 1.67
USH1C-205ENST00000527020 EIF4G3O43432 1585 aaKnown RBP25.46■■□□□ 1.67
USH1C-205ENST00000527020 CDK13Q14004 1512 aaKnown RBP25.44■■□□□ 1.66
USH1C-205ENST00000527020 NAIPQ13075 1403 aa25.43■■□□□ 1.66
USH1C-205ENST00000527020 TCOF1Q13428 1488 aaKnown RBP25.42■■□□□ 1.66
USH1C-205ENST00000527020 KIAA0586Q9BVV6 1533 aa25.41■■□□□ 1.66
USH1C-205ENST00000527020 KIAA0556O60303 1618 aa25.4■■□□□ 1.66
USH1C-205ENST00000527020 DISP1Q96F81 1524 aa25.4■■□□□ 1.66
USH1C-205ENST00000527020 TIMELESSQ9UNS1 1208 aa25.39■■□□□ 1.66
USH1C-205ENST00000527020 UACAQ9BZF9 1416 aa25.39■■□□□ 1.66
USH1C-205ENST00000527020 GRIN2AQ12879 1464 aa25.38■■□□□ 1.65
USH1C-205ENST00000527020 GCC2Q8IWJ2 1684 aa25.34■■□□□ 1.65
USH1C-205ENST00000527020 ERCC6Q03468 1493 aa25.32■■□□□ 1.64
USH1C-205ENST00000527020 PPP1R15AO75807 674 aaPredicted RBP25.29■■□□□ 1.64
USH1C-205ENST00000527020 MIA2Q96PC5 1412 aa25.29■■□□□ 1.64
USH1C-205ENST00000527020 MAGI1Q96QZ7 1491 aaPredicted RBP25.28■■□□□ 1.64
USH1C-205ENST00000527020 RAPGEF6Q8TEU7 1601 aa25.28■■□□□ 1.64
USH1C-205ENST00000527020 NUP153P49790 1475 aaKnown RBP25.28■■□□□ 1.64
USH1C-205ENST00000527020 ARID3CA6NKF2 412 aa25.26■■□□□ 1.63
USH1C-205ENST00000527020 CEP170Q5SW79 1584 aa25.26■■□□□ 1.63
USH1C-205ENST00000527020 AKNAQ7Z591 1439 aa25.25■■□□□ 1.63
USH1C-205ENST00000527020 KDM6BO15054 1643 aa25.24■■□□□ 1.63
USH1C-205ENST00000527020 SYNJ2O15056 1496 aa25.21■■□□□ 1.63
USH1C-205ENST00000527020 RRP7BPQ9NSQ0 103 aa25.21■■□□□ 1.63
USH1C-205ENST00000527020 DENND4BO75064 1496 aaPredicted RBP25.2■■□□□ 1.62
USH1C-205ENST00000527020 CHIC2Q9UKJ5 165 aa25.2■■□□□ 1.62
USH1C-205ENST00000527020 TONSLQ96HA7 1378 aa25.19■■□□□ 1.62
USH1C-205ENST00000527020 KDM5BQ9UGL1 1544 aa25.18■■□□□ 1.62
USH1C-205ENST00000527020 DNMT1P26358 1616 aaKnown RBP25.14■■□□□ 1.61
USH1C-205ENST00000527020 CHMP7Q8WUX9 453 aaPredicted RBP25.12■■□□□ 1.61
USH1C-205ENST00000527020 NUP160Q12769 1436 aa25.12■■□□□ 1.61
USH1C-205ENST00000527020 DAPK1P53355 1430 aa25.11■■□□□ 1.61
USH1C-205ENST00000527020 DDX10Q13206 875 aaKnown RBP25.1■■□□□ 1.61
USH1C-205ENST00000527020 PLB1Q6P1J6 1458 aa25.09■■□□□ 1.61
USH1C-205ENST00000527020 HIRIP3Q9BW71 556 aaPredicted RBP25.08■■□□□ 1.61
USH1C-205ENST00000527020 ABCC5O15440 1437 aa25.08■■□□□ 1.6
USH1C-205ENST00000527020 ROCK1Q13464 1354 aa25.06■■□□□ 1.6
USH1C-205ENST00000527020 TROQ12816 1431 aaPredicted RBP25.06■■□□□ 1.6
USH1C-205ENST00000527020 PRG4Q92954 1404 aaPredicted RBP25.06■■□□□ 1.6
USH1C-205ENST00000527020 PELP1Q8IZL8 1130 aaKnown RBP25.05■■□□□ 1.6
USH1C-205ENST00000527020 ADCY10Q96PN6 1610 aa25.05■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms