RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 RUSC2Q8N2Y8 1516 aa35.52■■■■□ 3.28
VPS28-203ENST00000524521 PRG4Q92954 1404 aaPredicted RBP35.52■■■■□ 3.28
VPS28-203ENST00000524521 KIAA0586Q9BVV6 1533 aa35.47■■■■□ 3.27
VPS28-203ENST00000524521 TRHP20396 242 aaPredicted RBP35.42■■■■□ 3.26
VPS28-203ENST00000524521 RAPGEF2Q9Y4G8 1499 aa35.35■■■■□ 3.25
VPS28-203ENST00000524521 IQGAP2Q13576 1575 aa35.2■■■■□ 3.23
VPS28-203ENST00000524521 CARMIL2Q6F5E8 1435 aa35.14■■■■□ 3.22
VPS28-203ENST00000524521 TTBK1Q5TCY1 1321 aaPredicted RBP35.11■■■■□ 3.21
VPS28-203ENST00000524521 PRXQ9BXM0 1461 aa35.11■■■■□ 3.21
VPS28-203ENST00000524521 CSRNP3Q8WYN3 585 aa35.1■■■■□ 3.21
VPS28-203ENST00000524521 PTPRGP23470 1445 aa35.06■■■■□ 3.2
VPS28-203ENST00000524521 NPM1P06748 294 aaKnown RBP eCLIP35.05■■■■□ 3.2
VPS28-203ENST00000524521 TNIKQ9UKE5 1360 aa35.04■■■■□ 3.2
VPS28-203ENST00000524521 CHIC1Q5VXU3 224 aa35.03■■■■□ 3.2
VPS28-203ENST00000524521 FAM9AQ8IZU1 332 aaPredicted RBP34.99■■■■□ 3.19
VPS28-203ENST00000524521 DISP1Q96F81 1524 aa34.99■■■■□ 3.19
VPS28-203ENST00000524521 UGGT2Q9NYU1 1516 aa34.99■■■■□ 3.19
VPS28-203ENST00000524521 EEA1Q15075 1411 aa34.98■■■■□ 3.19
VPS28-203ENST00000524521 ADCY10Q96PN6 1610 aa34.96■■■■□ 3.19
VPS28-203ENST00000524521 CTTNBP2Q8WZ74 1663 aa34.96■■■■□ 3.19
VPS28-203ENST00000524521 KIAA0556O60303 1618 aa34.85■■■■□ 3.17
VPS28-203ENST00000524521 GOLGA3Q08378 1498 aa34.8■■■■□ 3.16
VPS28-203ENST00000524521 UACAQ9BZF9 1416 aa34.79■■■■□ 3.16
VPS28-203ENST00000524521 MAPKBP1O60336 1514 aa34.78■■■■□ 3.16
VPS28-203ENST00000524521 FAM69CQ0P6D2 419 aa34.75■■■■□ 3.15
VPS28-203ENST00000524521 ABCC2Q92887 1545 aa34.74■■■■□ 3.15
VPS28-203ENST00000524521 UHRF1BP1LA0JNW5 1464 aa34.73■■■■□ 3.15
VPS28-203ENST00000524521 KIF13AQ9H1H9 1805 aa34.72■■■■□ 3.15
VPS28-203ENST00000524521 ABCC10Q5T3U5 1492 aa34.71■■■■□ 3.15
VPS28-203ENST00000524521 P3H3Q8IVL6 736 aa34.68■■■■□ 3.14
VPS28-203ENST00000524521 RANGAP1P46060 587 aaPredicted RBP34.62■■■■□ 3.13
VPS28-203ENST00000524521 KIF21BO75037 1637 aa34.62■■■■□ 3.13
VPS28-203ENST00000524521 DIP2BQ9P265 1576 aa34.62■■■■□ 3.13
VPS28-203ENST00000524521 EHMT2Q96KQ7 1210 aa34.61■■■■□ 3.13
VPS28-203ENST00000524521 PLB1Q6P1J6 1458 aa34.6■■■■□ 3.13
VPS28-203ENST00000524521 ASXL2Q76L83 1435 aa34.58■■■■□ 3.13
VPS28-203ENST00000524521 KDM5BQ9UGL1 1544 aa34.58■■■■□ 3.13
VPS28-203ENST00000524521 UBTFP17480 764 aaKnown RBP34.51■■■■□ 3.12
VPS28-203ENST00000524521 ABCA8O94911 1581 aa34.5■■■■□ 3.11
VPS28-203ENST00000524521 SAMD9Q5K651 1589 aa34.5■■■■□ 3.11
VPS28-203ENST00000524521 ZCCHC11Q5TAX3 1644 aaKnown RBP34.5■■■■□ 3.11
VPS28-203ENST00000524521 TSPOAP1O95153 1857 aa34.4■■■■□ 3.1
VPS28-203ENST00000524521 ARID3CA6NKF2 412 aa34.37■■■■□ 3.09
VPS28-203ENST00000524521 FHOD3Q2V2M9 1422 aa34.36■■■■□ 3.09
VPS28-203ENST00000524521 GLI2P10070 1586 aa34.36■■■■□ 3.09
VPS28-203ENST00000524521 EPRSP07814 1512 aaKnown RBP34.35■■■■□ 3.09
VPS28-203ENST00000524521 WDR7Q9Y4E6 1490 aa34.33■■■■□ 3.09
VPS28-203ENST00000524521 KCNH8Q96L42 1107 aa34.3■■■■□ 3.08
VPS28-203ENST00000524521 EFCAB5A4FU69 1503 aa34.29■■■■□ 3.08
VPS28-203ENST00000524521 ATP10BO94823 1461 aa34.27■■■■□ 3.08
VPS28-203ENST00000524521 RAPGEF6Q8TEU7 1601 aa34.27■■■■□ 3.08
VPS28-203ENST00000524521 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP34.23■■■■□ 3.07
VPS28-203ENST00000524521 HNRNPUL2Q1KMD3 747 aaKnown RBP34.23■■■■□ 3.07
VPS28-203ENST00000524521 MAP3K4Q9Y6R4 1608 aa34.19■■■■□ 3.06
VPS28-203ENST00000524521 KDM6BO15054 1643 aa34.18■■■■□ 3.06
VPS28-203ENST00000524521 PPRC1Q5VV67 1664 aaKnown RBP34.18■■■■□ 3.06
VPS28-203ENST00000524521 NUP153P49790 1475 aaKnown RBP34.15■■■■□ 3.06
VPS28-203ENST00000524521 ARHGAP35Q9NRY4 1499 aa34.12■■■■□ 3.05
VPS28-203ENST00000524521 CD109Q6YHK3 1445 aa34.1■■■■□ 3.05
VPS28-203ENST00000524521 TEX14Q8IWB6 1497 aa34.09■■■■□ 3.05
VPS28-203ENST00000524521 CFAP43Q8NDM7 1665 aa34.04■■■■□ 3.04
VPS28-203ENST00000524521 ATP1B4Q9UN42 357 aaPredicted RBP34.04■■■■□ 3.04
VPS28-203ENST00000524521 FMN1Q68DA7 1419 aa34.03■■■■□ 3.04
VPS28-203ENST00000524521 PLEKHD1A6NEE1 506 aa34.02■■■■□ 3.04
VPS28-203ENST00000524521 MAGI3Q5TCQ9 1506 aa33.99■■■■□ 3.03
VPS28-203ENST00000524521 COL17A1Q9UMD9 1497 aaPredicted RBP33.95■■■■□ 3.03
VPS28-203ENST00000524521 ABCA9Q8IUA7 1624 aa33.9■■■■□ 3.02
VPS28-203ENST00000524521 CDK13Q14004 1512 aaKnown RBP33.9■■■■□ 3.02
VPS28-203ENST00000524521 AEBP2Q6ZN18 517 aaPredicted RBP33.89■■■■□ 3.02
VPS28-203ENST00000524521 HECW1Q76N89 1606 aa33.87■■■■□ 3.01
VPS28-203ENST00000524521 CLIP1P30622 1438 aa33.84■■■■□ 3.01
VPS28-203ENST00000524521 CDK11AQ9UQ88 783 aaPredicted RBP33.79■■■■□ 3
VPS28-203ENST00000524521 PHLDB1Q86UU1 1377 aa33.73■■■□□ 2.99
VPS28-203ENST00000524521 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP33.73■■■□□ 2.997e-7■■□□□ 14.3
VPS28-203ENST00000524521 CASKIN1Q8WXD9 1431 aa33.72■■■□□ 2.99
VPS28-203ENST00000524521 ARAP3Q8WWN8 1544 aa33.71■■■□□ 2.99
VPS28-203ENST00000524521 NEO1Q92859 1461 aa33.69■■■□□ 2.98
VPS28-203ENST00000524521 PCF11O94913 1555 aaKnown RBP33.68■■■□□ 2.98
VPS28-203ENST00000524521 LRRIQ1Q96JM4 1722 aa33.67■■■□□ 2.98
VPS28-203ENST00000524521 TTC37Q6PGP7 1564 aa33.65■■■□□ 2.98
VPS28-203ENST00000524521 LOC105371045A0A1W2PR82 267 aa33.65■■■□□ 2.98
VPS28-203ENST00000524521 KDM4FA0A1W2PPD8 638 aa33.62■■■□□ 2.97
VPS28-203ENST00000524521 RAPGEF3O95398 923 aa33.62■■■□□ 2.97
VPS28-203ENST00000524521 TROQ12816 1431 aaPredicted RBP33.62■■■□□ 2.97
VPS28-203ENST00000524521 CCDC18Q5T9S5 1454 aa33.6■■■□□ 2.97
VPS28-203ENST00000524521 FYCO1Q9BQS8 1478 aa33.6■■■□□ 2.97
VPS28-203ENST00000524521 CEP162Q5TB80 1403 aa33.6■■■□□ 2.97
VPS28-203ENST00000524521 FANCAO15360 1455 aa33.59■■■□□ 2.97
VPS28-203ENST00000524521 AKNAQ7Z591 1439 aa33.57■■■□□ 2.96
VPS28-203ENST00000524521 PLCH2O75038 1416 aa33.55■■■□□ 2.96
VPS28-203ENST00000524521 KIF14Q15058 1648 aa33.53■■■□□ 2.96
VPS28-203ENST00000524521 CFAP74Q9C0B2 1584 aa33.52■■■□□ 2.96
VPS28-203ENST00000524521 DENND4BO75064 1496 aaPredicted RBP33.49■■■□□ 2.95
VPS28-203ENST00000524521 EFCAB2Q5VUJ9 269 aa33.48■■■□□ 2.95
VPS28-203ENST00000524521 ADGRL1O94910 1474 aa33.46■■■□□ 2.95
VPS28-203ENST00000524521 MYO5CQ9NQX4 1742 aa33.46■■■□□ 2.95
VPS28-203ENST00000524521 FRMPD1Q5SYB0 1578 aa33.43■■■□□ 2.94
VPS28-203ENST00000524521 SCAPERQ9BY12 1400 aa33.4■■■□□ 2.94
VPS28-203ENST00000524521 ARHGAP5Q13017 1502 aa33.38■■■□□ 2.93
VPS28-203ENST00000524521 RICTORQ6R327 1708 aa33.37■■■□□ 2.93
Retrieved 100 of 20,778 RNA–protein pairs in 111.1 ms