RNA–Protein interactions for RNA: ENST00000526869.1

SMCO4-203, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

TSL 1 (best)

Gene SMCO4, Length 374 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-203ENST00000526869 ARAP1Q96P48 1450 aa32.34■■■□□ 2.77
SMCO4-203ENST00000526869 GRIN2AQ12879 1464 aa32.33■■■□□ 2.77
SMCO4-203ENST00000526869 EFCAB5A4FU69 1503 aa32.32■■■□□ 2.76
SMCO4-203ENST00000526869 RANGAP1P46060 587 aaPredicted RBP32.23■■■□□ 2.75
SMCO4-203ENST00000526869 IQGAP2Q13576 1575 aa32.22■■■□□ 2.75
SMCO4-203ENST00000526869 SAMD9Q5K651 1589 aa32.19■■■□□ 2.74
SMCO4-203ENST00000526869 KIAA0586Q9BVV6 1533 aa32.18■■■□□ 2.74
SMCO4-203ENST00000526869 CHMP7Q8WUX9 453 aaPredicted RBP32.16■■■□□ 2.74
SMCO4-203ENST00000526869 NUP160Q12769 1436 aa32.13■■■□□ 2.73
SMCO4-203ENST00000526869 CEP170Q5SW79 1584 aa32.11■■■□□ 2.73
SMCO4-203ENST00000526869 UGGT2Q9NYU1 1516 aa32.1■■■□□ 2.73
SMCO4-203ENST00000526869 FHOD3Q2V2M9 1422 aa32■■■□□ 2.71
SMCO4-203ENST00000526869 CHD1O14646 1710 aa32■■■□□ 2.71
SMCO4-203ENST00000526869 FBLN2P98095 1184 aa31.98■■■□□ 2.71
SMCO4-203ENST00000526869 FMN1Q68DA7 1419 aa31.98■■■□□ 2.71
SMCO4-203ENST00000526869 TRIM26Q12899 539 aaPredicted RBP31.94■■■□□ 2.7
SMCO4-203ENST00000526869 DNAJC5Q9H3Z4 198 aa31.93■■■□□ 2.7
SMCO4-203ENST00000526869 MAP3K1Q13233 1512 aa31.92■■■□□ 2.7
SMCO4-203ENST00000526869 APLP2Q06481 763 aa31.92■■■□□ 2.7
SMCO4-203ENST00000526869 FYCO1Q9BQS8 1478 aa31.91■■■□□ 2.7
SMCO4-203ENST00000526869 PCF11O94913 1555 aaKnown RBP31.9■■■□□ 2.7
SMCO4-203ENST00000526869 CASKIN1Q8WXD9 1431 aa31.9■■■□□ 2.7
SMCO4-203ENST00000526869 KIAA0556O60303 1618 aa31.89■■■□□ 2.7
SMCO4-203ENST00000526869 P3H3Q8IVL6 736 aa31.89■■■□□ 2.7
SMCO4-203ENST00000526869 DISP1Q96F81 1524 aa31.87■■■□□ 2.69
SMCO4-203ENST00000526869 TIAM1Q13009 1591 aa31.79■■■□□ 2.68
SMCO4-203ENST00000526869 CFAP43Q8NDM7 1665 aa31.79■■■□□ 2.68
SMCO4-203ENST00000526869 PPARGC1BQ86YN6 1023 aaKnown RBP31.78■■■□□ 2.68
SMCO4-203ENST00000526869 CARMIL2Q6F5E8 1435 aa31.77■■■□□ 2.68
SMCO4-203ENST00000526869 JPH4Q96JJ6 628 aa31.76■■■□□ 2.67
SMCO4-203ENST00000526869 PCGF6Q9BYE7 350 aa31.74■■■□□ 2.67
SMCO4-203ENST00000526869 SHROOM2Q13796 1616 aa31.74■■■□□ 2.67
SMCO4-203ENST00000526869 CLASP1Q7Z460 1538 aa31.71■■■□□ 2.67
SMCO4-203ENST00000526869 HECW1Q76N89 1606 aa31.67■■■□□ 2.66
SMCO4-203ENST00000526869 CCDC18Q5T9S5 1454 aa31.62■■■□□ 2.65
SMCO4-203ENST00000526869 LRRC9Q6ZRR7 1453 aa31.62■■■□□ 2.65
SMCO4-203ENST00000526869 PRG4Q92954 1404 aaPredicted RBP31.59■■■□□ 2.65
SMCO4-203ENST00000526869 KANK4Q5T7N3 995 aaPredicted RBP31.59■■■□□ 2.65
SMCO4-203ENST00000526869 LRRIQ1Q96JM4 1722 aa31.58■■■□□ 2.65
SMCO4-203ENST00000526869 RAPGEF6Q8TEU7 1601 aa31.57■■■□□ 2.64
SMCO4-203ENST00000526869 TTBK1Q5TCY1 1321 aaPredicted RBP31.54■■■□□ 2.64
SMCO4-203ENST00000526869 ATP1B4Q9UN42 357 aaPredicted RBP31.53■■■□□ 2.64
SMCO4-203ENST00000526869 EPRSP07814 1512 aaKnown RBP31.5■■■□□ 2.63
SMCO4-203ENST00000526869 ABCA8O94911 1581 aa31.46■■■□□ 2.63
SMCO4-203ENST00000526869 NUP153P49790 1475 aaKnown RBP31.46■■■□□ 2.63
SMCO4-203ENST00000526869 EHBP1L1Q8N3D4 1523 aa31.44■■■□□ 2.62
SMCO4-203ENST00000526869 PTPRGP23470 1445 aa31.41■■■□□ 2.62
SMCO4-203ENST00000526869 PLB1Q6P1J6 1458 aa31.4■■■□□ 2.62
SMCO4-203ENST00000526869 MTUS2Q5JR59 1369 aa31.38■■■□□ 2.61
SMCO4-203ENST00000526869 RRBP1Q9P2E9 1410 aaKnown RBP31.38■■■□□ 2.61
SMCO4-203ENST00000526869 ERCC6L2Q5T890 1561 aa31.36■■■□□ 2.61
SMCO4-203ENST00000526869 CDK13Q14004 1512 aaKnown RBP31.36■■■□□ 2.61
SMCO4-203ENST00000526869 OSCARQ8IYS5 282 aa31.33■■■□□ 2.61
SMCO4-203ENST00000526869 SUPT6HQ7KZ85 1726 aaKnown RBP31.32■■■□□ 2.6
SMCO4-203ENST00000526869 MAGI3Q5TCQ9 1506 aa31.31■■■□□ 2.6
SMCO4-203ENST00000526869 ARHGEF11O15085 1522 aa31.27■■■□□ 2.6
SMCO4-203ENST00000526869 UACAQ9BZF9 1416 aa31.25■■■□□ 2.59
SMCO4-203ENST00000526869 PHLDB1Q86UU1 1377 aa31.25■■■□□ 2.59
SMCO4-203ENST00000526869 NCOA2Q15596 1464 aa31.23■■■□□ 2.59
SMCO4-203ENST00000526869 CCNB3Q8WWL7 1395 aa31.23■■■□□ 2.59
SMCO4-203ENST00000526869 CDK11AQ9UQ88 783 aaPredicted RBP31.23■■■□□ 2.59
SMCO4-203ENST00000526869 ABCC2Q92887 1545 aa31.2■■■□□ 2.59
SMCO4-203ENST00000526869 UHRF1BP1LA0JNW5 1464 aa31.19■■■□□ 2.58
SMCO4-203ENST00000526869 ATP10BO94823 1461 aa31.18■■■□□ 2.58
SMCO4-203ENST00000526869 TROQ12816 1431 aaPredicted RBP31.16■■■□□ 2.58
SMCO4-203ENST00000526869 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.15■■■□□ 2.582e-7■■■■■ 27.5
SMCO4-203ENST00000526869 ADCY10Q96PN6 1610 aa31.14■■■□□ 2.58
SMCO4-203ENST00000526869 MYOM3Q5VTT5 1437 aa31.13■■■□□ 2.57
SMCO4-203ENST00000526869 FGD6Q6ZV73 1430 aa31.11■■■□□ 2.57
SMCO4-203ENST00000526869 ARID3CA6NKF2 412 aa31.1■■■□□ 2.57
SMCO4-203ENST00000526869 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.07■■■□□ 2.56
SMCO4-203ENST00000526869 HNRNPUL2Q1KMD3 747 aaKnown RBP31.07■■■□□ 2.56
SMCO4-203ENST00000526869 MIA2Q96PC5 1412 aa31.02■■■□□ 2.56
SMCO4-203ENST00000526869 KDM5BQ9UGL1 1544 aa31.01■■■□□ 2.55
SMCO4-203ENST00000526869 KIF14Q15058 1648 aa31■■■□□ 2.55
SMCO4-203ENST00000526869 PLEKHD1A6NEE1 506 aa31■■■□□ 2.55
SMCO4-203ENST00000526869 TCOF1Q13428 1488 aaKnown RBP30.98■■■□□ 2.55
SMCO4-203ENST00000526869 ZCCHC11Q5TAX3 1644 aaKnown RBP30.96■■■□□ 2.55
SMCO4-203ENST00000526869 PTPN23Q9H3S7 1636 aa30.96■■■□□ 2.55
SMCO4-203ENST00000526869 ITSN2Q9NZM3 1697 aa30.95■■■□□ 2.55
SMCO4-203ENST00000526869 ABCC10Q5T3U5 1492 aa30.9■■■□□ 2.54
SMCO4-203ENST00000526869 FAM50AQ14320 339 aaKnown RBP30.9■■■□□ 2.54
SMCO4-203ENST00000526869 GPATCH8Q9UKJ3 1502 aaKnown RBP30.85■■■□□ 2.53
SMCO4-203ENST00000526869 HRCP23327 699 aa30.84■■■□□ 2.53
SMCO4-203ENST00000526869 CDC42BPAQ5VT25 1732 aa30.8■■■□□ 2.52
SMCO4-203ENST00000526869 PREX2Q70Z35 1606 aa30.73■■■□□ 2.51
SMCO4-203ENST00000526869 ITGAEP38570 1179 aa30.73■■■□□ 2.51
SMCO4-203ENST00000526869 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.72■■■□□ 2.51
SMCO4-203ENST00000526869 CFDP1Q9UEE9 299 aaPredicted RBP30.71■■■□□ 2.51
SMCO4-203ENST00000526869 RIMBP3CA6NJZ7 1639 aa30.71■■■□□ 2.51
SMCO4-203ENST00000526869 RIMBP3BA6NNM3 1639 aa30.71■■■□□ 2.51
SMCO4-203ENST00000526869 RIMBP3Q9UFD9 1639 aa30.71■■■□□ 2.51
SMCO4-203ENST00000526869 CAMSAP2Q08AD1 1489 aa30.7■■■□□ 2.51
SMCO4-203ENST00000526869 WDR7Q9Y4E6 1490 aa30.7■■■□□ 2.51
SMCO4-203ENST00000526869 TTC37Q6PGP7 1564 aa30.7■■■□□ 2.5
SMCO4-203ENST00000526869 DNMT1P26358 1616 aaKnown RBP30.69■■■□□ 2.5
SMCO4-203ENST00000526869 SETD5Q9C0A6 1442 aa30.67■■■□□ 2.5
SMCO4-203ENST00000526869 ZEB1P37275 1124 aaPredicted RBP30.67■■■□□ 2.5
SMCO4-203ENST00000526869 PTPRKQ15262 1439 aa30.66■■■□□ 2.5
SMCO4-203ENST00000526869 AKNAQ7Z591 1439 aa30.65■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms