RNA–Protein interactions for RNA: ENST00000524955.1

CHMP4A-202, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 268 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-202ENST00000524955 ERCC6L2Q5T890 1561 aa7.59□□□□□ -1.19
CHMP4A-202ENST00000524955 CYB5RLQ6IPT4 315 aa7.59□□□□□ -1.19
CHMP4A-202ENST00000524955 JPH4Q96JJ6 628 aa7.59□□□□□ -1.19
CHMP4A-202ENST00000524955 EEA1Q15075 1411 aa7.59□□□□□ -1.19
CHMP4A-202ENST00000524955 ARHGEF11O15085 1522 aa7.58□□□□□ -1.2
CHMP4A-202ENST00000524955 UBTFP17480 764 aaKnown RBP7.58□□□□□ -1.2
CHMP4A-202ENST00000524955 P3H3Q8IVL6 736 aa7.58□□□□□ -1.2
CHMP4A-202ENST00000524955 PRG4Q92954 1404 aaPredicted RBP7.58□□□□□ -1.2
CHMP4A-202ENST00000524955 RIMBP3CA6NJZ7 1639 aa7.57□□□□□ -1.2
CHMP4A-202ENST00000524955 RIMBP3BA6NNM3 1639 aa7.57□□□□□ -1.2
CHMP4A-202ENST00000524955 RIMBP3Q9UFD9 1639 aa7.57□□□□□ -1.2
CHMP4A-202ENST00000524955 LOC105371045A0A1W2PR82 267 aa7.57□□□□□ -1.2
CHMP4A-202ENST00000524955 KIAA0586Q9BVV6 1533 aa7.57□□□□□ -1.2
CHMP4A-202ENST00000524955 ARAP1Q96P48 1450 aa7.55□□□□□ -1.2
CHMP4A-202ENST00000524955 IQGAP2Q13576 1575 aa7.53□□□□□ -1.2
CHMP4A-202ENST00000524955 GOLGA3Q08378 1498 aa7.52□□□□□ -1.21
CHMP4A-202ENST00000524955 KIF21BO75037 1637 aa7.52□□□□□ -1.21
CHMP4A-202ENST00000524955 SHROOM2Q13796 1616 aa7.52□□□□□ -1.21
CHMP4A-202ENST00000524955 ARID3CA6NKF2 412 aa7.5□□□□□ -1.21
CHMP4A-202ENST00000524955 DISP1Q96F81 1524 aa7.5□□□□□ -1.21
CHMP4A-202ENST00000524955 CTTNBP2Q8WZ74 1663 aa7.49□□□□□ -1.21
CHMP4A-202ENST00000524955 CARMIL2Q6F5E8 1435 aa7.49□□□□□ -1.21
CHMP4A-202ENST00000524955 UGGT2Q9NYU1 1516 aa7.48□□□□□ -1.21
CHMP4A-202ENST00000524955 PTPRGP23470 1445 aa7.48□□□□□ -1.21
CHMP4A-202ENST00000524955 TNIKQ9UKE5 1360 aa7.47□□□□□ -1.21
CHMP4A-202ENST00000524955 FHOD3Q2V2M9 1422 aa7.47□□□□□ -1.21
CHMP4A-202ENST00000524955 KIAA0556O60303 1618 aa7.46□□□□□ -1.21
CHMP4A-202ENST00000524955 ATP1B4Q9UN42 357 aaPredicted RBP7.45□□□□□ -1.22
CHMP4A-202ENST00000524955 PLB1Q6P1J6 1458 aa7.44□□□□□ -1.22
CHMP4A-202ENST00000524955 ARHGAP35Q9NRY4 1499 aa7.43□□□□□ -1.22
CHMP4A-202ENST00000524955 TRHP20396 242 aaPredicted RBP7.43□□□□□ -1.22
CHMP4A-202ENST00000524955 CLIP1P30622 1438 aa7.42□□□□□ -1.22
CHMP4A-202ENST00000524955 UACAQ9BZF9 1416 aa7.42□□□□□ -1.22
CHMP4A-202ENST00000524955 SAMD9Q5K651 1589 aa7.42□□□□□ -1.22
CHMP4A-202ENST00000524955 ADCY10Q96PN6 1610 aa7.41□□□□□ -1.22
CHMP4A-202ENST00000524955 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.41□□□□□ -1.22
CHMP4A-202ENST00000524955 NPM1P06748 294 aaKnown RBP eCLIP7.41□□□□□ -1.22
CHMP4A-202ENST00000524955 HNRNPUL2Q1KMD3 747 aaKnown RBP7.41□□□□□ -1.22
CHMP4A-202ENST00000524955 CEP162Q5TB80 1403 aa7.41□□□□□ -1.22
CHMP4A-202ENST00000524955 EFCAB5A4FU69 1503 aa7.38□□□□□ -1.23
CHMP4A-202ENST00000524955 ABCA8O94911 1581 aa7.37□□□□□ -1.23
CHMP4A-202ENST00000524955 ABCC2Q92887 1545 aa7.37□□□□□ -1.23
CHMP4A-202ENST00000524955 KCNH8Q96L42 1107 aa7.37□□□□□ -1.23
CHMP4A-202ENST00000524955 UHRF1BP1LA0JNW5 1464 aa7.36□□□□□ -1.23
CHMP4A-202ENST00000524955 ATP10BO94823 1461 aa7.36□□□□□ -1.23
CHMP4A-202ENST00000524955 NUP153P49790 1475 aaKnown RBP7.36□□□□□ -1.23
CHMP4A-202ENST00000524955 RAPGEF6Q8TEU7 1601 aa7.35□□□□□ -1.23
CHMP4A-202ENST00000524955 FAM69CQ0P6D2 419 aa7.35□□□□□ -1.23
CHMP4A-202ENST00000524955 CDK13Q14004 1512 aaKnown RBP7.35□□□□□ -1.23
CHMP4A-202ENST00000524955 ASXL2Q76L83 1435 aa7.35□□□□□ -1.23
CHMP4A-202ENST00000524955 KDM5BQ9UGL1 1544 aa7.34□□□□□ -1.23
CHMP4A-202ENST00000524955 FMN1Q68DA7 1419 aa7.34□□□□□ -1.23
CHMP4A-202ENST00000524955 ZCCHC11Q5TAX3 1644 aaKnown RBP7.34□□□□□ -1.24
CHMP4A-202ENST00000524955 PCF11O94913 1555 aaKnown RBP7.33□□□□□ -1.24
CHMP4A-202ENST00000524955 MAPKBP1O60336 1514 aa7.31□□□□□ -1.24
CHMP4A-202ENST00000524955 EPRSP07814 1512 aaKnown RBP7.31□□□□□ -1.24
CHMP4A-202ENST00000524955 CASKIN1Q8WXD9 1431 aa7.3□□□□□ -1.24
CHMP4A-202ENST00000524955 PLEKHD1A6NEE1 506 aa7.3□□□□□ -1.24
CHMP4A-202ENST00000524955 PPARGC1BQ86YN6 1023 aaKnown RBP7.3□□□□□ -1.24
CHMP4A-202ENST00000524955 ABCC10Q5T3U5 1492 aa7.3□□□□□ -1.24
CHMP4A-202ENST00000524955 WDR7Q9Y4E6 1490 aa7.3□□□□□ -1.24
CHMP4A-202ENST00000524955 HECW1Q76N89 1606 aa7.29□□□□□ -1.24
CHMP4A-202ENST00000524955 DIP2BQ9P265 1576 aa7.29□□□□□ -1.24
CHMP4A-202ENST00000524955 VPS8Q8N3P4 1428 aa7.28□□□□□ -1.24
CHMP4A-202ENST00000524955 FYCO1Q9BQS8 1478 aa7.28□□□□□ -1.24
CHMP4A-202ENST00000524955 MAGI3Q5TCQ9 1506 aa7.27□□□□□ -1.25
CHMP4A-202ENST00000524955 LRRIQ1Q96JM4 1722 aa7.27□□□□□ -1.25
CHMP4A-202ENST00000524955 KANK4Q5T7N3 995 aaPredicted RBP7.27□□□□□ -1.25
CHMP4A-202ENST00000524955 CDK11AQ9UQ88 783 aaPredicted RBP7.25□□□□□ -1.25
CHMP4A-202ENST00000524955 CD109Q6YHK3 1445 aa7.25□□□□□ -1.25
CHMP4A-202ENST00000524955 KIF13AQ9H1H9 1805 aa7.24□□□□□ -1.25
CHMP4A-202ENST00000524955 CCDC18Q5T9S5 1454 aa7.24□□□□□ -1.25
CHMP4A-202ENST00000524955 MTUS2Q5JR59 1369 aa7.24□□□□□ -1.25
CHMP4A-202ENST00000524955 TROQ12816 1431 aaPredicted RBP7.24□□□□□ -1.25
CHMP4A-202ENST00000524955 TSPOAP1O95153 1857 aa7.24□□□□□ -1.25
CHMP4A-202ENST00000524955 KIF14Q15058 1648 aa7.23□□□□□ -1.25
CHMP4A-202ENST00000524955 APLP2Q06481 763 aa7.23□□□□□ -1.25
CHMP4A-202ENST00000524955 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.22□□□□□ -1.25
CHMP4A-202ENST00000524955 GLI2P10070 1586 aa7.22□□□□□ -1.25
CHMP4A-202ENST00000524955 TTC37Q6PGP7 1564 aa7.22□□□□□ -1.25
CHMP4A-202ENST00000524955 ZNF777Q9ULD5 760 aaPredicted RBP7.22□□□□□ -1.25
CHMP4A-202ENST00000524955 MAP3K4Q9Y6R4 1608 aa7.21□□□□□ -1.26
CHMP4A-202ENST00000524955 TIAM1Q13009 1591 aa7.2□□□□□ -1.26
CHMP4A-202ENST00000524955 COL17A1Q9UMD9 1497 aaPredicted RBP7.2□□□□□ -1.26
CHMP4A-202ENST00000524955 RAPGEF3O95398 923 aa7.2□□□□□ -1.26
CHMP4A-202ENST00000524955 ABCA9Q8IUA7 1624 aa7.19□□□□□ -1.26
CHMP4A-202ENST00000524955 PPRC1Q5VV67 1664 aaKnown RBP7.19□□□□□ -1.26
CHMP4A-202ENST00000524955 LRRC9Q6ZRR7 1453 aa7.19□□□□□ -1.26
CHMP4A-202ENST00000524955 ZNF644Q9H582 1327 aaPredicted RBP7.19□□□□□ -1.26
CHMP4A-202ENST00000524955 CCNB3Q8WWL7 1395 aa7.19□□□□□ -1.26
CHMP4A-202ENST00000524955 CFAP43Q8NDM7 1665 aa7.19□□□□□ -1.26
CHMP4A-202ENST00000524955 PLCH2O75038 1416 aa7.18□□□□□ -1.26
CHMP4A-202ENST00000524955 FANCAO15360 1455 aa7.17□□□□□ -1.26
CHMP4A-202ENST00000524955 NCOA2Q15596 1464 aa7.17□□□□□ -1.26
CHMP4A-202ENST00000524955 ARHGAP5Q13017 1502 aa7.17□□□□□ -1.26
CHMP4A-202ENST00000524955 EHBP1L1Q8N3D4 1523 aa7.17□□□□□ -1.26
CHMP4A-202ENST00000524955 HNRNPMP52272 730 aaKnown RBP eCLIP7.17□□□□□ -1.26
CHMP4A-202ENST00000524955 EFCAB2Q5VUJ9 269 aa7.17□□□□□ -1.26
CHMP4A-202ENST00000524955 CFDP1Q9UEE9 299 aaPredicted RBP7.17□□□□□ -1.26
CHMP4A-202ENST00000524955 TEX14Q8IWB6 1497 aa7.17□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms